Wall clock time and date at job start Tue Mar 31 2020 12:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21278 * 119.99841 * 2 1 4 4 N 1.34772 * 120.00136 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00514 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47365 * 154.99724 * 5 4 2 7 7 C 1.53001 * 109.46798 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47098 * 299.99619 * 7 6 5 9 9 N 1.46497 * 109.46996 * 180.02562 * 8 7 6 10 10 C 1.39668 * 119.99969 * 155.00355 * 9 8 7 11 11 C 1.39011 * 120.04085 * 359.97438 * 10 9 8 12 12 C 1.38149 * 120.06218 * 180.02562 * 11 10 9 13 13 C 1.38176 * 120.14500 * 359.72293 * 12 11 10 14 14 C 1.38918 * 120.07431 * 0.55384 * 13 12 11 15 15 O 1.35753 * 120.02696 * 179.72007 * 14 13 12 16 16 C 1.34835 * 116.99726 * 174.18640 * 15 14 13 17 17 H 1.08000 * 119.99927 * 5.06436 * 16 15 14 18 18 C 1.38651 * 119.99920 * 185.05751 * 16 15 14 19 19 N 1.31558 * 119.99943 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99837 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47026 * 90.00115 * 20 18 16 22 22 H 1.48508 * 109.46728 * 209.99951 * 20 18 16 23 23 H 1.48500 * 109.47044 * 329.99801 * 20 18 16 24 24 C 1.38757 * 119.94038 * 359.44745 * 14 13 12 25 25 C 1.53002 * 109.46668 * 60.00706 * 8 7 6 26 26 C 1.52997 * 109.47188 * 275.00256 * 5 4 2 27 27 H 1.09005 * 109.47108 * 270.00577 * 1 2 3 28 28 H 1.09005 * 109.47423 * 29.99622 * 1 2 3 29 29 H 1.08995 * 109.47385 * 150.00194 * 1 2 3 30 30 H 0.97005 * 119.99572 * 0.02562 * 4 2 1 31 31 H 1.09005 * 109.46854 * 34.99947 * 5 4 2 32 32 H 1.09001 * 109.46510 * 60.00443 * 6 5 4 33 33 H 1.08995 * 109.46967 * 300.00118 * 6 5 4 34 34 H 1.09003 * 109.46291 * 180.02562 * 7 6 5 35 35 H 1.08989 * 109.47183 * 60.00426 * 7 6 5 36 36 H 1.08992 * 109.47501 * 300.00905 * 8 7 6 37 37 H 0.97005 * 120.00018 * 335.00837 * 9 8 7 38 38 H 1.07992 * 119.96556 * 0.02562 * 11 10 9 39 39 H 1.08004 * 119.92685 * 180.02562 * 12 11 10 40 40 H 1.07999 * 119.96177 * 180.29756 * 13 12 11 41 41 H 0.97001 * 120.00127 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.07612 * 180.29913 * 24 14 13 43 43 H 1.09005 * 109.47283 * 59.99789 * 25 8 7 44 44 H 1.09000 * 109.47088 * 179.97438 * 25 8 7 45 45 H 1.08997 * 109.47583 * 299.99493 * 26 5 4 46 46 H 1.09006 * 109.47118 * 59.99676 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1561 -2.4747 0.6081 7 6 5.6861 -2.4744 0.6080 8 6 6.1960 -2.3482 -0.8290 9 7 7.6610 -2.3485 -0.8291 10 6 8.3591 -2.7619 -1.9659 11 6 7.6648 -3.1736 -3.0976 12 6 8.3549 -3.5830 -4.2222 13 6 9.7366 -3.5793 -4.2280 14 6 10.4365 -3.1744 -3.0983 15 8 11.7940 -3.1765 -3.1032 16 6 12.4108 -2.6595 -2.0214 17 1 11.8293 -2.3434 -1.1680 18 6 13.7915 -2.5339 -2.0045 19 7 14.4997 -2.9187 -3.0443 20 14 14.6460 -1.8183 -0.5055 21 1 14.9824 -2.9117 0.4414 22 1 15.8915 -1.1286 -0.9279 23 1 13.7434 -0.8459 0.1616 24 6 9.7467 -2.7625 -1.9670 25 6 5.6858 -1.0407 -1.4381 26 6 4.1553 -1.0412 -1.4382 27 1 -0.3633 0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6958 -2.0072 -0.0013 31 1 4.0094 -0.3255 0.5884 32 1 3.7925 -3.3164 0.0185 33 1 3.7931 -2.5644 1.6319 34 1 6.0495 -3.4061 1.0416 35 1 6.0493 -1.6329 1.1977 36 1 5.8327 -3.1898 -1.4187 37 1 8.1461 -2.0618 -0.0395 38 1 6.5848 -3.1734 -3.0976 39 1 7.8132 -3.9021 -5.1004 40 1 10.2731 -3.8954 -5.1104 41 1 15.4657 -2.8312 -3.0324 42 1 10.2886 -2.4428 -1.0892 43 1 6.0490 -0.1990 -0.8483 44 1 6.0494 -0.9505 -2.4617 45 1 3.7918 -1.8828 -2.0278 46 1 3.7918 -0.1096 -1.8722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274204816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:34 Heat of formation + Delta-G solvation = -78.199398 kcal Electronic energy + Delta-G solvation = -26028.030515 eV Core-core repulsion = 22302.293903 eV Total energy + Delta-G solvation = -3725.736611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16064 -40.69378 -39.56756 -38.17609 -36.10118 -34.41177 -34.03370 -31.83654 -31.55244 -30.51764 -29.76802 -27.92464 -27.20010 -23.98042 -23.58353 -23.22904 -21.94427 -21.50366 -20.93928 -19.69391 -18.98394 -17.85402 -17.46827 -17.14610 -16.78994 -16.46554 -16.24013 -15.93774 -15.65435 -15.52296 -15.24262 -14.95799 -14.76166 -14.45664 -14.28841 -13.98936 -13.73115 -13.51261 -13.35660 -13.29249 -13.18261 -12.94805 -12.71844 -12.70916 -12.40848 -12.30648 -12.14513 -12.11903 -11.90404 -11.50950 -11.44214 -11.25644 -10.92916 -10.85046 -10.56508 -10.03855 -9.09450 -8.44909 -8.21037 -6.13023 0.77961 0.93577 1.33709 1.44192 1.51413 1.67823 2.18387 2.26439 2.58139 2.89959 3.27659 3.60566 3.66403 3.71027 3.97055 4.05743 4.13770 4.20647 4.24991 4.33182 4.44241 4.46677 4.48729 4.54913 4.62118 4.68817 4.69575 4.75531 4.82985 4.94194 5.06672 5.09614 5.14158 5.15139 5.16254 5.17036 5.19310 5.34151 5.38886 5.50413 5.56933 5.76977 5.82306 6.05699 6.13449 6.63659 6.64087 6.89127 7.00510 7.33448 7.84248 8.78693 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.002391 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.323893 B =11706.656737 C =12427.004081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.500 3.500 3 O -0.606 6.606 4 N -0.713 5.713 5 C 0.143 3.857 6 C -0.108 4.108 7 C -0.119 4.119 8 C 0.156 3.844 9 N -0.741 5.741 10 C 0.259 3.741 11 C -0.262 4.262 12 C -0.027 4.027 13 C -0.263 4.263 14 C 0.151 3.849 15 O -0.233 6.233 16 C -0.409 4.409 17 H 0.098 0.902 18 C -0.026 4.026 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.255 1.255 24 C -0.318 4.318 25 C -0.128 4.128 26 C -0.116 4.116 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.419 0.581 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.398 0.602 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.105 0.895 41 H 0.272 0.728 42 H 0.112 0.888 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.302 -0.350 9.353 31.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.289 3.711 3 O -0.487 6.487 4 N -0.365 5.365 5 C 0.038 3.962 6 C -0.147 4.147 7 C -0.157 4.157 8 C 0.051 3.949 9 N -0.370 5.370 10 C 0.155 3.845 11 C -0.285 4.285 12 C -0.046 4.046 13 C -0.284 4.284 14 C 0.100 3.900 15 O -0.140 6.140 16 C -0.485 4.485 17 H 0.116 0.884 18 C -0.223 4.223 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.179 1.179 24 C -0.342 4.342 25 C -0.168 4.168 26 C -0.155 4.155 27 H 0.127 0.873 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.257 0.743 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.232 0.768 38 H 0.160 0.840 39 H 0.169 0.831 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -29.732 0.271 9.107 31.097 hybrid contribution 1.244 0.352 0.530 1.398 sum -28.488 0.623 9.637 30.080 Atomic orbital electron populations 1.21901 0.88306 1.06111 1.06119 1.21646 0.92321 0.83042 0.74056 1.90726 1.72249 1.33588 1.52155 1.46064 1.06766 1.09229 1.74418 1.20924 0.80051 0.99178 0.96025 1.21663 0.94151 0.96208 1.02638 1.21700 0.95905 1.03357 0.94767 1.21030 0.78690 0.97334 0.97808 1.44786 1.05580 1.73029 1.13564 1.17537 0.89233 0.89804 0.87905 1.20566 0.99815 1.14560 0.93559 1.20832 0.91459 0.94078 0.98182 1.20259 0.95104 1.15738 0.97282 1.19654 0.83643 0.92349 0.94345 1.83948 1.15169 1.72359 1.42487 1.21766 0.90815 1.41593 0.94320 0.88424 1.26587 0.95915 0.97486 1.02291 1.70192 1.07175 1.46931 1.31739 0.84592 0.77599 0.78481 0.75537 1.18685 1.19598 1.17923 1.20526 0.93687 1.19661 1.00311 1.21945 0.95367 0.98237 1.01207 1.21780 0.94439 1.02158 0.97110 0.87280 0.89539 0.87137 0.74330 0.92153 0.88873 0.89372 0.89890 0.91601 0.89403 0.76777 0.83951 0.83096 0.87703 0.91938 0.87006 0.93076 0.92504 0.89774 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.30 71.24 0.73 -0.25 16 2 C 0.50 7.76 7.90 87.66 0.69 8.46 16 3 O -0.61 -16.65 16.76 -3.02 -0.05 -16.70 16 4 N -0.71 -7.28 5.08 -442.54 -2.25 -9.52 16 5 C 0.14 2.02 2.45 44.99 0.11 2.13 16 6 C -0.11 -0.99 5.39 30.60 0.16 -0.82 16 7 C -0.12 -1.63 5.39 30.59 0.16 -1.47 16 8 C 0.16 2.98 2.15 44.99 0.10 3.08 16 9 N -0.74 -19.90 5.25 -319.02 -1.67 -21.57 16 10 C 0.26 9.22 6.63 38.20 0.25 9.48 16 11 C -0.26 -8.41 8.85 22.43 0.20 -8.21 16 12 C -0.03 -0.93 10.03 22.23 0.22 -0.71 16 13 C -0.26 -11.81 9.99 22.42 0.22 -11.59 16 14 C 0.15 7.90 6.64 22.56 0.15 8.05 16 15 O -0.23 -14.60 9.76 -22.82 -0.22 -14.82 16 16 C -0.41 -24.59 9.49 67.92 0.64 -23.95 16 17 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 18 C -0.03 -1.51 5.49 84.83 0.47 -1.04 16 19 N -0.92 -58.02 13.67 21.61 0.30 -57.73 16 20 Si 1.02 44.13 29.55 68.60 2.03 46.16 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 24 C -0.32 -14.45 9.01 22.52 0.20 -14.25 16 25 C -0.13 -2.65 5.44 30.61 0.17 -2.48 16 26 C -0.12 -1.94 5.50 30.61 0.17 -1.77 16 27 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 28 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.42 1.08 8.60 -92.70 -0.80 0.28 16 31 H 0.06 1.23 7.58 -2.38 -0.02 1.21 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 1.58 6.48 -2.39 -0.02 1.57 16 37 H 0.40 10.26 8.61 -92.70 -0.80 9.46 16 38 H 0.14 3.52 6.11 -2.91 -0.02 3.51 16 39 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 40 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 41 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.11 5.22 5.64 -2.91 -0.02 5.20 16 43 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.06 1.38 7.71 -2.39 -0.02 1.36 16 45 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -83.16 373.82 2.20 -80.96 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.59 Total: 28.56 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: 4.66 Total: -35.33 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -3.63 Total: -88.82 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.27 Total: -31.52 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -83.16 2.20 -80.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274204816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.762 kcal (2) G-P(sol) polarization free energy of solvation -83.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds