Wall clock time and date at job start Tue Mar 31 2020 12:59:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.47017 * 111.00079 * 2 1
4 4 C 1.53092 * 109.25591 * 182.39097 * 3 2 1
5 5 O 1.43020 * 109.29640 * 303.17131 * 4 3 2
6 6 C 1.43017 * 113.73390 * 58.60004 * 5 4 3
7 7 H 1.09005 * 109.50713 * 61.35808 * 6 5 4
8 8 C 1.50697 * 109.50492 * 181.44321 * 6 5 4
9 9 O 1.21287 * 120.00328 * 4.91413 * 8 6 5
10 10 N 1.34781 * 120.00044 * 184.91343 * 8 6 5
11 11 C 1.46500 * 119.99875 * 175.06728 * 10 8 6
12 12 H 1.08994 * 109.47134 * 38.64790 * 11 10 8
13 13 C 1.52998 * 109.47351 * 278.64308 * 11 10 8
14 14 C 1.50699 * 109.47043 * 174.21541 * 13 11 10
15 15 H 1.08000 * 119.99941 * 354.88539 * 14 13 11
16 16 C 1.37874 * 119.99885 * 174.88309 * 14 13 11
17 17 N 1.31512 * 119.99960 * 0.02562 * 16 14 13
18 18 Si 1.86808 * 120.00058 * 179.97438 * 16 14 13
19 19 H 1.48502 * 109.46476 * 60.00284 * 18 16 14
20 20 H 1.48500 * 109.47128 * 179.97438 * 18 16 14
21 21 H 1.48500 * 109.46956 * 300.00370 * 18 16 14
22 22 C 1.50699 * 109.46691 * 158.64582 * 11 10 8
23 23 C 1.38237 * 120.00166 * 39.72705 * 22 11 10
24 24 C 1.38243 * 119.99710 * 179.74298 * 23 22 11
25 25 C 1.38231 * 119.99748 * 0.53190 * 24 23 22
26 26 C 1.38230 * 120.00312 * 359.74358 * 25 24 23
27 27 C 1.38229 * 120.00208 * 359.97438 * 26 25 24
28 28 C 1.47012 * 110.99722 * 123.63460 * 2 1 3
29 29 H 1.09000 * 109.47408 * 296.36813 * 1 2 3
30 30 H 1.09000 * 109.46811 * 56.36257 * 1 2 3
31 31 H 1.08996 * 109.47402 * 176.36357 * 1 2 3
32 32 H 1.09001 * 109.50689 * 302.32846 * 3 2 1
33 33 H 1.09006 * 109.50565 * 62.41015 * 3 2 1
34 34 H 1.08998 * 109.50952 * 63.08666 * 4 3 2
35 35 H 1.09004 * 109.50271 * 183.17021 * 4 3 2
36 36 H 0.96993 * 119.99530 * 355.07161 * 10 8 6
37 37 H 1.08999 * 109.46718 * 54.21940 * 13 11 10
38 38 H 1.08999 * 109.47224 * 294.22040 * 13 11 10
39 39 H 0.97008 * 119.99748 * 179.97438 * 17 16 14
40 40 H 1.07994 * 119.99958 * 359.97438 * 23 22 11
41 41 H 1.08001 * 119.99506 * 180.29513 * 24 23 22
42 42 H 1.08002 * 119.99522 * 179.76917 * 25 24 23
43 43 H 1.08000 * 119.99878 * 180.02562 * 26 25 24
44 44 H 1.07999 * 120.00004 * 179.97438 * 27 26 25
45 45 H 1.08998 * 109.50794 * 57.66963 * 28 2 1
46 46 H 1.09007 * 109.54301 * 297.56032 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9959 1.3725 0.0000
4 6 3.5250 1.3264 -0.0603
5 8 4.0183 0.5571 1.0398
6 6 3.5249 -0.7849 1.0710
7 1 3.8385 -1.3091 0.1682
8 6 4.0741 -1.4949 2.2815
9 8 4.7422 -0.8864 3.0904
10 7 3.8227 -2.8063 2.4653
11 6 4.4445 -3.5217 3.5824
12 1 4.4677 -2.8755 4.4598
13 6 5.8727 -3.9178 3.2027
14 6 6.5597 -4.5265 4.3979
15 1 6.0607 -4.5464 5.3555
16 6 7.8253 -5.0581 4.2688
17 7 8.4331 -5.0335 3.1028
18 14 8.6773 -5.8120 5.7505
19 1 7.8643 -6.9424 6.2667
20 1 10.0181 -6.3095 5.3505
21 1 8.8264 -4.7841 6.8118
22 6 3.6451 -4.7610 3.8923
23 6 3.1187 -5.5193 2.8633
24 6 2.3899 -6.6591 3.1476
25 6 2.1782 -7.0344 4.4610
26 6 2.6997 -6.2730 5.4901
27 6 3.4335 -5.1365 5.2058
28 6 1.9958 -0.7602 1.1427
29 1 -0.3634 0.4564 0.9207
30 1 -0.3633 0.5693 -0.8556
31 1 -0.3634 -1.0255 -0.0652
32 1 1.6134 1.9092 -0.8682
33 1 1.6821 1.8829 0.9107
34 1 3.8386 0.8643 -0.9964
35 1 3.9221 2.3399 -0.0037
36 1 3.2303 -3.2763 1.8580
37 1 6.4214 -3.0331 2.8798
38 1 5.8445 -4.6443 2.3906
39 1 9.3237 -5.4072 3.0121
40 1 3.2800 -5.2233 1.8373
41 1 1.9827 -7.2541 2.3435
42 1 1.6056 -7.9228 4.6831
43 1 2.5347 -6.5665 6.5162
44 1 3.8406 -4.5414 6.0098
45 1 1.6133 -1.7803 1.1087
46 1 1.6827 -0.2849 2.0724
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000246553911.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:59:17
Heat of formation + Delta-G solvation = -71.278967 kcal
Electronic energy + Delta-G solvation = -27110.403669 eV
Core-core repulsion = 23384.967150 eV
Total energy + Delta-G solvation = -3725.436519 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.57144 -40.43266 -39.46458 -36.92764 -36.52149 -34.92500 -33.33629 -31.95637
-31.59594 -30.38591 -29.73862 -27.06302 -25.74429 -25.10437 -23.94933 -23.52911
-22.11842 -21.46020 -21.11137 -19.01961 -18.57042 -17.78396 -17.35642 -17.05249
-16.72112 -16.55127 -16.33070 -16.01122 -15.97487 -15.66526 -15.32546 -15.09197
-14.81840 -14.51835 -14.29140 -14.17765 -14.12362 -13.83898 -13.30956 -13.14316
-13.00606 -12.89112 -12.80512 -12.68707 -12.53507 -12.43783 -11.99732 -11.87311
-11.80488 -11.63976 -11.38465 -10.86327 -10.76013 -10.56267 -10.09656 -9.69236
-9.52477 -9.45184 -8.19645 -6.28531 0.55486 0.62182 1.37167 1.41091
1.46834 1.49515 1.83645 2.40750 2.68663 2.96879 3.06688 3.15171
3.59592 3.69253 3.84849 3.86880 3.94596 4.05891 4.14010 4.25905
4.28942 4.36529 4.45636 4.49037 4.56505 4.61991 4.63201 4.74024
4.77021 4.79810 4.83633 4.89649 5.01763 5.14303 5.20600 5.27337
5.45339 5.52164 5.66181 5.70712 5.74777 5.75905 5.88811 5.89403
5.99547 6.20402 6.23674 6.54088 6.82860 7.21458 7.38736 8.92743
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.012510 B = 0.003975 C = 0.003202
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2237.761330 B = 7041.550836 C = 8741.202552
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 N -0.544 5.544
3 C 0.017 3.983
4 C 0.053 3.947
5 O -0.392 6.392
6 C 0.086 3.914
7 H 0.107 0.893
8 C 0.513 3.487
9 O -0.571 6.571
10 N -0.704 5.704
11 C 0.199 3.801
12 H 0.058 0.942
13 C 0.038 3.962
14 C -0.525 4.525
15 H 0.062 0.938
16 C 0.004 3.996
17 N -0.932 5.932
18 Si 0.958 3.042
19 H -0.262 1.262
20 H -0.283 1.283
21 H -0.272 1.272
22 C -0.072 4.072
23 C -0.128 4.128
24 C -0.117 4.117
25 C -0.128 4.128
26 C -0.123 4.123
27 C -0.122 4.122
28 C 0.038 3.962
29 H 0.026 0.974
30 H 0.089 0.911
31 H 0.082 0.918
32 H 0.117 0.883
33 H 0.037 0.963
34 H 0.071 0.929
35 H 0.118 0.882
36 H 0.411 0.589
37 H -0.024 1.024
38 H 0.006 0.994
39 H 0.262 0.738
40 H 0.127 0.873
41 H 0.150 0.850
42 H 0.150 0.850
43 H 0.140 0.860
44 H 0.109 0.891
45 H 0.112 0.888
46 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.928 3.870 -7.364 22.521
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.269 5.269
3 C -0.111 4.111
4 C -0.023 4.023
5 O -0.311 6.311
6 C 0.025 3.975
7 H 0.125 0.875
8 C 0.298 3.702
9 O -0.449 6.449
10 N -0.358 5.358
11 C 0.095 3.905
12 H 0.076 0.924
13 C 0.000 4.000
14 C -0.564 4.564
15 H 0.081 0.919
16 C -0.194 4.194
17 N -0.573 5.573
18 Si 0.783 3.217
19 H -0.187 1.187
20 H -0.208 1.208
21 H -0.197 1.197
22 C -0.073 4.073
23 C -0.147 4.147
24 C -0.135 4.135
25 C -0.146 4.146
26 C -0.141 4.141
27 C -0.140 4.140
28 C -0.091 4.091
29 H 0.045 0.955
30 H 0.108 0.892
31 H 0.101 0.899
32 H 0.135 0.865
33 H 0.055 0.945
34 H 0.089 0.911
35 H 0.136 0.864
36 H 0.249 0.751
37 H -0.006 1.006
38 H 0.024 0.976
39 H 0.071 0.929
40 H 0.145 0.855
41 H 0.168 0.832
42 H 0.168 0.832
43 H 0.158 0.842
44 H 0.127 0.873
45 H 0.130 0.870
46 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -20.017 4.114 -7.182 21.660
hybrid contribution 0.679 0.061 1.037 1.241
sum -19.338 4.175 -6.144 20.716
Atomic orbital electron populations
1.22490 0.84746 1.03715 1.01463 1.62273 1.09988 1.13859 1.40755
1.22894 0.95681 0.89724 1.02812 1.23039 0.93220 0.96934 0.89107
1.88113 1.70334 1.22438 1.50229 1.21914 0.94424 0.85266 0.95940
0.87530 1.20729 0.80039 0.82358 0.87058 1.90708 1.40543 1.67080
1.46593 1.45971 1.49223 1.08956 1.31635 1.19750 0.92264 0.90089
0.88393 0.92392 1.19173 0.90243 0.94147 0.96406 1.21387 1.01056
1.37818 0.96123 0.91943 1.25861 0.98145 0.96625 0.98724 1.70095
1.14619 1.47060 1.25486 0.85601 0.77668 0.79052 0.79401 1.18676
1.20816 1.19687 1.19712 0.96521 0.96324 0.94746 1.21056 0.98866
0.96232 0.98514 1.21398 0.98350 0.95975 0.97766 1.21460 1.00313
1.00255 0.92531 1.21354 0.97614 0.94434 1.00704 1.21069 0.98796
0.98549 0.95622 1.22595 0.92012 1.01517 0.92933 0.95543 0.89240
0.89936 0.86473 0.94495 0.91098 0.86367 0.75112 1.00553 0.97593
0.92908 0.85503 0.83202 0.83217 0.84170 0.87291 0.86954 0.94649
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.29 9.60 127.69 1.23 1.52 16
2 N -0.54 -9.81 4.99 -921.42 -4.59 -14.40 16
3 C 0.02 0.29 5.66 86.31 0.49 0.78 16
4 C 0.05 1.12 7.01 72.01 0.50 1.62 16
5 O -0.39 -12.81 10.01 -130.02 -1.30 -14.11 16
6 C 0.09 2.55 3.22 29.88 0.10 2.64 16
7 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16
8 C 0.51 20.12 7.04 87.66 0.62 20.74 16
9 O -0.57 -29.12 16.20 15.91 0.26 -28.86 16
10 N -0.70 -25.20 5.01 -446.10 -2.24 -27.44 16
11 C 0.20 8.72 2.19 44.24 0.10 8.82 16
12 H 0.06 2.84 7.49 -2.39 -0.02 2.82 16
13 C 0.04 2.11 4.68 29.85 0.14 2.25 16
14 C -0.53 -30.64 8.53 25.60 0.22 -30.42 16
15 H 0.06 3.49 6.79 -2.91 -0.02 3.47 16
16 C 0.00 0.25 5.46 84.65 0.46 0.71 16
17 N -0.93 -58.38 13.29 21.45 0.28 -58.10 16
18 Si 0.96 45.79 29.54 68.60 2.03 47.82 16
19 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16
20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16
21 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16
22 C -0.07 -2.70 4.50 -19.86 -0.09 -2.79 16
23 C -0.13 -3.96 9.02 22.27 0.20 -3.76 16
24 C -0.12 -2.95 10.05 22.27 0.22 -2.73 16
25 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16
26 C -0.12 -3.48 10.05 22.27 0.22 -3.26 16
27 C -0.12 -4.32 8.83 22.27 0.20 -4.12 16
28 C 0.04 0.85 4.89 86.31 0.42 1.28 16
29 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16
30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16
31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16
32 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16
33 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16
34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16
35 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16
36 H 0.41 11.19 6.58 -92.71 -0.61 10.58 16
37 H -0.02 -1.52 8.08 -2.39 -0.02 -1.54 16
38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16
39 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16
40 H 0.13 3.47 6.95 -2.91 -0.02 3.45 16
41 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16
42 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16
43 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16
44 H 0.11 3.98 7.85 -2.91 -0.02 3.96 16
45 H 0.11 1.99 7.87 -2.39 -0.02 1.97 16
46 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16
Total: -1.00 -81.22 376.62 0.05 -81.17
By element:
Atomic # 1 Polarization: 23.19 SS G_CDS: 0.36 Total: 23.55 kcal
Atomic # 6 Polarization: -14.87 SS G_CDS: 5.25 Total: -9.62 kcal
Atomic # 7 Polarization: -93.39 SS G_CDS: -6.54 Total: -99.93 kcal
Atomic # 8 Polarization: -41.93 SS G_CDS: -1.04 Total: -42.98 kcal
Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal
Total: -81.22 0.05 -81.17 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000246553911.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.892 kcal
(2) G-P(sol) polarization free energy of solvation -81.218 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.326 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.171 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.279 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds