Wall clock time and date at job start Tue Mar 31 2020 12:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21283 * 119.99909 * 2 1 4 4 N 1.34775 * 120.00346 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99873 * 5.07228 * 4 2 1 6 6 C 1.53000 * 109.47563 * 275.12875 * 5 4 2 7 7 C 1.50700 * 109.47400 * 179.97438 * 6 5 4 8 8 O 1.21276 * 119.99943 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99717 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99777 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46964 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46903 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00354 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99659 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00518 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99576 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47361 * 60.00171 * 16 14 12 18 18 H 1.48506 * 109.47233 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47468 * 299.99826 * 16 14 12 20 20 C 1.46501 * 120.00375 * 185.06950 * 4 2 1 21 21 C 1.50697 * 109.47186 * 265.00878 * 20 4 2 22 22 C 1.38236 * 119.99824 * 90.00192 * 21 20 4 23 23 C 1.38240 * 119.99727 * 179.97438 * 22 21 20 24 24 C 1.38233 * 120.00072 * 359.97102 * 23 22 21 25 25 C 1.38235 * 120.00029 * 0.28304 * 24 23 22 26 26 C 1.38228 * 120.00088 * 269.97367 * 21 20 4 27 27 H 1.09001 * 109.47479 * 264.72839 * 1 2 3 28 28 H 1.08999 * 109.47547 * 24.73012 * 1 2 3 29 29 H 1.09002 * 109.47172 * 144.73053 * 1 2 3 30 30 H 1.09006 * 109.46982 * 35.12853 * 5 4 2 31 31 H 1.09002 * 109.47744 * 155.12662 * 5 4 2 32 32 H 1.09006 * 109.46953 * 299.99994 * 6 5 4 33 33 H 1.09007 * 109.46630 * 59.99669 * 6 5 4 34 34 H 0.96996 * 119.99625 * 0.02562 * 9 7 6 35 35 H 1.08996 * 109.47258 * 300.00636 * 10 9 7 36 36 H 1.09000 * 109.46796 * 60.00607 * 10 9 7 37 37 H 1.08996 * 109.47463 * 300.00278 * 11 10 9 38 38 H 1.09000 * 109.47058 * 60.00535 * 11 10 9 39 39 H 0.96994 * 120.00721 * 180.02562 * 15 14 12 40 40 H 1.09000 * 109.46846 * 145.00484 * 20 4 2 41 41 H 1.09004 * 109.46752 * 25.01266 * 20 4 2 42 42 H 1.07993 * 120.00347 * 359.97117 * 22 21 20 43 43 H 1.08003 * 119.99751 * 180.02562 * 23 22 21 44 44 H 1.08003 * 119.99678 * 180.02562 * 24 23 22 45 45 H 1.07995 * 119.99753 * 179.72447 * 25 24 23 46 46 H 1.08005 * 120.00132 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4527 -2.4334 -0.1111 6 6 0.9777 -2.8726 1.2754 7 6 0.2282 -4.1750 1.1605 8 8 0.0873 -4.6999 0.0763 9 7 -0.2856 -4.7563 2.2626 10 6 -1.0148 -6.0220 2.1508 11 6 -1.4896 -6.4612 3.5374 12 6 -2.2391 -7.7635 3.4224 13 1 -2.3639 -8.2314 2.4570 14 6 -2.7655 -8.3577 4.5498 15 7 -2.6140 -7.7878 5.7252 16 14 -3.6940 -9.9723 4.4074 17 1 -2.7968 -11.0109 3.8402 18 1 -4.1550 -10.3986 5.7532 19 1 -4.8677 -9.7916 3.5159 20 6 3.6416 -1.1696 0.1126 21 6 4.2510 -1.2320 -1.2642 22 6 4.5364 -0.0646 -1.9473 23 6 5.0959 -0.1218 -3.2101 24 6 5.3705 -1.3465 -3.7895 25 6 5.0801 -2.5139 -3.1086 26 6 4.5250 -2.4566 -1.8439 27 1 -0.3634 -0.0944 1.0233 28 1 -0.3634 0.9334 -0.4299 29 1 -0.3633 -0.8390 -0.5934 30 1 0.5909 -2.3006 -0.7652 31 1 2.1110 -3.1957 -0.5279 32 1 1.8396 -3.0055 1.9295 33 1 0.3194 -2.1104 1.6922 34 1 -0.1732 -4.3362 3.1296 35 1 -1.8768 -5.8882 1.4974 36 1 -0.3572 -6.7844 1.7332 37 1 -0.6278 -6.5948 4.1911 38 1 -2.1473 -5.6986 3.9545 39 1 -2.9840 -8.2059 6.5184 40 1 3.9601 -2.0370 0.6907 41 1 3.9690 -0.2588 0.6140 42 1 4.3224 0.8922 -1.4944 43 1 5.3194 0.7903 -3.7436 44 1 5.8080 -1.3911 -4.7760 45 1 5.2905 -3.4707 -3.5632 46 1 4.3020 -3.3687 -1.3102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342647845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:46 Heat of formation + Delta-G solvation = -64.087698 kcal Electronic energy + Delta-G solvation = -25625.732745 eV Core-core repulsion = 21900.608063 eV Total energy + Delta-G solvation = -3725.124682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51832 -39.35304 -39.00320 -36.18872 -34.94237 -32.99819 -32.83878 -31.12701 -30.94267 -29.87527 -29.42535 -26.26839 -25.21414 -23.80183 -22.72244 -21.76294 -21.05473 -20.15775 -19.31631 -17.44688 -17.22615 -16.93574 -16.45442 -16.02466 -15.79467 -15.44957 -15.23780 -15.13262 -14.90887 -14.49810 -13.95459 -13.80496 -13.64030 -13.55179 -13.13438 -12.99619 -12.72058 -12.66813 -12.55661 -12.37705 -12.27516 -11.97694 -11.53973 -11.29252 -11.27254 -11.17368 -11.05725 -10.70451 -10.38790 -10.10723 -9.91879 -9.57358 -9.32154 -9.13887 -9.08791 -8.91217 -8.62115 -8.42138 -6.13844 -4.17112 1.03215 1.18640 2.38667 2.71716 2.86545 3.27849 3.32072 3.34619 3.58275 3.68183 4.32869 4.39011 4.50410 4.62745 4.68118 4.72376 4.78585 4.90098 4.93136 5.00029 5.12333 5.19136 5.23159 5.24457 5.35431 5.38963 5.41195 5.46295 5.54524 5.74943 5.82578 5.84465 6.18601 6.22911 6.26069 6.27278 6.28673 6.37313 6.66310 6.76734 6.81527 7.09710 7.45067 7.55166 7.83395 7.90095 7.91774 8.21759 8.52551 8.88590 9.48001 10.97595 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021272 B = 0.002128 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.948217 B =13152.789076 C =13996.426187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.516 3.484 3 O -0.546 6.546 4 N -0.608 5.608 5 C 0.125 3.875 6 C -0.163 4.163 7 C 0.508 3.492 8 O -0.552 6.552 9 N -0.721 5.721 10 C 0.121 3.879 11 C 0.013 3.987 12 C -0.524 4.524 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.152 3.848 21 C -0.107 4.107 22 C -0.096 4.096 23 C -0.126 4.126 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.105 4.105 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.398 0.602 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.263 0.737 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.946 15.952 -13.067 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.305 3.695 3 O -0.424 6.424 4 N -0.341 5.341 5 C 0.001 3.999 6 C -0.205 4.205 7 C 0.293 3.707 8 O -0.431 6.431 9 N -0.370 5.370 10 C -0.001 4.001 11 C -0.025 4.025 12 C -0.562 4.562 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C 0.029 3.971 21 C -0.108 4.108 22 C -0.115 4.115 23 C -0.144 4.144 24 C -0.136 4.136 25 C -0.141 4.141 26 C -0.124 4.124 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.232 0.768 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.095 16.096 -13.627 25.366 hybrid contribution -0.527 -0.871 0.506 1.136 sum 13.568 15.225 -13.122 24.250 Atomic orbital electron populations 1.22046 0.91664 1.05257 1.04949 1.20852 0.90719 0.82976 0.74934 1.90685 1.70794 1.31074 1.49812 1.48096 1.06312 1.06538 1.73114 1.21378 0.97825 0.84893 0.95756 1.22128 1.01760 0.96522 1.00058 1.20355 0.79600 0.86085 0.84696 1.90694 1.59859 1.65434 1.27130 1.46368 1.55612 1.25597 1.09466 1.21737 0.94539 0.82341 1.01510 1.19318 0.96690 0.96872 0.89599 1.21006 1.35044 1.06294 0.93875 0.92303 1.24998 0.96166 0.97846 0.95269 1.69933 1.45534 1.39413 0.98367 0.86567 0.80236 0.83533 0.77169 1.20101 1.21230 1.20089 1.20389 0.79304 1.04129 0.93235 1.20206 0.99863 0.93428 0.97303 1.21196 0.97312 0.98364 0.94631 1.21174 0.99719 0.97806 0.95658 1.21185 0.99947 0.92688 0.99816 1.21155 0.99525 0.98403 0.95054 1.21121 0.98494 0.97196 0.95549 0.88628 0.89007 0.89514 0.89191 0.89084 0.88566 0.88725 0.76812 0.92505 0.92523 0.95971 0.95950 0.92745 0.89588 0.88742 0.85575 0.86199 0.86239 0.86006 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 9.11 36.00 0.33 -1.10 16 2 C 0.52 5.50 7.73 -10.99 -0.09 5.42 16 3 O -0.55 -7.56 16.45 5.56 0.09 -7.47 16 4 N -0.61 -5.69 2.47 -175.06 -0.43 -6.13 16 5 C 0.12 1.16 4.45 -4.04 -0.02 1.15 16 6 C -0.16 -1.53 5.93 -27.88 -0.17 -1.69 16 7 C 0.51 7.22 7.83 -10.98 -0.09 7.14 16 8 O -0.55 -9.86 15.98 5.56 0.09 -9.77 16 9 N -0.72 -11.19 5.56 -60.30 -0.33 -11.52 16 10 C 0.12 2.41 5.61 -4.04 -0.02 2.39 16 11 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 12 C -0.52 -14.14 9.11 -34.44 -0.31 -14.45 16 13 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 16 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.15 1.35 5.53 -5.19 -0.03 1.32 16 21 C -0.11 -1.04 5.46 -104.63 -0.57 -1.61 16 22 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 23 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 25 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 26 C -0.11 -0.97 9.48 -39.58 -0.38 -1.34 16 27 H 0.10 0.64 7.66 -51.93 -0.40 0.24 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.63 6.10 -51.93 -0.32 0.32 16 30 H 0.09 0.87 6.14 -51.93 -0.32 0.55 16 31 H 0.09 0.89 7.53 -51.93 -0.39 0.50 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.74 7.09 -51.93 -0.37 0.38 16 34 H 0.40 5.29 8.47 -40.82 -0.35 4.94 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 41 H 0.09 0.90 7.29 -51.93 -0.38 0.52 16 42 H 0.13 1.34 7.85 -52.49 -0.41 0.93 16 43 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 46 H 0.12 0.99 7.82 -52.48 -0.41 0.58 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -32.94 388.33 -9.28 -42.22 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.10 Total: 2.60 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -3.15 Total: -6.87 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.03 Total: -42.50 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.18 Total: -17.24 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.94 -9.28 -42.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342647845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.872 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds