Wall clock time and date at job start Tue Mar 31 2020 12:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47087 * 2 1 4 4 C 1.42896 * 113.99664 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.02056 * 29.94037 * 4 3 2 6 6 C 1.53875 * 110.03551 * 268.54565 * 4 3 2 7 7 C 1.54269 * 106.59764 * 240.66850 * 6 4 3 8 8 C 1.54883 * 104.19858 * 336.39026 * 7 6 4 9 9 C 1.54476 * 110.16179 * 151.19517 * 4 3 2 10 10 H 1.08998 * 110.39920 * 24.16105 * 9 4 3 11 11 N 1.46507 * 110.66031 * 261.46110 * 9 4 3 12 12 C 1.34774 * 119.99954 * 158.78396 * 11 9 4 13 13 O 1.21582 * 119.99559 * 359.97438 * 12 11 9 14 14 N 1.34775 * 119.99924 * 179.97438 * 12 11 9 15 15 C 1.39245 * 119.99756 * 175.70945 * 14 12 11 16 16 C 1.39478 * 119.82920 * 215.02138 * 15 14 12 17 17 C 1.36374 * 120.16381 * 179.76414 * 16 15 14 18 18 C 1.40873 * 119.83041 * 0.53263 * 17 16 15 19 19 C 1.41157 * 120.16429 * 179.69902 * 18 17 16 20 20 H 1.08001 * 119.99924 * 214.80275 * 19 18 17 21 21 C 1.39892 * 120.00212 * 34.80863 * 19 18 17 22 22 N 1.30882 * 119.99698 * 355.55040 * 21 19 18 23 23 Si 1.86795 * 120.00180 * 175.55707 * 21 19 18 24 24 H 1.48506 * 109.47058 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47292 * 119.99579 * 23 21 19 26 26 H 1.48500 * 109.47371 * 239.99910 * 23 21 19 27 27 C 1.40868 * 119.66871 * 359.71922 * 18 17 16 28 28 C 1.36374 * 119.82942 * 0.02562 * 27 18 17 29 29 H 1.09000 * 109.47266 * 60.00012 * 1 2 3 30 30 H 1.09005 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47530 * 299.99898 * 1 2 3 32 32 H 1.08999 * 109.46999 * 239.99579 * 2 1 3 33 33 H 1.08999 * 109.46768 * 119.99819 * 2 1 3 34 34 H 1.08995 * 110.03266 * 121.38360 * 6 4 3 35 35 H 1.09000 * 110.07141 * 359.97097 * 6 4 3 36 36 H 1.08998 * 110.48746 * 217.70560 * 7 6 4 37 37 H 1.09003 * 110.59929 * 95.11995 * 7 6 4 38 38 H 1.09002 * 110.76250 * 156.25688 * 8 7 6 39 39 H 1.09006 * 110.75472 * 279.44237 * 8 7 6 40 40 H 0.96996 * 119.99859 * 338.78507 * 11 9 4 41 41 H 0.96998 * 119.99586 * 355.71170 * 14 12 11 42 42 H 1.07995 * 119.91798 * 359.97438 * 16 15 14 43 43 H 1.08001 * 120.08835 * 180.25214 * 17 16 15 44 44 H 0.96999 * 119.99912 * 180.02562 * 22 21 19 45 45 H 1.08009 * 120.08391 * 179.97438 * 27 18 17 46 46 H 1.07998 * 119.91118 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 0.0006 5 1 3.8730 0.6048 -0.5102 6 6 3.9528 1.5384 1.4459 7 6 4.6795 2.8927 1.5792 8 6 5.0793 3.2538 0.1270 9 6 3.8616 2.7687 -0.6981 10 1 3.0571 3.5030 -0.6588 11 7 4.2531 2.5090 -2.0858 12 6 4.2494 3.5121 -2.9860 13 8 3.9208 4.6323 -2.6464 14 7 4.6101 3.2734 -4.2624 15 6 4.5211 4.2876 -5.2123 16 6 4.1694 3.9787 -6.5262 17 6 4.0755 4.9672 -7.4610 18 6 4.3457 6.3016 -7.0992 19 6 4.2568 7.3296 -8.0625 20 1 4.9359 8.1684 -8.0214 21 6 3.2891 7.2619 -9.0705 22 7 2.5239 6.2051 -9.1730 23 14 3.0892 8.6797 -10.2701 24 1 4.0677 9.7475 -9.9419 25 1 3.3296 8.1955 -11.6533 26 1 1.7111 9.2236 -10.1685 27 6 4.7053 6.6050 -5.7714 28 6 4.7900 5.6064 -4.8465 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 4.6483 0.7211 1.6366 35 1 3.1200 1.4910 2.1476 36 1 5.5662 2.7899 2.2047 37 1 4.0099 3.6485 1.9896 38 1 5.2145 4.3301 0.0197 39 1 5.9832 2.7211 -0.1686 40 1 4.5149 1.6152 -2.3567 41 1 4.9316 2.3950 -4.5193 42 1 3.9678 2.9545 -6.8033 43 1 3.7992 4.7272 -8.4771 44 1 1.8531 6.1579 -9.8721 45 1 4.9143 7.6257 -5.4868 46 1 5.0661 5.8374 -3.8283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454350764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:24 Heat of formation + Delta-G solvation = -62.649754 kcal Electronic energy + Delta-G solvation = -26137.213982 eV Core-core repulsion = 22412.151653 eV Total energy + Delta-G solvation = -3725.062328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.20326 -39.07775 -37.38871 -36.38867 -34.32827 -33.60399 -32.67380 -31.42927 -29.52855 -28.91188 -27.96228 -27.20369 -24.70396 -23.12956 -21.86420 -21.03338 -20.80780 -20.52132 -20.00244 -18.11781 -17.24005 -16.97521 -16.84583 -15.91662 -15.50851 -15.15425 -15.07368 -14.88900 -14.22074 -13.82484 -13.70521 -13.53654 -13.11717 -13.08563 -12.91258 -12.64545 -12.25836 -12.10749 -11.99295 -11.66398 -11.60241 -11.46294 -11.33872 -11.29208 -11.11612 -10.93669 -10.84112 -10.73713 -10.66403 -10.02630 -9.84206 -9.46864 -9.39532 -9.17260 -8.88645 -8.78774 -7.47340 -6.76656 -6.55210 -4.27268 2.71308 2.95900 3.13167 3.14247 3.19151 3.21617 3.45792 3.74720 4.03358 4.25268 4.41908 4.63973 4.71827 4.77388 4.78417 4.90449 4.99294 5.08351 5.21991 5.27611 5.30467 5.39707 5.47132 5.64610 5.66945 5.71356 5.79367 5.79838 5.90720 6.04905 6.12089 6.25414 6.50869 6.64390 6.83253 6.88905 7.03193 7.11368 7.21934 7.33541 7.47069 7.72029 7.93073 8.03835 8.16424 8.37701 8.53173 8.70808 8.99657 9.00082 9.16362 10.36132 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.002460 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.442270 B =11378.437376 C =12087.657936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.375 6.375 4 C 0.080 3.920 5 H 0.066 0.934 6 C -0.143 4.143 7 C -0.120 4.120 8 C -0.134 4.134 9 C 0.166 3.834 10 H 0.104 0.896 11 N -0.746 5.746 12 C 0.697 3.303 13 O -0.575 6.575 14 N -0.668 5.668 15 C 0.025 3.975 16 C -0.124 4.124 17 C -0.140 4.140 18 C 0.097 3.903 19 C -0.461 4.461 20 H 0.075 0.925 21 C 0.069 3.931 22 N -0.814 5.814 23 Si 0.914 3.086 24 H -0.263 1.263 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.204 4.204 28 C -0.087 4.087 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.389 0.611 41 H 0.391 0.609 42 H 0.090 0.910 43 H 0.132 0.868 44 H 0.276 0.724 45 H 0.095 0.905 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 -14.582 16.809 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.295 6.295 4 C 0.021 3.979 5 H 0.084 0.916 6 C -0.181 4.181 7 C -0.158 4.158 8 C -0.173 4.173 9 C 0.060 3.940 10 H 0.122 0.878 11 N -0.401 5.401 12 C 0.398 3.602 13 O -0.451 6.451 14 N -0.314 5.314 15 C -0.067 4.067 16 C -0.145 4.145 17 C -0.160 4.160 18 C 0.094 3.906 19 C -0.493 4.493 20 H 0.093 0.907 21 C -0.146 4.146 22 N -0.442 5.442 23 Si 0.739 3.261 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.224 4.224 28 C -0.107 4.107 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.223 0.777 41 H 0.224 0.776 42 H 0.108 0.892 43 H 0.149 0.851 44 H 0.087 0.913 45 H 0.113 0.887 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.072 -13.469 16.974 21.695 hybrid contribution 0.107 -0.656 -0.797 1.038 sum 1.178 -14.125 16.177 21.508 Atomic orbital electron populations 1.21748 0.93704 1.02148 1.03377 1.22497 0.95744 0.83929 0.99781 1.88016 1.20294 1.26225 1.94921 1.23009 0.81614 0.97692 0.95562 0.91630 1.22606 1.00616 0.98483 0.96422 1.22257 1.00137 0.96574 0.96828 1.22870 0.97651 1.02559 0.94214 1.21606 0.97181 0.95986 0.79218 0.87757 1.45116 1.74537 1.11176 1.09304 1.15985 0.78676 0.84634 0.80914 1.90907 1.54361 1.21130 1.78704 1.42115 1.67901 1.14386 1.06988 1.17075 1.13874 0.87633 0.88156 1.20288 1.03332 0.98211 0.92628 1.21172 1.03727 0.91784 0.99362 1.17720 0.89141 0.92564 0.91129 1.19508 1.14879 1.06147 1.08728 0.90653 1.25863 0.94877 0.96733 0.97088 1.69779 1.17161 1.27241 1.29988 0.86165 0.78885 0.81360 0.79641 1.18634 1.20078 1.20051 1.20813 1.11070 0.97121 0.93374 1.20419 0.99959 0.91629 0.98661 0.91624 0.91209 0.91853 0.93469 0.93557 0.91240 0.90468 0.91292 0.91004 0.90198 0.91108 0.77736 0.77649 0.89225 0.85069 0.91318 0.88653 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.15 0.38 -0.82 16 2 C 0.06 0.49 6.50 37.15 0.24 0.73 16 3 O -0.38 -4.29 9.91 -35.23 -0.35 -4.64 16 4 C 0.08 0.77 3.11 -25.50 -0.08 0.69 16 5 H 0.07 0.53 7.39 -51.93 -0.38 0.14 16 6 C -0.14 -1.13 6.60 -25.61 -0.17 -1.30 16 7 C -0.12 -1.01 6.83 -25.07 -0.17 -1.19 16 8 C -0.13 -1.44 6.56 -24.74 -0.16 -1.60 16 9 C 0.17 2.06 2.90 -66.16 -0.19 1.87 16 10 H 0.10 1.64 7.61 -51.93 -0.40 1.25 16 11 N -0.75 -9.79 5.19 -56.94 -0.30 -10.09 16 12 C 0.70 12.75 8.39 -86.92 -0.73 12.02 16 13 O -0.57 -13.05 13.47 5.29 0.07 -12.98 16 14 N -0.67 -12.08 5.31 -14.10 -0.07 -12.16 16 15 C 0.03 0.58 6.31 -83.57 -0.53 0.05 16 16 C -0.12 -2.89 9.90 -39.79 -0.39 -3.29 16 17 C -0.14 -3.68 8.62 -39.26 -0.34 -4.02 16 18 C 0.10 2.66 5.55 -106.80 -0.59 2.06 16 19 C -0.46 -12.57 9.02 -37.86 -0.34 -12.91 16 20 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 21 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 22 N -0.81 -21.62 10.60 55.54 0.59 -21.03 16 23 Si 0.91 19.42 29.56 -169.99 -5.03 14.39 16 24 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 27 C -0.20 -5.30 9.74 -39.26 -0.38 -5.68 16 28 C -0.09 -2.14 8.61 -39.79 -0.34 -2.48 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.37 8.10 -51.93 -0.42 -0.05 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.62 7.96 -51.93 -0.41 0.21 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.39 3.82 8.35 -40.82 -0.34 3.48 16 41 H 0.39 5.48 8.83 -40.82 -0.36 5.12 16 42 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.13 3.54 6.13 -52.49 -0.32 3.22 16 44 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 45 H 0.10 2.36 8.06 -52.48 -0.42 1.93 16 46 H 0.11 2.67 6.22 -52.49 -0.33 2.34 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -32.09 375.83 -10.47 -42.56 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -7.16 Total: 12.46 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -3.89 Total: -14.18 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.22 Total: -43.28 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.28 Total: -17.62 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.09 -10.47 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454350764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.086 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds