Wall clock time and date at job start Tue Mar 31 2020 13:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 119.99698 * 2 1 4 4 C 1.52999 * 109.47248 * 89.99950 * 3 2 1 5 5 H 1.08995 * 109.49464 * 59.97162 * 4 3 2 6 6 C 1.53096 * 109.47626 * 179.97438 * 4 3 2 7 7 C 1.53177 * 109.21145 * 177.61951 * 6 4 3 8 8 C 1.53183 * 109.03624 * 302.98717 * 7 6 4 9 9 C 1.53083 * 109.16156 * 56.98518 * 8 7 6 10 10 O 1.42911 * 109.41556 * 302.38528 * 9 8 7 11 11 C 1.34773 * 119.99808 * 179.97438 * 2 1 3 12 12 O 1.21582 * 119.99605 * 180.02562 * 11 2 1 13 13 N 1.34776 * 120.00426 * 0.02562 * 11 2 1 14 14 C 1.39240 * 120.00224 * 175.72031 * 13 11 2 15 15 C 1.39481 * 119.83358 * 215.00773 * 14 13 11 16 16 C 1.36371 * 120.16833 * 179.76173 * 15 14 13 17 17 C 1.40876 * 119.82889 * 0.51217 * 16 15 14 18 18 C 1.41147 * 120.16776 * 179.76564 * 17 16 15 19 19 H 1.07999 * 120.00148 * 214.78278 * 18 17 16 20 20 C 1.39895 * 120.00225 * 34.76950 * 18 17 16 21 21 N 1.30888 * 119.99573 * 355.53787 * 20 18 17 22 22 Si 1.86798 * 120.00096 * 175.53019 * 20 18 17 23 23 H 1.48499 * 109.46775 * 90.00888 * 22 20 18 24 24 H 1.48503 * 109.46982 * 210.00618 * 22 20 18 25 25 H 1.48495 * 109.47132 * 330.00335 * 22 20 18 26 26 C 1.40871 * 119.66955 * 359.74354 * 17 16 15 27 27 C 1.36378 * 119.83086 * 359.97438 * 26 17 16 28 28 H 1.08997 * 109.47309 * 90.00587 * 1 2 3 29 29 H 1.08997 * 109.47253 * 210.00537 * 1 2 3 30 30 H 1.09000 * 109.47591 * 330.00660 * 1 2 3 31 31 H 1.08998 * 109.47319 * 329.99021 * 3 2 1 32 32 H 1.09002 * 109.46429 * 209.99313 * 3 2 1 33 33 H 1.09004 * 109.52191 * 57.68787 * 6 4 3 34 34 H 1.09001 * 109.52687 * 297.55559 * 6 4 3 35 35 H 1.08996 * 109.54489 * 62.85942 * 7 6 4 36 36 H 1.09008 * 109.54089 * 183.12284 * 7 6 4 37 37 H 1.08997 * 109.51859 * 176.88988 * 8 7 6 38 38 H 1.08996 * 109.52106 * 297.01356 * 8 7 6 39 39 H 1.08997 * 109.48653 * 62.37251 * 9 8 7 40 40 H 1.08998 * 109.48080 * 182.40810 * 9 8 7 41 41 H 0.97001 * 119.99607 * 355.72664 * 13 11 2 42 42 H 1.07999 * 119.91688 * 0.02562 * 15 14 13 43 43 H 1.07994 * 120.09102 * 180.25392 * 16 15 14 44 44 H 0.97001 * 119.99707 * 179.97438 * 21 20 18 45 45 H 1.08004 * 120.08571 * 180.02562 * 26 17 16 46 46 H 1.07997 * 119.91544 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 1.4425 5 1 3.0411 0.9510 1.9568 6 6 3.2184 3.0361 1.4426 7 6 3.4183 3.5026 2.8878 8 6 2.0509 3.6227 3.5677 9 6 1.3294 2.2750 3.4869 10 8 1.2036 1.8848 2.1178 11 6 2.1388 -1.1672 0.0005 12 8 3.3546 -1.1671 0.0010 13 7 1.4649 -2.3344 0.0005 14 6 2.1583 -3.5386 -0.0889 15 6 1.6021 -4.6092 -0.7890 16 6 2.2774 -5.7901 -0.8850 17 6 3.5349 -5.9306 -0.2658 18 6 4.2378 -7.1512 -0.3564 19 1 4.8389 -7.4911 0.4739 20 6 4.1556 -7.9209 -1.5217 21 7 3.3591 -7.5540 -2.4934 22 14 5.1825 -9.4720 -1.6909 23 1 4.4168 -10.6320 -1.1680 24 1 5.5064 -9.6975 -3.1226 25 1 6.4406 -9.3196 -0.9169 26 6 4.0877 -4.8465 0.4440 27 6 3.4031 -3.6699 0.5265 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6084 2.0284 -0.5140 32 1 3.1499 1.1383 -0.5138 33 1 2.6489 3.7859 0.8933 34 1 4.1893 2.8958 0.9675 35 1 4.0297 2.7768 3.4240 36 1 3.9143 4.4733 2.8923 37 1 2.1870 3.9009 4.6128 38 1 1.4584 4.3851 3.0620 39 1 1.9029 1.5225 4.0281 40 1 0.3383 2.3660 3.9314 41 1 0.4969 -2.3355 0.0627 42 1 0.6361 -4.5013 -1.2598 43 1 1.8474 -6.6168 -1.4308 44 1 3.3024 -8.0874 -3.3016 45 1 5.0515 -4.9467 0.9210 46 1 3.8258 -2.8378 1.0699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128247562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:42 Heat of formation + Delta-G solvation = -70.704383 kcal Electronic energy + Delta-G solvation = -26602.345230 eV Core-core repulsion = 22876.933627 eV Total energy + Delta-G solvation = -3725.411603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63454 -40.30823 -39.22484 -36.67784 -36.14937 -34.72126 -34.53599 -32.82203 -31.45635 -30.65363 -28.68647 -27.45581 -26.33421 -25.08983 -23.71001 -23.10672 -22.40093 -21.19394 -20.75588 -19.35732 -19.10618 -18.08352 -17.27236 -17.16187 -17.05482 -16.51808 -16.29906 -15.76504 -15.52742 -15.42397 -15.15870 -14.84319 -14.51905 -14.31946 -14.00913 -13.95514 -13.63817 -13.54769 -13.39846 -13.25632 -13.10943 -12.88890 -12.78935 -12.75933 -12.44465 -12.22193 -11.97718 -11.81154 -11.73451 -11.39169 -11.29806 -11.21825 -10.97442 -10.64047 -10.40911 -9.62892 -9.45029 -8.66706 -8.48197 -6.30632 0.85492 1.15552 1.40128 1.47507 1.54824 1.71163 2.17565 2.25844 2.79368 2.82792 3.07271 3.69334 3.77130 3.89718 3.92222 4.02415 4.13096 4.28375 4.32224 4.38836 4.43310 4.53585 4.58078 4.66567 4.68422 4.80259 4.86456 4.92408 4.93598 4.93892 5.05200 5.11408 5.14759 5.15874 5.18255 5.32211 5.36692 5.45541 5.57749 5.69257 5.81404 6.05045 6.09830 6.20464 6.27681 6.41287 6.69874 6.98418 7.01930 7.03371 7.63084 8.44579 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028902 B = 0.002485 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.566228 B =11265.589087 C =11679.112564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.622 5.622 3 C 0.142 3.858 4 C 0.080 3.920 5 H 0.027 0.973 6 C -0.144 4.144 7 C -0.124 4.124 8 C -0.149 4.149 9 C 0.054 3.946 10 O -0.384 6.384 11 C 0.691 3.309 12 O -0.623 6.623 13 N -0.660 5.660 14 C 0.041 3.959 15 C -0.120 4.120 16 C -0.157 4.157 17 C 0.066 3.934 18 C -0.498 4.498 19 H 0.072 0.928 20 C 0.027 3.973 21 N -0.843 5.843 22 Si 0.989 3.011 23 H -0.259 1.259 24 H -0.269 1.269 25 H -0.264 1.264 26 C -0.218 4.218 27 C -0.098 4.098 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.034 0.966 40 H 0.108 0.892 41 H 0.411 0.589 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.284 0.716 45 H 0.095 0.905 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 20.819 6.707 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.358 5.358 3 C 0.019 3.981 4 C 0.021 3.979 5 H 0.045 0.955 6 C -0.182 4.182 7 C -0.162 4.162 8 C -0.187 4.187 9 C -0.023 4.023 10 O -0.303 6.303 11 C 0.393 3.607 12 O -0.504 6.504 13 N -0.309 5.309 14 C -0.053 4.053 15 C -0.141 4.141 16 C -0.177 4.177 17 C 0.063 3.937 18 C -0.529 4.529 19 H 0.090 0.910 20 C -0.185 4.185 21 N -0.471 5.471 22 Si 0.810 3.190 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.188 1.188 26 C -0.238 4.238 27 C -0.118 4.118 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.127 0.873 41 H 0.250 0.750 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.713 20.775 6.366 23.057 hybrid contribution 0.538 -0.819 0.095 0.985 sum -7.175 19.956 6.461 22.169 Atomic orbital electron populations 1.21933 0.77335 1.04333 1.02587 1.46958 1.07906 1.03550 1.77384 1.21500 0.98256 0.83802 0.94589 1.22485 0.85682 0.96159 0.93608 0.95495 1.22108 1.01031 0.96621 0.98430 1.21606 0.97488 1.02090 0.94999 1.22146 0.96435 0.97895 1.02189 1.22706 1.02028 0.95096 0.82435 1.87876 1.28802 1.89245 1.24382 1.16194 0.85081 0.81333 0.78094 1.90858 1.13609 1.86567 1.59388 1.42079 1.09963 1.02585 1.76312 1.17129 0.95986 0.86221 1.05977 1.20519 1.00601 0.93415 0.99546 1.21166 0.94864 0.97712 1.03941 1.18020 0.91580 0.92926 0.91142 1.19693 1.27127 1.04579 1.01500 0.91022 1.26739 0.95839 1.01420 0.94484 1.69835 1.32796 1.38229 1.06204 0.85101 0.78724 0.76910 0.78294 1.18358 1.19405 1.18765 1.20914 1.00184 0.93776 1.08974 1.20496 0.95377 0.96420 0.99499 0.91334 0.91388 0.88511 0.86936 0.90051 0.89393 0.90749 0.93010 0.89843 0.89675 0.90295 0.94774 0.87350 0.75020 0.85825 0.86179 0.90520 0.88721 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 9.98 127.77 1.28 2.73 16 2 N -0.62 -16.65 2.80 -864.94 -2.42 -19.07 16 3 C 0.14 3.26 5.13 86.38 0.44 3.70 16 4 C 0.08 1.78 2.92 30.63 0.09 1.87 16 5 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 6 C -0.14 -2.39 5.41 30.69 0.17 -2.22 16 7 C -0.12 -1.82 6.03 30.71 0.19 -1.63 16 8 C -0.15 -1.90 6.14 30.68 0.19 -1.71 16 9 C 0.05 0.89 6.84 72.01 0.49 1.38 16 10 O -0.38 -7.94 9.05 -148.98 -1.35 -9.29 16 11 C 0.69 25.72 8.11 179.06 1.45 27.17 16 12 O -0.62 -28.80 13.34 -3.97 -0.05 -28.85 16 13 N -0.66 -24.10 5.18 -316.79 -1.64 -25.74 16 14 C 0.04 1.89 6.31 38.57 0.24 2.13 16 15 C -0.12 -5.60 9.90 22.13 0.22 -5.38 16 16 C -0.16 -8.41 8.61 22.48 0.19 -8.21 16 17 C 0.07 3.73 5.55 -21.28 -0.12 3.62 16 18 C -0.50 -28.07 9.02 23.39 0.21 -27.86 16 19 H 0.07 3.91 7.85 -2.91 -0.02 3.88 16 20 C 0.03 1.40 5.42 85.23 0.46 1.86 16 21 N -0.84 -45.37 10.59 21.82 0.23 -45.14 16 22 Si 0.99 39.99 29.56 68.60 2.03 42.02 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 24 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 26 C -0.22 -11.85 9.74 22.48 0.22 -11.63 16 27 C -0.10 -4.97 8.61 22.14 0.19 -4.78 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.17 6.30 -2.39 -0.02 1.15 16 30 H 0.10 1.50 7.07 -2.39 -0.02 1.48 16 31 H 0.11 1.86 8.07 -2.39 -0.02 1.84 16 32 H 0.08 2.17 7.42 -2.39 -0.02 2.15 16 33 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.41 11.64 6.51 -92.71 -0.60 11.04 16 42 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 43 H 0.12 6.66 6.13 -2.91 -0.02 6.64 16 44 H 0.28 13.88 8.30 -92.71 -0.77 13.11 16 45 H 0.09 4.95 8.06 -2.91 -0.02 4.92 16 46 H 0.10 5.35 6.22 -2.91 -0.02 5.33 16 Total: -1.00 -70.80 366.98 3.09 -67.71 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: 0.38 Total: 37.32 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 5.91 Total: -18.96 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -3.83 Total: -89.96 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -1.40 Total: -38.14 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -70.80 3.09 -67.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128247562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.995 kcal (2) G-P(sol) polarization free energy of solvation -70.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds