Wall clock time and date at job start Tue Mar 31 2020 13:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 119.99806 * 2 1 4 4 C 1.50699 * 109.47284 * 269.99558 * 3 2 1 5 5 H 1.08001 * 119.99894 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99796 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00377 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99733 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47130 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46761 * 120.00251 * 8 6 4 11 11 H 1.48493 * 109.47483 * 240.00205 * 8 6 4 12 12 C 1.34773 * 120.00363 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00280 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99859 * 0.02562 * 12 2 1 15 15 C 1.53005 * 109.47428 * 179.97438 * 14 12 2 16 16 N 1.46895 * 109.47050 * 179.97438 * 15 14 12 17 17 C 1.46906 * 110.99811 * 179.97438 * 16 15 14 18 18 H 1.09006 * 110.72721 * 36.96113 * 17 16 15 19 19 C 1.54347 * 110.82558 * 273.54953 * 17 16 15 20 20 C 1.51380 * 105.16816 * 215.44677 * 19 17 16 21 21 C 1.38540 * 130.36206 * 197.15015 * 20 19 17 22 22 C 1.38129 * 120.33524 * 180.02562 * 21 20 19 23 23 C 1.38161 * 120.00040 * 359.97371 * 22 21 20 24 24 C 1.38597 * 119.86693 * 0.02562 * 23 22 21 25 25 O 1.35900 * 119.95123 * 179.97438 * 24 23 22 26 26 C 1.38127 * 109.75857 * 17.17749 * 20 19 17 27 27 C 1.51360 * 109.78768 * 0.02562 * 26 20 19 28 28 H 1.08998 * 109.47457 * 269.99834 * 1 2 3 29 29 H 1.09002 * 109.47537 * 30.00174 * 1 2 3 30 30 H 1.09002 * 109.47249 * 150.00107 * 1 2 3 31 31 H 1.08996 * 109.47420 * 30.00198 * 3 2 1 32 32 H 1.09005 * 109.46824 * 149.99722 * 3 2 1 33 33 H 0.97003 * 120.00167 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47573 * 59.99583 * 14 12 2 35 35 H 1.09008 * 109.47044 * 299.99702 * 14 12 2 36 36 H 1.09003 * 109.46895 * 60.00136 * 15 14 12 37 37 H 1.09000 * 109.47060 * 300.00207 * 15 14 12 38 38 H 1.00901 * 111.00538 * 56.04962 * 16 15 14 39 39 H 1.08999 * 110.29797 * 334.36928 * 19 17 16 40 40 H 1.08997 * 110.30496 * 96.42573 * 19 17 16 41 41 H 1.07996 * 119.83047 * 0.02640 * 21 20 19 42 42 H 1.08003 * 119.99781 * 179.97438 * 22 21 20 43 43 H 1.07994 * 120.06304 * 180.02562 * 23 22 21 44 44 H 0.96698 * 114.00401 * 270.03015 * 25 24 23 45 45 H 1.09004 * 110.29949 * 223.89279 * 27 26 20 46 46 H 1.08998 * 110.30240 * 101.74229 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6726 7 7 3.5532 3.6182 -0.6731 8 14 3.4368 3.4176 -3.4339 9 1 2.8590 2.4176 -4.3673 10 1 2.7987 4.7381 -3.6668 11 1 4.8992 3.5264 -3.6675 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0001 14 6 1.3854 -2.4722 0.0005 15 6 2.3797 -3.6352 0.0005 16 7 1.6452 -4.9074 0.0011 17 6 2.5697 -6.0490 0.0005 18 1 3.4460 -5.8361 0.6129 19 6 2.9834 -6.4194 -1.4396 20 6 3.1124 -7.9277 -1.4392 21 6 3.7455 -8.7742 -2.3346 22 6 3.7341 -10.1403 -2.1305 23 6 3.0895 -10.6688 -1.0286 24 6 2.4548 -9.8257 -0.1301 25 8 1.8199 -10.3437 0.9540 26 6 2.4661 -8.4513 -0.3364 27 6 1.8575 -7.3317 0.4803 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1498 1.1384 0.5139 33 1 4.0300 4.4441 -0.8503 34 1 0.7590 -2.5303 -0.8896 35 1 0.7584 -2.5298 0.8904 36 1 3.0063 -3.5775 0.8906 37 1 3.0064 -3.5775 -0.8894 38 1 1.0085 -4.9578 -0.7800 39 1 2.2151 -6.1056 -2.1462 40 1 3.9381 -5.9567 -1.6897 41 1 4.2505 -8.3640 -3.1966 42 1 4.2290 -10.7953 -2.8323 43 1 3.0803 -11.7367 -0.8678 44 1 0.8895 -10.5578 0.8000 45 1 2.0447 -7.4932 1.5420 46 1 0.7864 -7.2640 0.2903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429318302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:30 Heat of formation + Delta-G solvation = -55.576222 kcal Electronic energy + Delta-G solvation = -25530.183311 eV Core-core repulsion = 21805.427714 eV Total energy + Delta-G solvation = -3724.755597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.74322 -39.06036 -37.99774 -36.57967 -34.86614 -34.13787 -32.61867 -30.62495 -30.55713 -28.10480 -27.46385 -27.12807 -25.68857 -23.55884 -22.38761 -21.77075 -21.42898 -20.93380 -18.33459 -18.28273 -16.67169 -16.56496 -16.44595 -16.12897 -15.71964 -15.38408 -15.31839 -15.01776 -14.61913 -14.24516 -14.16178 -13.64378 -13.34002 -13.13436 -12.91625 -12.58262 -12.48561 -12.29281 -12.16679 -12.12736 -11.88631 -11.69076 -11.51005 -11.39826 -11.28781 -11.13278 -11.01223 -10.84400 -10.79488 -10.56811 -10.16672 -9.61319 -8.89655 -8.89589 -8.83903 -8.55959 -8.44598 -7.63192 -6.04906 -4.09664 0.92366 0.98533 3.26376 3.28597 3.35637 3.38802 3.46522 3.68939 3.90703 4.08318 4.19775 4.42235 4.48418 4.67392 4.77177 4.86873 4.90394 5.14817 5.16306 5.18616 5.24888 5.29227 5.37975 5.40251 5.50667 5.58930 5.61657 5.65418 5.78664 5.83861 5.87236 5.93801 6.02635 6.09281 6.10551 6.14310 6.22432 6.26842 6.49304 6.88786 7.05955 7.22909 7.33648 7.44946 7.54835 7.91630 8.23242 8.43177 8.90088 9.10538 9.55451 11.03176 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022819 B = 0.002112 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.747806 B =13253.081044 C =14081.093858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.545 6.545 14 C -0.137 4.137 15 C 0.074 3.926 16 N -0.680 5.680 17 C 0.091 3.909 18 H 0.094 0.906 19 C -0.116 4.116 20 C -0.076 4.076 21 C -0.117 4.117 22 C -0.106 4.106 23 C -0.149 4.149 24 C 0.116 3.884 25 O -0.498 6.498 26 C -0.119 4.119 27 C -0.066 4.066 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.340 0.660 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.388 0.612 45 H 0.081 0.919 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 -26.927 -0.586 27.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.423 6.423 14 C -0.178 4.178 15 C -0.055 4.055 16 N -0.310 5.310 17 C -0.019 4.019 18 H 0.112 0.888 19 C -0.154 4.154 20 C -0.076 4.076 21 C -0.135 4.135 22 C -0.124 4.124 23 C -0.167 4.167 24 C 0.071 3.929 25 O -0.308 6.308 26 C -0.120 4.120 27 C -0.103 4.103 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.159 0.841 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.244 0.756 45 H 0.099 0.901 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.149 -26.628 0.434 27.332 hybrid contribution -0.025 0.317 -2.215 2.238 sum -6.173 -26.311 -1.781 27.084 Atomic orbital electron populations 1.21632 0.81431 1.02517 1.00437 1.48160 1.06198 1.07896 1.71309 1.19291 0.92589 0.78188 0.97476 1.21462 1.36384 1.06189 0.92317 0.92494 1.24951 0.95420 0.96429 0.97441 1.69942 1.38442 1.14335 1.30644 0.86442 0.78082 0.78298 0.84583 1.19858 1.20952 1.20866 1.20273 0.88067 0.85160 0.77460 1.90667 1.13992 1.87356 1.50330 1.21614 0.99279 0.92932 1.03938 1.21701 0.94950 0.86503 1.02356 1.60527 1.19220 1.01450 1.49788 1.22249 0.95184 0.90274 0.94229 0.88770 1.21933 1.03068 0.91230 0.99203 1.20449 0.96946 0.95726 0.94498 1.20711 1.00202 0.93013 0.99554 1.20913 0.99228 0.94878 0.97351 1.21305 1.00868 0.99974 0.94555 1.18068 0.97652 0.89449 0.87705 1.84818 1.28129 1.84027 1.33836 1.20953 1.00357 0.93544 0.97176 1.20937 1.00013 0.89950 0.99427 0.93719 0.90882 0.92409 0.95029 0.93846 0.92767 0.89757 0.88800 0.90045 0.94003 0.84148 0.89852 0.90173 0.85924 0.85447 0.85342 0.75627 0.90065 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.84 0.61 1.92 16 2 N -0.60 -12.78 2.86 -182.96 -0.52 -13.30 16 3 C 0.24 6.43 5.16 -5.19 -0.03 6.40 16 4 C -0.52 -14.95 9.39 -34.44 -0.32 -15.28 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 C 0.50 10.31 7.67 -10.99 -0.08 10.23 16 13 O -0.55 -13.59 15.56 5.56 0.09 -13.51 16 14 C -0.14 -1.93 4.51 -27.88 -0.13 -2.05 16 15 C 0.07 0.99 4.83 -3.82 -0.02 0.97 16 16 N -0.68 -7.05 6.32 -105.22 -0.66 -7.71 16 17 C 0.09 0.91 3.36 -66.29 -0.22 0.68 16 18 H 0.09 1.03 7.90 -51.93 -0.41 0.62 16 19 C -0.12 -1.09 6.40 -26.84 -0.17 -1.26 16 20 C -0.08 -0.74 6.14 -104.22 -0.64 -1.38 16 21 C -0.12 -1.03 10.04 -39.51 -0.40 -1.43 16 22 C -0.11 -0.84 10.04 -39.65 -0.40 -1.24 16 23 C -0.15 -1.24 9.98 -39.48 -0.39 -1.64 16 24 C 0.12 1.09 6.70 -39.17 -0.26 0.83 16 25 O -0.50 -4.18 13.45 -19.42 -0.26 -4.44 16 26 C -0.12 -1.18 6.11 -104.06 -0.64 -1.81 16 27 C -0.07 -0.61 6.43 -26.85 -0.17 -0.78 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 30 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.08 1.03 7.40 -51.93 -0.38 0.64 16 35 H 0.09 1.17 8.11 -51.92 -0.42 0.75 16 36 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 37 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 38 H 0.34 3.05 8.20 -39.29 -0.32 2.73 16 39 H 0.08 0.73 7.64 -51.93 -0.40 0.33 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.39 1.43 9.06 45.56 0.41 1.84 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -34.84 382.04 -9.67 -44.50 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.42 Total: 2.03 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -3.36 Total: -4.21 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.45 Total: -47.01 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.17 Total: -17.95 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.84 -9.67 -44.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429318302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.074 kcal (2) G-P(sol) polarization free energy of solvation -34.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds