Wall clock time and date at job start Tue Mar 31 2020 12:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21283 * 119.99909 * 2 1 4 4 N 1.34775 * 120.00346 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99873 * 5.07228 * 4 2 1 6 6 C 1.53000 * 109.47563 * 275.12875 * 5 4 2 7 7 C 1.50700 * 109.47400 * 179.97438 * 6 5 4 8 8 O 1.21276 * 119.99943 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99717 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99777 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46964 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46903 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00354 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99659 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00518 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99576 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47361 * 60.00171 * 16 14 12 18 18 H 1.48506 * 109.47233 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47468 * 299.99826 * 16 14 12 20 20 C 1.46501 * 120.00375 * 185.06950 * 4 2 1 21 21 C 1.50697 * 109.47186 * 265.00878 * 20 4 2 22 22 C 1.38236 * 119.99824 * 90.00192 * 21 20 4 23 23 C 1.38240 * 119.99727 * 179.97438 * 22 21 20 24 24 C 1.38233 * 120.00072 * 359.97102 * 23 22 21 25 25 C 1.38235 * 120.00029 * 0.28304 * 24 23 22 26 26 C 1.38228 * 120.00088 * 269.97367 * 21 20 4 27 27 H 1.09001 * 109.47479 * 264.72839 * 1 2 3 28 28 H 1.08999 * 109.47547 * 24.73012 * 1 2 3 29 29 H 1.09002 * 109.47172 * 144.73053 * 1 2 3 30 30 H 1.09006 * 109.46982 * 35.12853 * 5 4 2 31 31 H 1.09002 * 109.47744 * 155.12662 * 5 4 2 32 32 H 1.09006 * 109.46953 * 299.99994 * 6 5 4 33 33 H 1.09007 * 109.46630 * 59.99669 * 6 5 4 34 34 H 0.96996 * 119.99625 * 0.02562 * 9 7 6 35 35 H 1.08996 * 109.47258 * 300.00636 * 10 9 7 36 36 H 1.09000 * 109.46796 * 60.00607 * 10 9 7 37 37 H 1.08996 * 109.47463 * 300.00278 * 11 10 9 38 38 H 1.09000 * 109.47058 * 60.00535 * 11 10 9 39 39 H 0.96994 * 120.00721 * 180.02562 * 15 14 12 40 40 H 1.09000 * 109.46846 * 145.00484 * 20 4 2 41 41 H 1.09004 * 109.46752 * 25.01266 * 20 4 2 42 42 H 1.07993 * 120.00347 * 359.97117 * 22 21 20 43 43 H 1.08003 * 119.99751 * 180.02562 * 23 22 21 44 44 H 1.08003 * 119.99678 * 180.02562 * 24 23 22 45 45 H 1.07995 * 119.99753 * 179.72447 * 25 24 23 46 46 H 1.08005 * 120.00132 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4527 -2.4334 -0.1111 6 6 0.9777 -2.8726 1.2754 7 6 0.2282 -4.1750 1.1605 8 8 0.0873 -4.6999 0.0763 9 7 -0.2856 -4.7563 2.2626 10 6 -1.0148 -6.0220 2.1508 11 6 -1.4896 -6.4612 3.5374 12 6 -2.2391 -7.7635 3.4224 13 1 -2.3639 -8.2314 2.4570 14 6 -2.7655 -8.3577 4.5498 15 7 -2.6140 -7.7878 5.7252 16 14 -3.6940 -9.9723 4.4074 17 1 -2.7968 -11.0109 3.8402 18 1 -4.1550 -10.3986 5.7532 19 1 -4.8677 -9.7916 3.5159 20 6 3.6416 -1.1696 0.1126 21 6 4.2510 -1.2320 -1.2642 22 6 4.5364 -0.0646 -1.9473 23 6 5.0959 -0.1218 -3.2101 24 6 5.3705 -1.3465 -3.7895 25 6 5.0801 -2.5139 -3.1086 26 6 4.5250 -2.4566 -1.8439 27 1 -0.3634 -0.0944 1.0233 28 1 -0.3634 0.9334 -0.4299 29 1 -0.3633 -0.8390 -0.5934 30 1 0.5909 -2.3006 -0.7652 31 1 2.1110 -3.1957 -0.5279 32 1 1.8396 -3.0055 1.9295 33 1 0.3194 -2.1104 1.6922 34 1 -0.1732 -4.3362 3.1296 35 1 -1.8768 -5.8882 1.4974 36 1 -0.3572 -6.7844 1.7332 37 1 -0.6278 -6.5948 4.1911 38 1 -2.1473 -5.6986 3.9545 39 1 -2.9840 -8.2059 6.5184 40 1 3.9601 -2.0370 0.6907 41 1 3.9690 -0.2588 0.6140 42 1 4.3224 0.8922 -1.4944 43 1 5.3194 0.7903 -3.7436 44 1 5.8080 -1.3911 -4.7760 45 1 5.2905 -3.4707 -3.5632 46 1 4.3020 -3.3687 -1.3102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342647845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:45 Heat of formation + Delta-G solvation = -83.630380 kcal Electronic energy + Delta-G solvation = -25626.580179 eV Core-core repulsion = 21900.608063 eV Total energy + Delta-G solvation = -3725.972116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.34543 -40.49199 -39.76578 -37.10122 -36.47257 -34.78356 -33.67406 -32.10478 -31.79232 -30.92319 -30.53279 -27.23976 -26.59211 -24.97771 -23.43163 -22.78629 -22.44938 -21.36605 -20.08575 -18.60429 -18.23200 -18.04812 -17.67131 -16.93475 -16.79612 -16.60568 -16.45669 -16.25977 -15.85604 -15.74319 -15.29239 -14.76600 -14.36102 -14.30716 -14.28401 -14.12580 -14.05792 -13.56031 -13.39985 -13.25223 -13.19412 -13.08416 -12.90239 -12.69537 -12.53155 -12.24710 -12.17598 -12.01151 -11.85042 -11.64149 -11.45513 -10.95915 -10.83516 -10.58560 -9.95028 -9.86658 -9.83425 -9.66883 -8.22831 -6.32946 0.34296 0.48695 1.43070 1.44651 1.52605 1.57763 1.72191 1.91676 2.36716 2.54471 2.93827 3.12046 3.58748 3.77986 3.88014 3.94569 3.96744 4.11206 4.14896 4.28488 4.30023 4.40092 4.53099 4.53633 4.56635 4.59209 4.65991 4.69230 4.73553 4.76906 4.88422 4.90607 5.09191 5.14842 5.16699 5.34582 5.43884 5.53078 5.55621 5.60853 5.61809 5.67053 5.81435 6.09852 6.18472 6.32645 6.68813 6.80817 7.11871 7.34467 7.36391 8.88471 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021272 B = 0.002128 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.948217 B =13152.789076 C =13996.426187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.510 3.490 3 O -0.584 6.584 4 N -0.600 5.600 5 C 0.129 3.871 6 C -0.148 4.148 7 C 0.511 3.489 8 O -0.588 6.588 9 N -0.719 5.719 10 C 0.141 3.859 11 C 0.022 3.978 12 C -0.547 4.547 13 H 0.059 0.941 14 C 0.007 3.993 15 N -0.926 5.926 16 Si 0.962 3.038 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.150 3.850 21 C -0.115 4.115 22 C -0.114 4.114 23 C -0.134 4.134 24 C -0.123 4.123 25 C -0.131 4.131 26 C -0.114 4.114 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.411 0.589 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.265 0.735 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.134 0.866 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.071 15.522 -13.609 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.301 3.699 3 O -0.464 6.464 4 N -0.332 5.332 5 C 0.006 3.994 6 C -0.189 4.189 7 C 0.299 3.701 8 O -0.469 6.469 9 N -0.370 5.370 10 C 0.017 3.983 11 C -0.016 4.016 12 C -0.585 4.585 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.565 5.565 16 Si 0.787 3.213 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.193 1.193 20 C 0.028 3.972 21 C -0.116 4.116 22 C -0.133 4.133 23 C -0.151 4.151 24 C -0.141 4.141 25 C -0.149 4.149 26 C -0.132 4.132 27 H 0.131 0.869 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.247 0.753 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.131 0.869 43 H 0.152 0.848 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 14.232 15.673 -14.167 25.474 hybrid contribution -0.520 -0.712 0.634 1.087 sum 13.712 14.961 -13.532 24.392 Atomic orbital electron populations 1.22080 0.89571 1.05752 1.06210 1.21354 0.91789 0.82631 0.74149 1.90673 1.71721 1.32359 1.51666 1.48071 1.06495 1.06253 1.72351 1.21316 0.97737 0.84618 0.95703 1.22072 1.02278 0.93911 1.00645 1.21081 0.78690 0.86986 0.83390 1.90685 1.61060 1.66705 1.28430 1.46190 1.55578 1.24359 1.10856 1.21179 0.94344 0.84189 0.98610 1.19133 0.95515 0.95547 0.91388 1.21464 1.35411 1.07650 0.94002 0.92308 1.25855 0.97068 1.01336 0.94958 1.70037 1.46518 1.40976 0.99017 0.85538 0.79056 0.79362 0.77337 1.19376 1.20776 1.19349 1.20462 0.79020 1.04536 0.93165 1.20304 1.00151 0.93538 0.97643 1.21233 0.98491 0.98124 0.95456 1.21410 0.99442 0.98882 0.95413 1.21478 0.99567 0.92313 1.00721 1.21464 0.99036 0.99354 0.94998 1.21304 0.98595 0.97315 0.95984 0.86902 0.88862 0.88665 0.89338 0.89313 0.86298 0.86414 0.75324 0.93526 0.93602 0.97386 0.97315 0.92598 0.87562 0.89746 0.86889 0.84834 0.84107 0.84295 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 9.11 71.23 0.65 -1.85 16 2 C 0.51 10.36 7.73 87.66 0.68 11.04 16 3 O -0.58 -16.20 16.45 -3.04 -0.05 -16.25 16 4 N -0.60 -10.35 2.47 -826.16 -2.04 -12.39 16 5 C 0.13 2.14 4.45 86.38 0.38 2.53 16 6 C -0.15 -2.34 5.93 29.85 0.18 -2.16 16 7 C 0.51 13.56 7.83 87.66 0.69 14.25 16 8 O -0.59 -20.26 15.98 -3.02 -0.05 -20.31 16 9 N -0.72 -21.33 5.56 -463.07 -2.57 -23.91 16 10 C 0.14 5.58 5.61 86.38 0.48 6.07 16 11 C 0.02 1.04 5.09 29.85 0.15 1.19 16 12 C -0.55 -29.61 9.11 25.60 0.23 -29.37 16 13 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 14 C 0.01 0.37 5.46 84.66 0.46 0.83 16 15 N -0.93 -53.14 13.29 21.45 0.28 -52.85 16 16 Si 0.96 42.63 29.54 68.60 2.03 44.65 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 C 0.15 2.53 5.53 85.63 0.47 3.00 16 21 C -0.12 -2.17 5.46 -19.87 -0.11 -2.28 16 22 C -0.11 -2.33 9.70 22.27 0.22 -2.12 16 23 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 24 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 25 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 26 C -0.11 -1.95 9.48 22.27 0.21 -1.74 16 27 H 0.11 1.20 7.66 -2.39 -0.02 1.18 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.19 6.10 -2.39 -0.01 1.17 16 30 H 0.09 1.53 6.14 -2.38 -0.01 1.52 16 31 H 0.09 1.56 7.53 -2.39 -0.02 1.54 16 32 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.12 1.41 7.09 -2.38 -0.02 1.39 16 34 H 0.41 10.20 8.47 -92.71 -0.79 9.41 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.11 1.32 8.05 -2.39 -0.02 1.30 16 41 H 0.08 1.61 7.29 -2.39 -0.02 1.59 16 42 H 0.11 2.54 7.85 -2.91 -0.02 2.52 16 43 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 45 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 46 H 0.13 1.92 7.82 -2.91 -0.02 1.89 16 Total: -1.00 -71.19 388.33 3.16 -68.03 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.19 Total: 19.32 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 5.37 Total: -6.29 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -4.33 Total: -89.15 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.10 Total: -36.56 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -71.19 3.16 -68.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342647845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.603 kcal (2) G-P(sol) polarization free energy of solvation -71.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds