Wall clock time and date at job start Tue Mar 31 2020 13:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 119.99806 * 2 1 4 4 C 1.50699 * 109.47284 * 269.99558 * 3 2 1 5 5 H 1.08001 * 119.99894 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99796 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00377 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99733 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47130 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46761 * 120.00251 * 8 6 4 11 11 H 1.48493 * 109.47483 * 240.00205 * 8 6 4 12 12 C 1.34773 * 120.00363 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00280 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99859 * 0.02562 * 12 2 1 15 15 C 1.53005 * 109.47428 * 179.97438 * 14 12 2 16 16 N 1.46895 * 109.47050 * 179.97438 * 15 14 12 17 17 C 1.46906 * 110.99811 * 179.97438 * 16 15 14 18 18 H 1.09006 * 110.72721 * 36.96113 * 17 16 15 19 19 C 1.54347 * 110.82558 * 273.54953 * 17 16 15 20 20 C 1.51380 * 105.16816 * 215.44677 * 19 17 16 21 21 C 1.38540 * 130.36206 * 197.15015 * 20 19 17 22 22 C 1.38129 * 120.33524 * 180.02562 * 21 20 19 23 23 C 1.38161 * 120.00040 * 359.97371 * 22 21 20 24 24 C 1.38597 * 119.86693 * 0.02562 * 23 22 21 25 25 O 1.35900 * 119.95123 * 179.97438 * 24 23 22 26 26 C 1.38127 * 109.75857 * 17.17749 * 20 19 17 27 27 C 1.51360 * 109.78768 * 0.02562 * 26 20 19 28 28 H 1.08998 * 109.47457 * 269.99834 * 1 2 3 29 29 H 1.09002 * 109.47537 * 30.00174 * 1 2 3 30 30 H 1.09002 * 109.47249 * 150.00107 * 1 2 3 31 31 H 1.08996 * 109.47420 * 30.00198 * 3 2 1 32 32 H 1.09005 * 109.46824 * 149.99722 * 3 2 1 33 33 H 0.97003 * 120.00167 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47573 * 59.99583 * 14 12 2 35 35 H 1.09008 * 109.47044 * 299.99702 * 14 12 2 36 36 H 1.09003 * 109.46895 * 60.00136 * 15 14 12 37 37 H 1.09000 * 109.47060 * 300.00207 * 15 14 12 38 38 H 1.00901 * 111.00538 * 56.04962 * 16 15 14 39 39 H 1.08999 * 110.29797 * 334.36928 * 19 17 16 40 40 H 1.08997 * 110.30496 * 96.42573 * 19 17 16 41 41 H 1.07996 * 119.83047 * 0.02640 * 21 20 19 42 42 H 1.08003 * 119.99781 * 179.97438 * 22 21 20 43 43 H 1.07994 * 120.06304 * 180.02562 * 23 22 21 44 44 H 0.96698 * 114.00401 * 270.03015 * 25 24 23 45 45 H 1.09004 * 110.29949 * 223.89279 * 27 26 20 46 46 H 1.08998 * 110.30240 * 101.74229 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6726 7 7 3.5532 3.6182 -0.6731 8 14 3.4368 3.4176 -3.4339 9 1 2.8590 2.4176 -4.3673 10 1 2.7987 4.7381 -3.6668 11 1 4.8992 3.5264 -3.6675 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0001 14 6 1.3854 -2.4722 0.0005 15 6 2.3797 -3.6352 0.0005 16 7 1.6452 -4.9074 0.0011 17 6 2.5697 -6.0490 0.0005 18 1 3.4460 -5.8361 0.6129 19 6 2.9834 -6.4194 -1.4396 20 6 3.1124 -7.9277 -1.4392 21 6 3.7455 -8.7742 -2.3346 22 6 3.7341 -10.1403 -2.1305 23 6 3.0895 -10.6688 -1.0286 24 6 2.4548 -9.8257 -0.1301 25 8 1.8199 -10.3437 0.9540 26 6 2.4661 -8.4513 -0.3364 27 6 1.8575 -7.3317 0.4803 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1498 1.1384 0.5139 33 1 4.0300 4.4441 -0.8503 34 1 0.7590 -2.5303 -0.8896 35 1 0.7584 -2.5298 0.8904 36 1 3.0063 -3.5775 0.8906 37 1 3.0064 -3.5775 -0.8894 38 1 1.0085 -4.9578 -0.7800 39 1 2.2151 -6.1056 -2.1462 40 1 3.9381 -5.9567 -1.6897 41 1 4.2505 -8.3640 -3.1966 42 1 4.2290 -10.7953 -2.8323 43 1 3.0803 -11.7367 -0.8678 44 1 0.8895 -10.5578 0.8000 45 1 2.0447 -7.4932 1.5420 46 1 0.7864 -7.2640 0.2903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429318302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:29 Heat of formation + Delta-G solvation = -80.552674 kcal Electronic energy + Delta-G solvation = -25531.266371 eV Core-core repulsion = 21805.427714 eV Total energy + Delta-G solvation = -3725.838657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42658 -40.64714 -38.75794 -37.32831 -36.58199 -35.12090 -34.67913 -31.71801 -31.27847 -29.73907 -28.21423 -28.14970 -27.21559 -25.25716 -23.32766 -22.97529 -22.10958 -21.72045 -19.86985 -18.93600 -18.70682 -17.93200 -17.34701 -17.05689 -16.87490 -16.72999 -16.36987 -16.13583 -15.87605 -15.63416 -14.96293 -14.76901 -14.44461 -14.22253 -13.90332 -13.82577 -13.72021 -13.45768 -13.43747 -13.20240 -13.10643 -13.01774 -12.79214 -12.77080 -12.56387 -12.21913 -12.18647 -12.17333 -12.05344 -11.99415 -11.67507 -11.43618 -10.66141 -10.59257 -9.55810 -9.49903 -9.46304 -9.39434 -8.23215 -6.38337 0.28173 0.33151 1.35512 1.37886 1.49698 1.86828 2.29656 2.42949 2.63826 3.05266 3.07192 3.32712 3.43451 3.66437 3.84648 4.02681 4.05150 4.12448 4.17782 4.21176 4.26820 4.44835 4.53050 4.57110 4.68016 4.70697 4.75174 4.77371 4.88292 4.91345 4.97119 4.99186 5.04006 5.07202 5.11124 5.18203 5.23789 5.40668 5.47052 5.56247 5.59690 5.84747 5.89765 5.94969 6.05531 6.44045 6.69630 6.81351 6.86972 7.27806 7.50466 8.83990 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022819 B = 0.002112 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.747806 B =13253.081044 C =14081.093858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.257 3.743 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.004 3.996 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.493 3.507 13 O -0.603 6.603 14 C -0.117 4.117 15 C 0.083 3.917 16 N -0.667 5.667 17 C 0.091 3.909 18 H 0.078 0.922 19 C -0.111 4.111 20 C -0.090 4.090 21 C -0.129 4.129 22 C -0.104 4.104 23 C -0.155 4.155 24 C 0.107 3.893 25 O -0.510 6.510 26 C -0.136 4.136 27 C -0.056 4.056 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.022 0.978 32 H -0.004 1.004 33 H 0.267 0.733 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.060 0.940 37 H 0.024 0.976 38 H 0.353 0.647 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.134 0.866 42 H 0.152 0.848 43 H 0.146 0.854 44 H 0.407 0.593 45 H 0.074 0.926 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.269 -28.750 -2.082 30.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.135 3.865 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.195 4.195 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.194 1.194 11 H -0.208 1.208 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.157 4.157 15 C -0.046 4.046 16 N -0.298 5.298 17 C -0.020 4.020 18 H 0.096 0.904 19 C -0.150 4.150 20 C -0.091 4.091 21 C -0.147 4.147 22 C -0.122 4.122 23 C -0.173 4.173 24 C 0.063 3.937 25 O -0.322 6.322 26 C -0.137 4.137 27 C -0.094 4.094 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.041 0.959 32 H 0.014 0.986 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.173 0.827 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.152 0.848 42 H 0.170 0.830 43 H 0.164 0.836 44 H 0.266 0.734 45 H 0.092 0.908 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.164 -28.480 -1.060 29.646 hybrid contribution 0.572 0.817 -1.686 1.959 sum -7.592 -27.663 -2.746 28.817 Atomic orbital electron populations 1.21946 0.77709 1.04108 1.02613 1.48209 1.08528 1.06395 1.71208 1.18755 0.91078 0.80619 0.96038 1.21727 1.36678 1.06454 0.93016 0.92786 1.25909 0.94982 0.96496 1.02106 1.70062 1.39002 1.14836 1.33038 0.85336 0.77840 0.78435 0.78995 1.18981 1.19378 1.20823 1.21430 0.87811 0.86815 0.75766 1.90636 1.16847 1.88298 1.52694 1.21537 0.98862 0.88736 1.06594 1.21470 0.94692 0.87866 1.00596 1.60463 1.18838 1.00088 1.50422 1.22198 0.94807 0.90433 0.94538 0.90356 1.21859 1.02865 0.91376 0.98852 1.20566 0.97663 0.95790 0.95055 1.20961 1.00289 0.93549 0.99887 1.21234 0.98606 0.94852 0.97537 1.21576 1.00456 1.00858 0.94408 1.18239 0.97967 0.89501 0.88015 1.84764 1.29758 1.83930 1.33797 1.21066 1.01121 0.94009 0.97518 1.20822 1.00452 0.89234 0.98846 0.91198 0.91763 0.88360 0.95950 0.98617 0.92412 0.86602 0.86076 0.92161 0.95809 0.82694 0.88919 0.91125 0.84822 0.83013 0.83637 0.73402 0.90779 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.25 10.24 127.77 1.31 3.56 16 2 N -0.61 -25.88 2.86 -851.15 -2.43 -28.31 16 3 C 0.26 14.06 5.16 85.63 0.44 14.50 16 4 C -0.54 -31.40 9.39 25.60 0.24 -31.16 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.00 0.22 5.46 84.65 0.46 0.68 16 7 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 8 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 C 0.49 20.18 7.67 87.66 0.67 20.85 16 13 O -0.60 -31.36 15.56 -3.03 -0.05 -31.41 16 14 C -0.12 -3.03 4.51 29.85 0.13 -2.89 16 15 C 0.08 2.17 4.83 86.31 0.42 2.59 16 16 N -0.67 -12.67 6.32 -486.82 -3.08 -15.75 16 17 C 0.09 1.76 3.36 45.83 0.15 1.91 16 18 H 0.08 1.76 7.90 -2.38 -0.02 1.74 16 19 C -0.11 -2.02 6.40 30.52 0.20 -1.83 16 20 C -0.09 -1.69 6.14 -19.60 -0.12 -1.81 16 21 C -0.13 -2.12 10.04 22.32 0.22 -1.89 16 22 C -0.10 -1.46 10.04 22.23 0.22 -1.23 16 23 C -0.15 -2.31 9.98 22.34 0.22 -2.09 16 24 C 0.11 1.88 6.70 22.54 0.15 2.03 16 25 O -0.51 -7.83 13.45 -92.42 -1.24 -9.08 16 26 C -0.14 -2.56 6.11 -19.50 -0.12 -2.68 16 27 C -0.06 -0.98 6.43 30.52 0.20 -0.78 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 30 H 0.10 2.03 6.44 -2.39 -0.02 2.02 16 31 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 32 H 0.00 -0.27 7.42 -2.38 -0.02 -0.29 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.12 2.33 7.40 -2.39 -0.02 2.31 16 35 H 0.12 2.56 8.11 -2.38 -0.02 2.54 16 36 H 0.06 1.83 8.05 -2.39 -0.02 1.81 16 37 H 0.02 0.70 8.09 -2.39 -0.02 0.68 16 38 H 0.35 5.31 8.20 -89.69 -0.74 4.58 16 39 H 0.09 1.48 7.64 -2.39 -0.02 1.47 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 43 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 44 H 0.41 2.33 9.06 -74.06 -0.67 1.66 16 45 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.10 1.45 8.08 -2.39 -0.02 1.43 16 Total: -1.00 -79.08 382.04 -0.09 -79.17 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -0.41 Total: 15.04 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 4.80 Total: -0.23 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -5.22 Total: -100.64 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -1.29 Total: -40.48 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -79.08 -0.09 -79.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429318302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.381 kcal (2) G-P(sol) polarization free energy of solvation -79.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds