Wall clock time and date at job start Tue Mar 31 2020 13:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99758 * 2 1 4 4 C 1.52997 * 109.47175 * 269.99897 * 3 2 1 5 5 H 1.09002 * 110.43220 * 54.29758 * 4 3 2 6 6 C 1.54267 * 110.48971 * 291.75833 * 4 3 2 7 7 C 1.53871 * 106.60005 * 217.71311 * 6 4 3 8 8 C 1.54269 * 106.59584 * 359.97438 * 7 6 4 9 9 C 1.54891 * 110.48516 * 176.83893 * 4 3 2 10 10 H 1.08998 * 110.75371 * 38.30825 * 9 4 3 11 11 O 1.42904 * 110.75570 * 274.93647 * 9 4 3 12 12 C 1.34775 * 120.00533 * 180.02562 * 2 1 3 13 13 O 1.21590 * 120.00180 * 180.02562 * 12 2 1 14 14 N 1.34779 * 120.00025 * 359.97438 * 12 2 1 15 15 C 1.39946 * 120.00356 * 175.37421 * 14 12 2 16 16 C 1.39291 * 119.94729 * 35.89504 * 15 14 12 17 17 C 1.38494 * 120.42903 * 180.30311 * 16 15 14 18 18 C 1.37683 * 120.31745 * 359.68347 * 17 16 15 19 19 C 1.40735 * 119.88870 * 0.02562 * 18 17 16 20 20 C 1.41405 * 120.21122 * 179.97438 * 19 18 17 21 21 H 1.07992 * 120.00380 * 24.56682 * 20 19 18 22 22 C 1.39939 * 119.99889 * 204.56711 * 20 19 18 23 23 N 1.30829 * 120.00070 * 15.45670 * 22 20 19 24 24 Si 1.86798 * 119.99773 * 195.45652 * 22 20 19 25 25 H 1.48500 * 109.47290 * 90.00110 * 24 22 20 26 26 H 1.48507 * 109.46697 * 209.99943 * 24 22 20 27 27 H 1.48503 * 109.47309 * 329.99555 * 24 22 20 28 28 C 1.38234 * 119.94591 * 215.60167 * 15 14 12 29 29 H 1.08996 * 109.47002 * 269.99620 * 1 2 3 30 30 H 1.09002 * 109.47324 * 30.00319 * 1 2 3 31 31 H 1.09006 * 109.46435 * 150.00119 * 1 2 3 32 32 H 1.08997 * 109.46883 * 30.00106 * 3 2 1 33 33 H 1.09002 * 109.46954 * 149.99798 * 3 2 1 34 34 H 1.08999 * 110.02694 * 336.99866 * 6 4 3 35 35 H 1.08998 * 110.03041 * 98.37654 * 6 4 3 36 36 H 1.08999 * 110.03399 * 119.28475 * 7 6 4 37 37 H 1.08995 * 110.03302 * 240.66398 * 7 6 4 38 38 H 1.09004 * 110.48406 * 142.29404 * 8 7 6 39 39 H 1.08998 * 110.48344 * 264.79581 * 8 7 6 40 40 H 0.96700 * 113.99822 * 179.97438 * 11 9 4 41 41 H 0.97000 * 119.99713 * 355.37369 * 14 12 2 42 42 H 1.07999 * 119.78445 * 0.02562 * 16 15 14 43 43 H 1.07994 * 119.84038 * 179.70158 * 17 16 15 44 44 H 1.07998 * 120.05127 * 179.97438 * 18 17 16 45 45 H 0.96999 * 120.00098 * 180.02562 * 23 22 20 46 46 H 1.07994 * 120.16695 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5166 1.7484 -1.9999 6 6 3.4523 0.7580 -2.1301 7 6 4.3467 1.6321 -3.0266 8 6 3.8588 3.0852 -2.8529 9 6 3.1564 3.0899 -1.4706 10 1 3.8882 3.1666 -0.6665 11 8 2.1998 4.1484 -1.3893 12 6 2.1390 -1.1671 -0.0005 13 8 3.3549 -1.1670 -0.0001 14 7 1.4652 -2.3344 -0.0005 15 6 2.1615 -3.5444 -0.0988 16 6 3.4025 -3.6845 0.5180 17 6 4.1031 -4.8754 0.4219 18 6 3.5767 -5.9367 -0.2796 19 6 2.3212 -5.8118 -0.9030 20 6 1.7744 -6.8972 -1.6257 21 1 2.0788 -7.9074 -1.3953 22 6 0.8388 -6.6624 -2.6395 23 7 0.6913 -5.4574 -3.1273 24 14 -0.1994 -8.0695 -3.2964 25 1 -1.4522 -8.1715 -2.5056 26 1 -0.5327 -7.8155 -4.7211 27 1 0.5612 -9.3401 -3.1849 28 6 1.6139 -4.6005 -0.8028 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3632 -0.8901 -0.5139 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1385 0.5139 34 1 4.0585 0.2488 -1.3809 35 1 2.9159 0.0273 -2.7355 36 1 5.3870 1.5471 -2.7125 37 1 4.2452 1.3256 -4.0676 38 1 4.7036 3.7740 -2.8543 39 1 3.1529 3.3473 -3.6410 40 1 2.5900 5.0331 -1.4028 41 1 0.4976 -2.3358 0.0676 42 1 3.8232 -2.8577 1.0710 43 1 5.0667 -4.9720 0.8999 44 1 4.1269 -6.8632 -0.3522 45 1 0.0426 -5.2946 -3.8298 46 1 0.6494 -4.4946 -1.2770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455900039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:06 Heat of formation + Delta-G solvation = -60.114081 kcal Electronic energy + Delta-G solvation = -27092.001538 eV Core-core repulsion = 23367.049165 eV Total energy + Delta-G solvation = -3724.952373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.24924 -38.80844 -37.34977 -35.56668 -34.89501 -34.20572 -33.20693 -30.46198 -29.45408 -28.12643 -27.60545 -26.66065 -25.19870 -24.46997 -21.24295 -20.96469 -20.79592 -19.82205 -19.19273 -17.97133 -17.43570 -17.35290 -16.00219 -15.88724 -15.38479 -14.95765 -14.69960 -14.49432 -14.40540 -13.89578 -13.79750 -13.32994 -13.10980 -12.84968 -12.74933 -12.69674 -12.33952 -12.29709 -12.04980 -11.72361 -11.60499 -11.21866 -11.12198 -11.04228 -10.79900 -10.70386 -10.57035 -10.43377 -10.33022 -10.07299 -9.91207 -9.82085 -9.43901 -9.19100 -8.81189 -8.42736 -7.30878 -6.88117 -6.65957 -4.32858 2.76694 2.91203 3.01376 3.08799 3.12416 3.28121 3.74380 3.96059 4.02137 4.33389 4.51938 4.59754 4.69582 4.85421 5.12124 5.15320 5.20972 5.32658 5.48125 5.48881 5.55735 5.59302 5.67188 5.73534 5.79114 5.83537 5.91983 6.12497 6.16110 6.31245 6.42074 6.56958 6.64875 6.76352 6.80765 6.94750 7.06897 7.11918 7.28400 7.40623 7.45599 7.71101 7.88594 8.04719 8.10132 8.31982 8.48764 8.66884 8.94313 8.97716 9.13748 10.24397 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016449 B = 0.003223 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.852004 B = 8686.225787 C = 9053.799788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.636 5.636 3 C 0.144 3.856 4 C -0.097 4.097 5 H 0.079 0.921 6 C -0.125 4.125 7 C -0.122 4.122 8 C -0.154 4.154 9 C 0.102 3.898 10 H 0.066 0.934 11 O -0.564 6.564 12 C 0.704 3.296 13 O -0.569 6.569 14 N -0.678 5.678 15 C 0.160 3.840 16 C -0.224 4.224 17 C -0.089 4.089 18 C -0.229 4.229 19 C 0.119 3.881 20 C -0.463 4.463 21 H 0.077 0.923 22 C 0.075 3.925 23 N -0.799 5.799 24 Si 0.908 3.092 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.263 1.263 28 C -0.185 4.185 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.375 0.625 41 H 0.395 0.605 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.277 0.723 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 16.535 2.287 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.374 5.374 3 C 0.021 3.979 4 C -0.117 4.117 5 H 0.098 0.902 6 C -0.162 4.162 7 C -0.160 4.160 8 C -0.192 4.192 9 C 0.043 3.957 10 H 0.084 0.916 11 O -0.370 6.370 12 C 0.406 3.594 13 O -0.446 6.446 14 N -0.325 5.325 15 C 0.068 3.932 16 C -0.245 4.245 17 C -0.108 4.108 18 C -0.249 4.249 19 C 0.116 3.884 20 C -0.494 4.494 21 H 0.095 0.905 22 C -0.141 4.141 23 N -0.425 5.425 24 Si 0.732 3.268 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.187 1.187 28 C -0.206 4.206 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.222 0.778 41 H 0.231 0.769 42 H 0.125 0.875 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.816 16.170 2.112 16.328 hybrid contribution -0.710 -0.064 -0.650 0.964 sum -1.526 16.106 1.462 16.244 Atomic orbital electron populations 1.21711 0.80266 1.03111 1.01441 1.47013 1.06091 1.04981 1.79330 1.21315 0.97602 0.83479 0.95524 1.22367 0.99563 0.92407 0.97323 0.90242 1.22335 0.97260 0.97081 0.99539 1.22040 0.99740 0.93920 1.00293 1.23032 1.00182 0.97808 0.98132 1.22869 0.89900 0.87040 0.95918 0.91574 1.86507 1.36312 1.17163 1.96977 1.15866 0.85476 0.80151 0.77932 1.90844 1.11248 1.85556 1.56933 1.42712 1.09547 1.04055 1.76156 1.17445 0.93665 0.83730 0.98395 1.20469 0.97333 0.98085 1.08583 1.20433 0.97733 0.93503 0.99105 1.21024 0.97382 0.98381 1.08126 1.17342 0.89551 0.92074 0.89415 1.19533 1.20540 0.94399 1.14897 0.90462 1.25878 0.96150 0.96523 0.95587 1.69831 1.29294 1.21941 1.21459 0.86328 0.80431 0.81928 0.78076 1.19415 1.20450 1.18689 1.21103 1.02288 0.94056 1.03195 0.92856 0.90963 0.91334 0.90665 0.89814 0.88467 0.91935 0.91755 0.91911 0.91775 0.90981 0.77821 0.76944 0.87466 0.89186 0.89012 0.91167 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.16 59.85 0.61 1.47 16 2 N -0.64 -9.17 2.83 -187.34 -0.53 -9.71 16 3 C 0.14 1.84 4.96 -4.04 -0.02 1.82 16 4 C -0.10 -1.21 2.82 -88.96 -0.25 -1.47 16 5 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 6 C -0.12 -1.83 5.43 -25.61 -0.14 -1.97 16 7 C -0.12 -1.47 6.80 -25.61 -0.17 -1.64 16 8 C -0.15 -1.51 6.56 -24.98 -0.16 -1.68 16 9 C 0.10 1.04 3.71 -24.65 -0.09 0.95 16 10 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 11 O -0.56 -5.40 13.45 -35.23 -0.47 -5.87 16 12 C 0.70 13.28 7.58 -86.92 -0.66 12.62 16 13 O -0.57 -12.39 10.89 5.29 0.06 -12.33 16 14 N -0.68 -13.32 5.17 -14.27 -0.07 -13.39 16 15 C 0.16 3.81 6.27 -83.76 -0.53 3.29 16 16 C -0.22 -5.42 8.70 -39.10 -0.34 -5.76 16 17 C -0.09 -2.12 10.02 -39.69 -0.40 -2.51 16 18 C -0.23 -5.78 9.79 -38.84 -0.38 -6.16 16 19 C 0.12 3.20 5.58 -106.85 -0.60 2.61 16 20 C -0.46 -12.32 9.06 -37.74 -0.34 -12.67 16 21 H 0.08 1.98 7.89 -52.49 -0.41 1.57 16 22 C 0.08 1.88 5.19 -17.34 -0.09 1.79 16 23 N -0.80 -20.61 10.82 55.55 0.60 -20.01 16 24 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 28 C -0.18 -4.76 8.61 -38.68 -0.33 -5.09 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 31 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 32 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.08 1.17 7.28 -51.93 -0.38 0.79 16 34 H 0.10 1.69 5.48 -51.93 -0.28 1.40 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.38 1.93 9.12 45.56 0.42 2.35 16 41 H 0.40 6.60 6.62 -40.82 -0.27 6.33 16 42 H 0.11 2.59 6.26 -52.49 -0.33 2.26 16 43 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 44 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 45 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 46 H 0.12 3.22 6.07 -52.49 -0.32 2.91 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -31.14 366.09 -9.94 -41.08 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -6.11 Total: 15.47 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -3.89 Total: -14.39 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.00 Total: -43.11 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.42 Total: -18.21 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.14 -9.94 -41.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455900039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.038 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds