Wall clock time and date at job start Tue Mar 31 2020 12:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47087 * 2 1 4 4 C 1.42896 * 113.99664 * 179.97438 * 3 2 1 5 5 H 1.08996 * 110.02056 * 29.94037 * 4 3 2 6 6 C 1.53875 * 110.03551 * 268.54565 * 4 3 2 7 7 C 1.54269 * 106.59764 * 240.66850 * 6 4 3 8 8 C 1.54883 * 104.19858 * 336.39026 * 7 6 4 9 9 C 1.54476 * 110.16179 * 151.19517 * 4 3 2 10 10 H 1.08998 * 110.39920 * 24.16105 * 9 4 3 11 11 N 1.46507 * 110.66031 * 261.46110 * 9 4 3 12 12 C 1.34774 * 119.99954 * 158.78396 * 11 9 4 13 13 O 1.21582 * 119.99559 * 359.97438 * 12 11 9 14 14 N 1.34775 * 119.99924 * 179.97438 * 12 11 9 15 15 C 1.39245 * 119.99756 * 175.70945 * 14 12 11 16 16 C 1.39478 * 119.82920 * 215.02138 * 15 14 12 17 17 C 1.36374 * 120.16381 * 179.76414 * 16 15 14 18 18 C 1.40873 * 119.83041 * 0.53263 * 17 16 15 19 19 C 1.41157 * 120.16429 * 179.69902 * 18 17 16 20 20 H 1.08001 * 119.99924 * 214.80275 * 19 18 17 21 21 C 1.39892 * 120.00212 * 34.80863 * 19 18 17 22 22 N 1.30882 * 119.99698 * 355.55040 * 21 19 18 23 23 Si 1.86795 * 120.00180 * 175.55707 * 21 19 18 24 24 H 1.48506 * 109.47058 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47292 * 119.99579 * 23 21 19 26 26 H 1.48500 * 109.47371 * 239.99910 * 23 21 19 27 27 C 1.40868 * 119.66871 * 359.71922 * 18 17 16 28 28 C 1.36374 * 119.82942 * 0.02562 * 27 18 17 29 29 H 1.09000 * 109.47266 * 60.00012 * 1 2 3 30 30 H 1.09005 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47530 * 299.99898 * 1 2 3 32 32 H 1.08999 * 109.46999 * 239.99579 * 2 1 3 33 33 H 1.08999 * 109.46768 * 119.99819 * 2 1 3 34 34 H 1.08995 * 110.03266 * 121.38360 * 6 4 3 35 35 H 1.09000 * 110.07141 * 359.97097 * 6 4 3 36 36 H 1.08998 * 110.48746 * 217.70560 * 7 6 4 37 37 H 1.09003 * 110.59929 * 95.11995 * 7 6 4 38 38 H 1.09002 * 110.76250 * 156.25688 * 8 7 6 39 39 H 1.09006 * 110.75472 * 279.44237 * 8 7 6 40 40 H 0.96996 * 119.99859 * 338.78507 * 11 9 4 41 41 H 0.96998 * 119.99586 * 355.71170 * 14 12 11 42 42 H 1.07995 * 119.91798 * 359.97438 * 16 15 14 43 43 H 1.08001 * 120.08835 * 180.25214 * 17 16 15 44 44 H 0.96999 * 119.99912 * 180.02562 * 22 21 19 45 45 H 1.08009 * 120.08391 * 179.97438 * 27 18 17 46 46 H 1.07998 * 119.91118 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 0.0006 5 1 3.8730 0.6048 -0.5102 6 6 3.9528 1.5384 1.4459 7 6 4.6795 2.8927 1.5792 8 6 5.0793 3.2538 0.1270 9 6 3.8616 2.7687 -0.6981 10 1 3.0571 3.5030 -0.6588 11 7 4.2531 2.5090 -2.0858 12 6 4.2494 3.5121 -2.9860 13 8 3.9208 4.6323 -2.6464 14 7 4.6101 3.2734 -4.2624 15 6 4.5211 4.2876 -5.2123 16 6 4.1694 3.9787 -6.5262 17 6 4.0755 4.9672 -7.4610 18 6 4.3457 6.3016 -7.0992 19 6 4.2568 7.3296 -8.0625 20 1 4.9359 8.1684 -8.0214 21 6 3.2891 7.2619 -9.0705 22 7 2.5239 6.2051 -9.1730 23 14 3.0892 8.6797 -10.2701 24 1 4.0677 9.7475 -9.9419 25 1 3.3296 8.1955 -11.6533 26 1 1.7111 9.2236 -10.1685 27 6 4.7053 6.6050 -5.7714 28 6 4.7900 5.6064 -4.8465 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 4.6483 0.7211 1.6366 35 1 3.1200 1.4910 2.1476 36 1 5.5662 2.7899 2.2047 37 1 4.0099 3.6485 1.9896 38 1 5.2145 4.3301 0.0197 39 1 5.9832 2.7211 -0.1686 40 1 4.5149 1.6152 -2.3567 41 1 4.9316 2.3950 -4.5193 42 1 3.9678 2.9545 -6.8033 43 1 3.7992 4.7272 -8.4771 44 1 1.8531 6.1579 -9.8721 45 1 4.9143 7.6257 -5.4868 46 1 5.0661 5.8374 -3.8283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454350764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:23 Heat of formation + Delta-G solvation = -82.812506 kcal Electronic energy + Delta-G solvation = -26138.088304 eV Core-core repulsion = 22412.151653 eV Total energy + Delta-G solvation = -3725.936651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.55968 -40.17081 -39.08249 -37.34038 -36.09493 -35.00688 -34.31369 -32.08126 -31.46930 -30.73489 -28.82651 -28.24580 -26.51712 -23.79003 -23.53075 -22.78741 -21.87322 -21.62707 -21.33837 -19.54573 -19.14841 -18.31025 -17.82552 -17.16227 -16.80928 -16.42295 -16.31137 -16.03486 -15.70471 -15.49237 -14.89056 -14.65941 -14.51970 -14.32446 -13.99135 -13.77581 -13.74337 -13.56392 -13.24139 -13.02884 -12.94620 -12.81329 -12.70302 -12.47357 -12.31691 -12.10355 -12.08402 -11.81109 -11.70918 -11.40597 -11.37772 -11.24419 -11.02826 -10.65306 -10.57714 -10.02144 -9.44865 -8.67592 -8.48444 -6.30764 0.85640 1.15966 1.39965 1.47145 1.55369 1.69599 2.20441 2.26058 2.69960 2.82940 3.32168 3.48391 3.70106 3.72890 3.94949 4.17715 4.22823 4.27974 4.39868 4.44589 4.47561 4.50819 4.52976 4.55968 4.64768 4.82123 4.93232 4.99548 5.01168 5.02697 5.13397 5.15280 5.16555 5.21025 5.26340 5.33218 5.35976 5.45758 5.54604 5.70834 5.83356 6.04926 6.13072 6.26332 6.33533 6.41622 6.70232 6.98826 7.02895 7.15818 7.66193 8.44558 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.002460 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.442270 B =11378.437376 C =12087.657936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.406 6.406 4 C 0.084 3.916 5 H 0.091 0.909 6 C -0.135 4.135 7 C -0.115 4.115 8 C -0.130 4.130 9 C 0.158 3.842 10 H 0.063 0.937 11 N -0.721 5.721 12 C 0.695 3.305 13 O -0.623 6.623 14 N -0.658 5.658 15 C 0.042 3.958 16 C -0.120 4.120 17 C -0.157 4.157 18 C 0.065 3.935 19 C -0.498 4.498 20 H 0.071 0.929 21 C 0.026 3.974 22 N -0.843 5.843 23 Si 0.989 3.011 24 H -0.261 1.261 25 H -0.262 1.262 26 H -0.270 1.270 27 C -0.220 4.220 28 C -0.098 4.098 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.411 0.589 41 H 0.414 0.586 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.284 0.716 45 H 0.095 0.905 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 -17.162 17.700 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 O -0.326 6.326 4 C 0.026 3.974 5 H 0.109 0.891 6 C -0.173 4.173 7 C -0.153 4.153 8 C -0.169 4.169 9 C 0.052 3.948 10 H 0.081 0.919 11 N -0.377 5.377 12 C 0.395 3.605 13 O -0.503 6.503 14 N -0.306 5.306 15 C -0.052 4.052 16 C -0.141 4.141 17 C -0.178 4.178 18 C 0.063 3.937 19 C -0.529 4.529 20 H 0.090 0.910 21 C -0.185 4.185 22 N -0.471 5.471 23 Si 0.810 3.190 24 H -0.184 1.184 25 H -0.186 1.186 26 H -0.195 1.195 27 C -0.240 4.240 28 C -0.118 4.118 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.248 0.752 41 H 0.251 0.749 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.094 0.906 45 H 0.113 0.887 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.512 -16.144 17.901 24.153 hybrid contribution -0.037 0.032 -0.930 0.931 sum 1.475 -16.112 16.971 23.448 Atomic orbital electron populations 1.21785 0.93761 1.03266 1.02240 1.22694 0.95817 0.82814 1.01158 1.87994 1.21221 1.28221 1.95154 1.23030 0.81279 0.96501 0.96597 0.89134 1.22588 1.01012 0.98749 0.94947 1.22247 1.00936 0.96846 0.95291 1.22808 0.97477 1.00952 0.95695 1.21731 0.96932 0.97178 0.78937 0.91893 1.44881 1.72972 1.11002 1.08878 1.16170 0.78240 0.84837 0.81227 1.90887 1.56310 1.23560 1.79513 1.41868 1.68000 1.14468 1.06308 1.17093 1.11232 0.88004 0.88895 1.20527 1.02059 0.99317 0.92177 1.21166 1.04862 0.92140 0.99592 1.18033 0.90424 0.93507 0.91771 1.19725 1.16253 1.06568 1.10306 0.91033 1.26735 0.93912 0.99448 0.98410 1.69837 1.17571 1.28880 1.30815 0.85056 0.78789 0.77737 0.77429 1.18450 1.18641 1.19527 1.20932 1.11822 0.97679 0.93553 1.20512 1.00486 0.92585 0.98210 0.93487 0.88972 0.92261 0.92633 0.91467 0.88443 0.90432 0.89118 0.92038 0.93007 0.89530 0.75224 0.74861 0.85727 0.86232 0.90551 0.88720 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.28 71.98 0.74 -1.46 16 2 C 0.05 0.74 6.50 71.98 0.47 1.21 16 3 O -0.41 -8.65 9.91 -148.98 -1.48 -10.13 16 4 C 0.08 1.42 3.11 31.39 0.10 1.52 16 5 H 0.09 1.08 7.39 -2.39 -0.02 1.06 16 6 C -0.13 -1.70 6.60 31.32 0.21 -1.50 16 7 C -0.12 -1.72 6.83 31.67 0.22 -1.50 16 8 C -0.13 -2.67 6.56 31.88 0.21 -2.46 16 9 C 0.16 3.80 2.90 46.14 0.13 3.93 16 10 H 0.06 2.07 7.61 -2.39 -0.02 2.05 16 11 N -0.72 -17.78 5.19 -452.34 -2.35 -20.13 16 12 C 0.69 24.96 8.39 179.06 1.50 26.46 16 13 O -0.62 -28.95 13.47 -3.97 -0.05 -29.01 16 14 N -0.66 -22.78 5.31 -316.79 -1.68 -24.47 16 15 C 0.04 1.90 6.31 38.56 0.24 2.14 16 16 C -0.12 -5.53 9.90 22.13 0.22 -5.31 16 17 C -0.16 -8.42 8.62 22.48 0.19 -8.23 16 18 C 0.07 3.70 5.55 -21.27 -0.12 3.58 16 19 C -0.50 -28.09 9.02 23.39 0.21 -27.88 16 20 H 0.07 3.92 7.85 -2.91 -0.02 3.90 16 21 C 0.03 1.39 5.42 85.23 0.46 1.85 16 22 N -0.84 -45.50 10.60 21.82 0.23 -45.27 16 23 Si 0.99 40.17 29.56 68.60 2.03 42.20 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 26 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 27 C -0.22 -11.91 9.74 22.48 0.22 -11.69 16 28 C -0.10 -4.93 8.61 22.13 0.19 -4.74 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 1.02 7.96 -2.39 -0.02 1.00 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.41 6.74 8.35 -92.71 -0.77 5.96 16 41 H 0.41 10.40 8.83 -92.71 -0.82 9.58 16 42 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 43 H 0.12 6.62 6.13 -2.91 -0.02 6.61 16 44 H 0.28 13.88 8.30 -92.71 -0.77 13.11 16 45 H 0.09 4.95 8.06 -2.91 -0.02 4.92 16 46 H 0.11 5.38 6.22 -2.91 -0.02 5.36 16 Total: -1.00 -73.42 375.83 1.30 -72.12 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: -0.60 Total: 38.76 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 5.19 Total: -24.08 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -3.80 Total: -89.86 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -1.53 Total: -39.13 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -73.42 1.30 -72.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454350764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.694 kcal (2) G-P(sol) polarization free energy of solvation -73.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds