Wall clock time and date at job start Tue Mar 31 2020 12:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46868 * 124.33730 * 2 1 4 4 C 1.54480 * 105.42211 * 197.01988 * 3 2 1 5 5 H 1.08991 * 110.97201 * 216.44153 * 4 3 2 6 6 N 1.46907 * 110.96950 * 92.71212 * 4 3 2 7 7 C 1.46897 * 110.99552 * 158.08836 * 6 4 3 8 8 C 1.50707 * 109.47104 * 180.02562 * 7 6 4 9 9 C 1.38292 * 119.97181 * 89.99533 * 8 7 6 10 10 C 1.38239 * 120.10948 * 180.02562 * 9 8 7 11 11 C 1.38166 * 120.05670 * 359.97438 * 10 9 8 12 12 C 1.38710 * 119.94376 * 0.02562 * 11 10 9 13 13 O 1.35901 * 120.05259 * 179.97438 * 12 11 10 14 14 C 1.42895 * 117.00475 * 359.97438 * 13 12 11 15 15 C 1.52997 * 109.47269 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47238 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47293 * 89.99746 * 20 18 16 22 22 H 1.48504 * 109.47104 * 209.99992 * 20 18 16 23 23 H 1.48495 * 109.47249 * 329.99739 * 20 18 16 24 24 C 1.38119 * 119.97002 * 270.25605 * 8 7 6 25 25 C 1.54634 * 101.79921 * 334.58032 * 4 3 2 26 26 C 1.34411 * 124.35045 * 180.02562 * 2 1 3 27 27 O 1.21287 * 124.94425 * 359.55013 * 26 2 1 28 28 H 1.09001 * 109.47612 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47350 * 299.98057 * 1 2 3 30 30 H 1.09009 * 109.47087 * 59.97799 * 1 2 3 31 31 H 1.08994 * 110.25823 * 78.04179 * 3 2 1 32 32 H 1.09000 * 110.28150 * 316.00733 * 3 2 1 33 33 H 1.00907 * 110.99532 * 34.13823 * 6 4 3 34 34 H 1.08993 * 109.47767 * 60.00505 * 7 6 4 35 35 H 1.09008 * 109.47477 * 299.99761 * 7 6 4 36 36 H 1.07999 * 119.94119 * 0.02562 * 9 8 7 37 37 H 1.07996 * 119.97207 * 179.97438 * 10 9 8 38 38 H 1.08005 * 120.02909 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.47102 * 60.00155 * 14 13 12 40 40 H 1.09004 * 109.47055 * 300.00096 * 14 13 12 41 41 H 1.09001 * 109.46832 * 60.00112 * 15 14 13 42 42 H 1.09000 * 109.47611 * 300.00409 * 15 14 13 43 43 H 0.97004 * 119.99507 * 180.02562 * 19 18 16 44 44 H 1.07999 * 120.02724 * 0.02562 * 24 8 7 45 45 H 1.09002 * 110.48558 * 143.49640 * 25 4 3 46 46 H 1.09003 * 110.48076 * 266.00500 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2934 1.2127 0.0000 4 6 3.7009 0.7487 -0.4359 5 1 4.4757 1.3009 0.0958 6 7 3.8704 0.8781 -1.8894 7 6 5.2929 0.9484 -2.2492 8 6 5.4269 1.0810 -3.7444 9 6 5.4552 2.3348 -4.3271 10 6 5.5775 2.4597 -5.6984 11 6 5.6723 1.3315 -6.4903 12 6 5.6442 0.0727 -5.9083 13 8 5.7367 -1.0385 -6.6851 14 6 5.8604 -0.8366 -8.0943 15 6 5.9518 -2.1922 -8.7977 16 6 6.0816 -1.9792 -10.2840 17 1 6.0977 -0.9772 -10.6865 18 6 6.1798 -3.0636 -11.1298 19 7 6.1597 -4.2838 -10.6397 20 14 6.3414 -2.7995 -12.9720 21 1 7.7783 -2.7017 -13.3340 22 1 5.7263 -3.9435 -13.6919 23 1 5.6480 -1.5434 -13.3547 24 6 5.5159 -0.0501 -4.5321 25 6 3.6897 -0.7378 -0.0102 26 6 2.2234 -1.1097 -0.0005 27 8 1.7946 -2.2442 0.0068 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5135 0.8901 30 1 -0.3634 0.5142 -0.8899 31 1 2.3313 1.6439 1.0003 32 1 1.8991 1.9396 -0.7101 33 1 3.3681 1.6790 -2.2421 34 1 5.7969 0.0405 -1.9181 35 1 5.7476 1.8133 -1.7660 36 1 5.3816 3.2179 -3.7097 37 1 5.5989 3.4400 -6.1511 38 1 5.7674 1.4295 -7.5617 39 1 6.7614 -0.2590 -8.3009 40 1 4.9890 -0.2943 -8.4615 41 1 5.0511 -2.7702 -8.5912 42 1 6.8234 -2.7341 -8.4305 43 1 6.2291 -5.0467 -11.2348 44 1 5.4891 -1.0291 -4.0770 45 1 4.2326 -1.3459 -0.7339 46 1 4.1216 -0.8531 0.9839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338954356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:20 Heat of formation + Delta-G solvation = -72.920671 kcal Electronic energy + Delta-G solvation = -25361.140891 eV Core-core repulsion = 21635.633182 eV Total energy + Delta-G solvation = -3725.507709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41819 -41.02064 -38.91966 -37.88203 -36.02547 -35.45969 -33.20741 -32.58927 -31.24804 -30.43763 -28.50873 -27.34757 -26.99150 -25.70346 -23.54668 -23.26972 -22.03536 -21.57359 -20.57990 -19.11909 -18.16654 -17.70897 -17.57550 -17.01011 -16.94561 -16.84162 -16.56502 -16.44588 -16.13061 -15.52603 -14.94522 -14.73647 -14.51179 -14.43409 -14.34313 -14.30032 -14.14447 -13.61615 -13.32319 -13.23626 -13.03796 -13.01254 -12.89403 -12.66060 -12.56107 -12.53191 -12.35094 -12.15482 -11.79453 -11.59955 -11.56948 -11.38572 -10.93662 -10.64142 -9.84452 -9.67949 -9.34630 -9.06597 -8.28297 -6.42664 0.36895 0.56325 1.39451 1.42315 1.53464 1.58842 2.15035 2.27045 2.51487 2.76117 3.05916 3.29988 3.41978 3.46318 3.89518 3.94138 4.05383 4.17985 4.24003 4.24252 4.34001 4.37085 4.45266 4.48297 4.52601 4.58163 4.65236 4.68959 4.71348 4.73589 4.84645 4.85576 4.90650 4.97879 5.14136 5.29670 5.43606 5.47366 5.55407 5.58142 5.62826 5.67674 5.92322 6.04204 6.08088 6.12397 6.47992 6.58795 6.72300 7.17183 7.27693 8.85034 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.002180 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.848313 B =12840.495214 C =13909.605037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.622 5.622 3 C 0.104 3.896 4 C 0.082 3.918 5 H 0.114 0.886 6 N -0.695 5.695 7 C 0.109 3.891 8 C -0.045 4.045 9 C -0.147 4.147 10 C -0.079 4.079 11 C -0.225 4.225 12 C 0.101 3.899 13 O -0.347 6.347 14 C 0.087 3.913 15 C 0.027 3.973 16 C -0.546 4.546 17 H 0.072 0.928 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.979 3.021 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.258 1.258 24 C -0.156 4.156 25 C -0.146 4.146 26 C 0.507 3.493 27 O -0.599 6.599 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.356 0.644 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.123 0.877 39 H 0.060 0.940 40 H 0.058 0.942 41 H -0.005 1.005 42 H -0.003 1.003 43 H 0.267 0.733 44 H 0.114 0.886 45 H 0.090 0.910 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.203 22.300 25.262 34.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.355 5.355 3 C -0.018 4.018 4 C -0.028 4.028 5 H 0.132 0.868 6 N -0.330 5.330 7 C -0.019 4.019 8 C -0.046 4.046 9 C -0.165 4.165 10 C -0.097 4.097 11 C -0.244 4.244 12 C 0.056 3.944 13 O -0.261 6.261 14 C 0.012 3.988 15 C -0.010 4.010 16 C -0.584 4.584 17 H 0.090 0.910 18 C -0.199 4.199 19 N -0.571 5.571 20 Si 0.802 3.198 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.182 1.182 24 C -0.175 4.175 25 C -0.186 4.186 26 C 0.296 3.704 27 O -0.481 6.481 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.177 0.823 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.177 0.823 37 H 0.169 0.831 38 H 0.141 0.859 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.014 0.986 42 H 0.016 0.984 43 H 0.076 0.924 44 H 0.132 0.868 45 H 0.109 0.891 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.574 20.698 25.171 33.061 hybrid contribution 0.130 -0.113 -1.235 1.247 sum -5.444 20.586 23.935 32.036 Atomic orbital electron populations 1.21658 0.77700 1.02754 1.03229 1.48311 1.07143 1.07731 1.72308 1.22577 0.88843 0.86328 1.04074 1.22534 0.97599 0.94245 0.88386 0.86831 1.60317 1.11011 1.49661 1.12001 1.20880 0.89131 1.02769 0.89124 1.19739 0.97114 0.91714 0.95999 1.21259 1.03317 0.97292 0.94660 1.21250 0.96292 0.97991 0.94141 1.21501 1.09240 0.92424 1.01193 1.19592 0.96689 0.86311 0.91856 1.86086 1.87782 1.31778 1.20486 1.22822 1.00164 0.99758 0.76013 1.18974 0.95808 0.91536 0.94673 1.21391 1.51673 0.93810 0.91479 0.91007 1.26094 0.94199 0.94550 1.05063 1.70137 1.50425 0.99045 1.37539 0.85247 0.78795 0.78281 0.77510 1.19391 1.20670 1.18211 1.20441 1.06896 1.00165 0.90007 1.22490 0.92280 0.98850 1.05012 1.21555 0.91140 0.83947 0.73731 1.90689 1.80004 1.23768 1.53605 0.92581 0.89532 0.90806 0.87292 0.88349 0.82303 0.90467 0.90338 0.82258 0.83082 0.85921 0.92144 0.92400 0.98636 0.98423 0.92421 0.86803 0.89149 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 11.14 127.77 1.42 2.58 16 2 N -0.62 -9.51 3.34 -842.65 -2.81 -12.32 16 3 C 0.10 0.60 7.05 86.81 0.61 1.22 16 4 C 0.08 0.61 3.45 45.97 0.16 0.77 16 5 H 0.11 0.12 7.87 -2.39 -0.02 0.10 16 6 N -0.70 -8.43 6.34 -490.10 -3.11 -11.54 16 7 C 0.11 1.39 5.69 85.56 0.49 1.88 16 8 C -0.05 -0.93 5.39 -19.88 -0.11 -1.04 16 9 C -0.15 -2.53 9.70 22.28 0.22 -2.32 16 10 C -0.08 -1.69 10.04 22.25 0.22 -1.47 16 11 C -0.22 -6.80 9.04 22.37 0.20 -6.60 16 12 C 0.10 3.64 6.69 22.51 0.15 3.79 16 13 O -0.35 -15.59 10.14 -92.44 -0.94 -16.52 16 14 C 0.09 3.97 4.68 71.98 0.34 4.30 16 15 C 0.03 1.55 5.34 29.85 0.16 1.71 16 16 C -0.55 -31.53 9.11 25.60 0.23 -31.30 16 17 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 18 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 19 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 20 Si 0.98 44.18 29.54 68.60 2.03 46.21 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 24 C -0.16 -4.75 9.64 22.36 0.22 -4.54 16 25 C -0.15 -2.11 6.58 30.59 0.20 -1.91 16 26 C 0.51 11.70 8.02 87.90 0.71 12.41 16 27 O -0.60 -20.68 17.35 -3.05 -0.05 -20.73 16 28 H 0.06 1.04 7.53 -2.39 -0.02 1.02 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.10 0.31 7.61 -2.39 -0.02 0.29 16 33 H 0.36 3.34 8.13 -89.69 -0.73 2.62 16 34 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 35 H 0.08 0.51 8.03 -2.38 -0.02 0.49 16 36 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 37 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.12 3.76 6.30 -2.91 -0.02 3.74 16 39 H 0.06 2.58 7.66 -2.39 -0.02 2.56 16 40 H 0.06 2.50 7.66 -2.38 -0.02 2.48 16 41 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.11 3.66 8.06 -2.91 -0.02 3.64 16 45 H 0.09 1.72 8.09 -2.39 -0.02 1.70 16 46 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -83.02 384.37 1.33 -81.69 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.24 Total: 11.12 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 5.68 Total: -20.09 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -5.63 Total: -81.67 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.99 Total: -37.26 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -83.02 1.33 -81.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338954356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.768 kcal (2) G-P(sol) polarization free energy of solvation -83.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds