Wall clock time and date at job start Tue Mar 31 2020 12:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47245 * 2 1 4 4 C 1.35649 * 117.00085 * 179.97438 * 3 2 1 5 5 C 1.38710 * 120.14827 * 359.97438 * 4 3 2 6 6 C 1.38057 * 120.08244 * 180.02562 * 5 4 3 7 7 C 1.38547 * 120.38973 * 359.97438 * 6 5 4 8 8 C 1.37785 * 120.30262 * 0.02562 * 7 6 5 9 9 C 1.39710 * 119.90585 * 359.97438 * 8 7 6 10 10 C 1.47537 * 120.19005 * 180.02562 * 9 8 7 11 11 O 1.21587 * 120.00045 * 179.97438 * 10 9 8 12 12 N 1.34778 * 119.99706 * 359.97438 * 10 9 8 13 13 C 1.46504 * 119.99213 * 180.02562 * 12 10 9 14 14 C 1.53041 * 109.45748 * 275.06383 * 13 12 10 15 15 C 1.53198 * 109.31111 * 178.61737 * 14 13 12 16 16 N 1.46930 * 108.77346 * 54.63706 * 15 14 13 17 17 C 1.36937 * 120.62679 * 126.41232 * 16 15 14 18 18 H 1.07992 * 120.00323 * 331.82400 * 17 16 15 19 19 C 1.38814 * 119.99454 * 151.82988 * 17 16 15 20 20 N 1.31617 * 120.00326 * 343.06705 * 19 17 16 21 21 Si 1.86805 * 119.99958 * 163.06862 * 19 17 16 22 22 H 1.48501 * 109.46988 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47326 * 119.99437 * 21 19 17 24 24 H 1.48497 * 109.47245 * 239.99728 * 21 19 17 25 25 C 1.46921 * 118.73733 * 306.39089 * 16 15 14 26 26 C 1.53039 * 109.45757 * 154.99934 * 13 12 10 27 27 H 1.09004 * 109.47338 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47716 * 299.99911 * 1 2 3 29 29 H 1.08998 * 109.46887 * 60.00374 * 1 2 3 30 30 H 1.08997 * 109.47324 * 239.99748 * 2 1 3 31 31 H 1.09006 * 109.46833 * 120.00296 * 2 1 3 32 32 H 1.08002 * 119.96429 * 0.02562 * 5 4 3 33 33 H 1.07998 * 119.80746 * 180.27486 * 6 5 4 34 34 H 1.08007 * 119.84960 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.04623 * 179.97438 * 8 7 6 36 36 H 0.96996 * 120.00221 * 0.02562 * 12 10 9 37 37 H 1.08999 * 109.46151 * 35.02692 * 13 12 10 38 38 H 1.08997 * 109.50037 * 298.56865 * 14 13 12 39 39 H 1.08996 * 109.49961 * 58.66870 * 14 13 12 40 40 H 1.08992 * 109.58667 * 294.85117 * 15 14 13 41 41 H 1.08997 * 109.70202 * 174.48831 * 15 14 13 42 42 H 0.96998 * 120.00174 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.58620 * 293.82005 * 25 16 15 44 44 H 1.09000 * 109.70233 * 173.46445 * 25 16 15 45 45 H 1.09000 * 109.49668 * 301.33810 * 26 13 12 46 46 H 1.09004 * 109.49839 * 61.43040 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.1989 0.4272 0.0016 6 6 5.5674 0.6096 0.0027 7 6 6.1042 1.8869 0.0022 8 6 5.2769 2.9887 0.0011 9 6 3.8902 2.8185 0.0000 10 6 2.9984 3.9939 -0.0017 11 8 1.7921 3.8418 -0.0031 12 7 3.5211 5.2362 -0.0016 13 6 2.6355 6.4033 -0.0027 14 6 2.2271 6.7320 -1.4406 15 6 1.2739 7.9313 -1.4349 16 7 1.9168 9.0430 -0.7211 17 6 2.0365 10.2736 -1.3096 18 1 2.0981 10.3544 -2.3848 19 6 2.0789 11.4174 -0.5241 20 7 1.6775 11.3707 0.7285 21 14 2.7056 13.0228 -1.2448 22 1 3.0941 12.8107 -2.6624 23 1 1.6347 14.0491 -1.1729 24 1 3.8866 13.4846 -0.4722 25 6 2.4285 8.8092 0.6362 26 6 3.3687 7.6001 0.6073 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.7881 -0.5717 0.0016 33 1 6.2234 -0.2483 -0.0010 34 1 7.1761 2.0195 0.0026 35 1 5.6997 3.9825 0.0012 36 1 4.4834 5.3576 -0.0009 37 1 1.7451 6.1841 0.5865 38 1 3.1148 6.9756 -2.0243 39 1 1.7257 5.8709 -1.8822 40 1 0.3475 7.6594 -0.9291 41 1 1.0560 8.2323 -2.4596 42 1 1.7067 12.1700 1.2772 43 1 1.5962 8.6089 1.3109 44 1 2.9740 9.6882 0.9797 45 1 3.6798 7.3568 1.6233 46 1 4.2457 7.8356 0.0043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110823622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:50 Heat of formation + Delta-G solvation = -49.753445 kcal Electronic energy + Delta-G solvation = -26705.049045 eV Core-core repulsion = 22980.545943 eV Total energy + Delta-G solvation = -3724.503102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62319 -40.38035 -38.88202 -38.29749 -35.98283 -34.03903 -32.93930 -32.40009 -31.66739 -30.90810 -30.43247 -27.03853 -25.20189 -24.77102 -23.92262 -23.28734 -22.56805 -21.35501 -21.02010 -19.55315 -18.77993 -18.04432 -17.42582 -17.10733 -16.84914 -16.35474 -16.04143 -15.90337 -15.62842 -15.48762 -15.35303 -14.85240 -14.53464 -14.37353 -14.34546 -14.10054 -14.04177 -13.40522 -13.22056 -13.02834 -12.91989 -12.90528 -12.62997 -12.55180 -12.51257 -12.22640 -12.01342 -11.96072 -11.88614 -11.67205 -11.56161 -11.36928 -10.78013 -10.57297 -10.14892 -9.91390 -9.20905 -8.72121 -7.88205 -5.34451 -0.11029 0.43107 1.47887 1.49453 1.60697 1.94408 2.17085 2.26817 2.51764 2.88382 3.27600 3.62220 3.70653 3.78842 3.89870 3.98679 4.02806 4.04960 4.18797 4.25276 4.31404 4.35254 4.41780 4.44560 4.50470 4.62767 4.79288 4.81385 4.84941 4.86791 4.89890 5.01409 5.03602 5.13498 5.15346 5.24374 5.27377 5.34694 5.45166 5.48290 5.55981 5.63976 5.69759 5.79958 6.38205 6.44330 6.65874 7.13568 7.32762 7.82450 8.36337 9.19223 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.002745 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.508986 B =10198.274363 C =11006.283476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.316 6.316 4 C 0.161 3.839 5 C -0.224 4.224 6 C -0.046 4.046 7 C -0.165 4.165 8 C -0.048 4.048 9 C -0.203 4.203 10 C 0.551 3.449 11 O -0.570 6.570 12 N -0.710 5.710 13 C 0.164 3.836 14 C -0.122 4.122 15 C 0.146 3.854 16 N -0.609 5.609 17 C -0.264 4.264 18 H 0.068 0.932 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.266 1.266 23 H -0.294 1.294 24 H -0.287 1.287 25 C 0.180 3.820 26 C -0.128 4.128 27 H 0.108 0.892 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.155 0.845 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.410 0.590 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.005 0.995 41 H 0.058 0.942 42 H 0.251 0.749 43 H -0.008 1.008 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.143 -26.582 -0.821 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.229 6.229 4 C 0.113 3.887 5 C -0.242 4.242 6 C -0.064 4.064 7 C -0.183 4.183 8 C -0.067 4.067 9 C -0.207 4.207 10 C 0.340 3.660 11 O -0.450 6.450 12 N -0.362 5.362 13 C 0.059 3.941 14 C -0.163 4.163 15 C 0.020 3.980 16 N -0.332 5.332 17 C -0.394 4.394 18 H 0.085 0.915 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.799 3.201 22 H -0.191 1.191 23 H -0.221 1.221 24 H -0.213 1.213 25 C 0.054 3.946 26 C -0.167 4.167 27 H 0.126 0.874 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.173 0.827 33 H 0.183 0.817 34 H 0.179 0.821 35 H 0.168 0.832 36 H 0.247 0.753 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.023 0.977 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.011 0.989 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.089 -26.413 -0.728 28.284 hybrid contribution -0.014 1.141 -0.050 1.143 sum 10.075 -25.272 -0.778 27.217 Atomic orbital electron populations 1.21783 0.92513 1.03947 1.02455 1.23146 0.96564 0.80950 1.02683 1.86368 1.18825 1.30883 1.86818 1.19401 0.83344 0.93512 0.92439 1.21540 0.94860 0.97956 1.09884 1.21611 0.93983 0.98780 0.91987 1.21410 1.01528 0.91639 1.03723 1.21469 0.89913 1.01395 0.93885 1.19467 0.94671 0.90573 1.15977 1.18560 0.87850 0.83722 0.75847 1.90784 1.16596 1.86537 1.51041 1.45944 1.10721 1.04575 1.75006 1.20626 0.92821 0.84341 0.96266 1.22158 1.00135 0.97435 0.96535 1.20946 0.93046 0.87948 0.96107 1.44357 1.66489 1.07440 1.14938 1.19559 1.44029 0.83878 0.91901 0.91452 1.25847 1.00809 1.00859 0.97035 1.70196 1.50201 1.28882 1.08915 0.85161 0.77351 0.79355 0.78269 1.19051 1.22111 1.21300 1.20550 0.93656 0.95246 0.85187 1.22262 0.99313 0.94380 1.00780 0.87391 0.92965 0.92948 0.90318 0.90322 0.82719 0.81734 0.82075 0.83205 0.75251 0.92870 0.91345 0.92718 0.97719 0.92311 0.93981 0.98947 0.91641 0.90516 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 10.28 71.98 0.74 -1.84 16 2 C 0.04 0.73 5.46 71.98 0.39 1.12 16 3 O -0.32 -9.11 8.21 -68.72 -0.56 -9.68 16 4 C 0.16 4.06 6.70 22.84 0.15 4.21 16 5 C -0.22 -3.63 9.03 22.34 0.20 -3.43 16 6 C -0.05 -0.53 10.03 22.30 0.22 -0.31 16 7 C -0.17 -2.06 10.02 22.24 0.22 -1.84 16 8 C -0.05 -0.86 9.54 22.52 0.21 -0.64 16 9 C -0.20 -5.37 5.89 -20.01 -0.12 -5.49 16 10 C 0.55 18.67 7.73 86.70 0.67 19.34 16 11 O -0.57 -24.50 14.82 16.93 0.25 -24.25 16 12 N -0.71 -21.35 5.03 -445.56 -2.24 -23.59 16 13 C 0.16 6.07 2.41 45.02 0.11 6.18 16 14 C -0.12 -4.73 5.65 30.67 0.17 -4.55 16 15 C 0.15 6.65 6.52 86.36 0.56 7.21 16 16 N -0.61 -31.70 2.99 -699.11 -2.09 -33.80 16 17 C -0.26 -14.75 9.58 84.03 0.81 -13.95 16 18 H 0.07 3.68 7.88 -2.91 -0.02 3.65 16 19 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 20 N -0.94 -55.92 11.19 21.65 0.24 -55.68 16 21 Si 0.97 44.96 29.59 68.60 2.03 46.99 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 25 C 0.18 8.86 5.30 86.36 0.46 9.32 16 26 C -0.13 -4.76 5.55 30.67 0.17 -4.59 16 27 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.07 7.66 -2.39 -0.02 1.05 16 31 H 0.08 1.06 7.66 -2.38 -0.02 1.05 16 32 H 0.16 1.67 6.30 -2.91 -0.02 1.65 16 33 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 35 H 0.15 1.98 6.40 -2.91 -0.02 1.96 16 36 H 0.41 9.28 6.63 -92.71 -0.61 8.66 16 37 H 0.05 2.30 7.58 -2.39 -0.02 2.28 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.06 2.59 7.93 -2.39 -0.02 2.57 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 45 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 Total: -1.00 -77.12 369.58 3.39 -73.73 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.37 Total: 17.93 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.40 Total: 8.34 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -4.09 Total: -113.07 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.31 Total: -33.92 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -77.12 3.39 -73.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.976 kcal (2) G-P(sol) polarization free energy of solvation -77.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds