Wall clock time and date at job start Tue Mar 31 2020 12:59:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.47017 * 111.00079 * 2 1
4 4 C 1.53092 * 109.25591 * 182.39097 * 3 2 1
5 5 O 1.43020 * 109.29640 * 303.17131 * 4 3 2
6 6 C 1.43017 * 113.73390 * 58.60004 * 5 4 3
7 7 H 1.09005 * 109.50713 * 61.35808 * 6 5 4
8 8 C 1.50697 * 109.50492 * 181.44321 * 6 5 4
9 9 O 1.21287 * 120.00328 * 4.91413 * 8 6 5
10 10 N 1.34781 * 120.00044 * 184.91343 * 8 6 5
11 11 C 1.46500 * 119.99875 * 175.06728 * 10 8 6
12 12 H 1.08994 * 109.47134 * 38.64790 * 11 10 8
13 13 C 1.52998 * 109.47351 * 278.64308 * 11 10 8
14 14 C 1.50699 * 109.47043 * 174.21541 * 13 11 10
15 15 H 1.08000 * 119.99941 * 354.88539 * 14 13 11
16 16 C 1.37874 * 119.99885 * 174.88309 * 14 13 11
17 17 N 1.31512 * 119.99960 * 0.02562 * 16 14 13
18 18 Si 1.86808 * 120.00058 * 179.97438 * 16 14 13
19 19 H 1.48502 * 109.46476 * 60.00284 * 18 16 14
20 20 H 1.48500 * 109.47128 * 179.97438 * 18 16 14
21 21 H 1.48500 * 109.46956 * 300.00370 * 18 16 14
22 22 C 1.50699 * 109.46691 * 158.64582 * 11 10 8
23 23 C 1.38237 * 120.00166 * 39.72705 * 22 11 10
24 24 C 1.38243 * 119.99710 * 179.74298 * 23 22 11
25 25 C 1.38231 * 119.99748 * 0.53190 * 24 23 22
26 26 C 1.38230 * 120.00312 * 359.74358 * 25 24 23
27 27 C 1.38229 * 120.00208 * 359.97438 * 26 25 24
28 28 C 1.47012 * 110.99722 * 123.63460 * 2 1 3
29 29 H 1.09000 * 109.47408 * 296.36813 * 1 2 3
30 30 H 1.09000 * 109.46811 * 56.36257 * 1 2 3
31 31 H 1.08996 * 109.47402 * 176.36357 * 1 2 3
32 32 H 1.09001 * 109.50689 * 302.32846 * 3 2 1
33 33 H 1.09006 * 109.50565 * 62.41015 * 3 2 1
34 34 H 1.08998 * 109.50952 * 63.08666 * 4 3 2
35 35 H 1.09004 * 109.50271 * 183.17021 * 4 3 2
36 36 H 0.96993 * 119.99530 * 355.07161 * 10 8 6
37 37 H 1.08999 * 109.46718 * 54.21940 * 13 11 10
38 38 H 1.08999 * 109.47224 * 294.22040 * 13 11 10
39 39 H 0.97008 * 119.99748 * 179.97438 * 17 16 14
40 40 H 1.07994 * 119.99958 * 359.97438 * 23 22 11
41 41 H 1.08001 * 119.99506 * 180.29513 * 24 23 22
42 42 H 1.08002 * 119.99522 * 179.76917 * 25 24 23
43 43 H 1.08000 * 119.99878 * 180.02562 * 26 25 24
44 44 H 1.07999 * 120.00004 * 179.97438 * 27 26 25
45 45 H 1.08998 * 109.50794 * 57.66963 * 28 2 1
46 46 H 1.09007 * 109.54301 * 297.56032 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9959 1.3725 0.0000
4 6 3.5250 1.3264 -0.0603
5 8 4.0183 0.5571 1.0398
6 6 3.5249 -0.7849 1.0710
7 1 3.8385 -1.3091 0.1682
8 6 4.0741 -1.4949 2.2815
9 8 4.7422 -0.8864 3.0904
10 7 3.8227 -2.8063 2.4653
11 6 4.4445 -3.5217 3.5824
12 1 4.4677 -2.8755 4.4598
13 6 5.8727 -3.9178 3.2027
14 6 6.5597 -4.5265 4.3979
15 1 6.0607 -4.5464 5.3555
16 6 7.8253 -5.0581 4.2688
17 7 8.4331 -5.0335 3.1028
18 14 8.6773 -5.8120 5.7505
19 1 7.8643 -6.9424 6.2667
20 1 10.0181 -6.3095 5.3505
21 1 8.8264 -4.7841 6.8118
22 6 3.6451 -4.7610 3.8923
23 6 3.1187 -5.5193 2.8633
24 6 2.3899 -6.6591 3.1476
25 6 2.1782 -7.0344 4.4610
26 6 2.6997 -6.2730 5.4901
27 6 3.4335 -5.1365 5.2058
28 6 1.9958 -0.7602 1.1427
29 1 -0.3634 0.4564 0.9207
30 1 -0.3633 0.5693 -0.8556
31 1 -0.3634 -1.0255 -0.0652
32 1 1.6134 1.9092 -0.8682
33 1 1.6821 1.8829 0.9107
34 1 3.8386 0.8643 -0.9964
35 1 3.9221 2.3399 -0.0037
36 1 3.2303 -3.2763 1.8580
37 1 6.4214 -3.0331 2.8798
38 1 5.8445 -4.6443 2.3906
39 1 9.3237 -5.4072 3.0121
40 1 3.2800 -5.2233 1.8373
41 1 1.9827 -7.2541 2.3435
42 1 1.6056 -7.9228 4.6831
43 1 2.5347 -6.5665 6.5162
44 1 3.8406 -4.5414 6.0098
45 1 1.6133 -1.7803 1.1087
46 1 1.6827 -0.2849 2.0724
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000246553911.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:59:18
Heat of formation + Delta-G solvation = -46.850546 kcal
Electronic energy + Delta-G solvation = -27109.344373 eV
Core-core repulsion = 23384.967150 eV
Total energy + Delta-G solvation = -3724.377223 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.29566 -39.21577 -38.15758 -35.88207 -35.00239 -32.91716 -31.93810 -30.74703
-30.39451 -29.00253 -28.47594 -25.61105 -24.35949 -24.24026 -22.36793 -22.12617
-21.03850 -20.28666 -19.53229 -17.68664 -16.82048 -16.36936 -16.17673 -15.94775
-15.59603 -15.15125 -14.98839 -14.80810 -14.61299 -14.42464 -14.04197 -13.78102
-13.63615 -13.12120 -12.94415 -12.77546 -12.62237 -12.47064 -12.19633 -12.12759
-11.90692 -11.60892 -11.49901 -11.12394 -10.89585 -10.82829 -10.73268 -10.63816
-10.01551 -9.93068 -9.80382 -9.42581 -9.07345 -8.73678 -8.54896 -8.48183
-8.31991 -8.04223 -5.97041 -3.98471 1.80616 1.84468 2.93537 3.12513
3.36841 3.40619 3.43285 3.53475 4.08838 4.27559 4.49958 4.62261
4.69340 4.75622 4.92848 5.01892 5.13461 5.20540 5.23087 5.26091
5.27475 5.32116 5.37122 5.40850 5.50993 5.51458 5.54522 5.58339
5.72230 5.90537 5.98222 6.18820 6.37609 6.49995 6.55981 6.59532
6.72245 6.79353 6.84843 6.89514 6.99658 7.15741 7.42497 7.63261
7.70622 7.97602 8.01078 8.37748 8.66231 9.04995 9.64287 11.14643
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.012510 B = 0.003975 C = 0.003202
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2237.761330 B = 7041.550836 C = 8741.202552
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.540 5.540
3 C 0.014 3.986
4 C 0.061 3.939
5 O -0.353 6.353
6 C 0.078 3.922
7 H 0.092 0.908
8 C 0.519 3.481
9 O -0.511 6.511
10 N -0.720 5.720
11 C 0.183 3.817
12 H 0.087 0.913
13 C 0.024 3.976
14 C -0.512 4.512
15 H 0.057 0.943
16 C 0.061 3.939
17 N -0.894 5.894
18 Si 0.890 3.110
19 H -0.277 1.277
20 H -0.288 1.288
21 H -0.276 1.276
22 C -0.046 4.046
23 C -0.120 4.120
24 C -0.121 4.121
25 C -0.135 4.135
26 C -0.120 4.120
27 C -0.098 4.098
28 C 0.029 3.971
29 H 0.028 0.972
30 H 0.071 0.929
31 H 0.072 0.928
32 H 0.087 0.913
33 H 0.045 0.955
34 H 0.062 0.938
35 H 0.103 0.897
36 H 0.391 0.609
37 H 0.025 0.975
38 H 0.024 0.976
39 H 0.261 0.739
40 H 0.115 0.885
41 H 0.115 0.885
42 H 0.113 0.887
43 H 0.116 0.884
44 H 0.122 0.878
45 H 0.092 0.908
46 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.265 5.669 -6.749 20.281
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.265 5.265
3 C -0.114 4.114
4 C -0.016 4.016
5 O -0.270 6.270
6 C 0.016 3.984
7 H 0.110 0.890
8 C 0.302 3.698
9 O -0.384 6.384
10 N -0.373 5.373
11 C 0.080 3.920
12 H 0.105 0.895
13 C -0.013 4.013
14 C -0.551 4.551
15 H 0.075 0.925
16 C -0.140 4.140
17 N -0.533 5.533
18 Si 0.718 3.282
19 H -0.202 1.202
20 H -0.213 1.213
21 H -0.202 1.202
22 C -0.047 4.047
23 C -0.138 4.138
24 C -0.139 4.139
25 C -0.153 4.153
26 C -0.139 4.139
27 C -0.116 4.116
28 C -0.100 4.100
29 H 0.046 0.954
30 H 0.089 0.911
31 H 0.091 0.909
32 H 0.106 0.894
33 H 0.063 0.937
34 H 0.080 0.920
35 H 0.121 0.879
36 H 0.226 0.774
37 H 0.043 0.957
38 H 0.042 0.958
39 H 0.070 0.930
40 H 0.133 0.867
41 H 0.133 0.867
42 H 0.131 0.869
43 H 0.134 0.866
44 H 0.140 0.860
45 H 0.110 0.890
46 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -17.296 5.927 -6.534 19.416
hybrid contribution -0.105 -0.519 0.894 1.039
sum -17.401 5.408 -5.641 19.075
Atomic orbital electron populations
1.22393 0.86559 1.02670 1.00742 1.62226 1.08447 1.13749 1.42118
1.22864 0.96902 0.89735 1.01878 1.22735 0.91868 0.96761 0.90247
1.88164 1.69082 1.21800 1.47979 1.21994 0.92528 0.85647 0.98227
0.88986 1.19831 0.81229 0.82266 0.86486 1.90750 1.37770 1.65767
1.44140 1.46192 1.49709 1.09196 1.32230 1.20344 0.94123 0.88932
0.88587 0.89548 1.19429 0.87303 0.97063 0.97551 1.20997 1.00589
1.38205 0.95336 0.92465 1.24934 0.97333 0.96062 0.95713 1.69953
1.14205 1.45914 1.23208 0.86683 0.78716 0.79619 0.83198 1.20232
1.21331 1.20161 1.19883 0.94750 0.96651 0.93413 1.20839 0.98767
0.95660 0.98578 1.20974 0.99674 0.96859 0.96377 1.20980 1.01449
0.99788 0.93073 1.21039 0.98546 0.95481 0.98790 1.20974 0.97299
0.97161 0.96175 1.22702 0.94446 1.00071 0.92740 0.95364 0.91065
0.90910 0.89433 0.93678 0.91992 0.87903 0.77443 0.95669 0.95793
0.92981 0.86675 0.86697 0.86881 0.86622 0.86048 0.88982 0.93126
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.19 9.60 60.07 0.58 0.76 16
2 N -0.54 -5.43 4.99 -242.59 -1.21 -6.64 16
3 C 0.01 0.13 5.66 -3.71 -0.02 0.11 16
4 C 0.06 0.66 7.01 37.20 0.26 0.92 16
5 O -0.35 -5.58 10.01 -55.06 -0.55 -6.13 16
6 C 0.08 1.13 3.22 -27.84 -0.09 1.04 16
7 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16
8 C 0.52 9.58 7.04 -10.98 -0.08 9.51 16
9 O -0.51 -12.01 16.20 -14.28 -0.23 -12.24 16
10 N -0.72 -12.28 5.01 -54.93 -0.28 -12.56 16
11 C 0.18 3.76 2.19 -69.08 -0.15 3.61 16
12 H 0.09 1.94 7.49 -51.93 -0.39 1.55 16
13 C 0.02 0.63 4.68 -27.88 -0.13 0.50 16
14 C -0.51 -14.34 8.53 -34.44 -0.29 -14.64 16
15 H 0.06 1.54 6.79 -52.49 -0.36 1.18 16
16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
17 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16
18 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16
19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
22 C -0.05 -0.85 4.50 -104.62 -0.47 -1.32 16
23 C -0.12 -1.93 9.02 -39.58 -0.36 -2.29 16
24 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16
25 C -0.13 -1.91 10.05 -39.59 -0.40 -2.30 16
26 C -0.12 -1.84 10.05 -39.59 -0.40 -2.24 16
27 C -0.10 -1.72 8.83 -39.58 -0.35 -2.07 16
28 C 0.03 0.33 4.89 -3.71 -0.02 0.32 16
29 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16
30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
32 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16
33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16
34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
35 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16
36 H 0.39 5.31 6.58 -40.82 -0.27 5.04 16
37 H 0.03 0.73 8.08 -51.93 -0.42 0.31 16
38 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16
39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
40 H 0.12 1.65 6.95 -52.49 -0.36 1.29 16
41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16
42 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16
43 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16
44 H 0.12 2.11 7.85 -52.49 -0.41 1.70 16
45 H 0.09 0.90 7.87 -51.93 -0.41 0.49 16
46 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16
LS Contribution 376.62 15.07 5.68 5.68
Total: -1.00 -34.92 376.62 -10.54 -45.46
By element:
Atomic # 1 Polarization: 11.60 SS G_CDS: -7.25 Total: 4.35 kcal
Atomic # 6 Polarization: -6.14 SS G_CDS: -2.41 Total: -8.55 kcal
Atomic # 7 Polarization: -44.80 SS G_CDS: -0.75 Total: -45.55 kcal
Atomic # 8 Polarization: -17.58 SS G_CDS: -0.78 Total: -18.37 kcal
Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -34.92 -10.54 -45.46 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000246553911.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.390 kcal
(2) G-P(sol) polarization free energy of solvation -34.924 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.314 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.461 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.851 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds