Wall clock time and date at job start Tue Mar 31 2020 12:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47285 * 2 1 4 4 C 1.42891 * 114.00231 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47524 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47584 * 175.50338 * 5 4 3 7 7 C 1.50700 * 112.85033 * 293.60985 * 6 5 4 8 8 O 1.21279 * 120.00217 * 114.50179 * 7 6 5 9 9 N 1.34778 * 120.00133 * 294.50823 * 7 6 5 10 10 C 1.39471 * 120.00152 * 174.38033 * 9 7 6 11 11 C 1.38592 * 119.57854 * 19.91083 * 10 9 7 12 12 C 1.40821 * 118.79111 * 179.73896 * 11 10 9 13 13 C 1.41543 * 120.99032 * 180.23550 * 12 11 10 14 14 H 1.07998 * 119.99757 * 207.86127 * 13 12 11 15 15 C 1.40027 * 120.00373 * 27.87191 * 13 12 11 16 16 N 1.30747 * 120.00018 * 12.17508 * 15 13 12 17 17 Si 1.86804 * 120.00116 * 192.18358 * 15 13 12 18 18 H 1.48494 * 109.47238 * 94.97409 * 17 15 13 19 19 H 1.48498 * 109.47100 * 214.97532 * 17 15 13 20 20 H 1.48501 * 109.46750 * 334.97133 * 17 15 13 21 21 C 1.41166 * 118.00710 * 0.51819 * 12 11 10 22 22 C 1.37593 * 119.01678 * 359.73792 * 21 12 11 23 23 N 1.32079 * 121.10845 * 0.02562 * 22 21 12 24 24 C 1.53777 * 113.61767 * 162.30206 * 6 5 4 25 25 C 1.53781 * 87.08338 * 220.01933 * 24 6 5 26 26 C 1.53781 * 87.08158 * 25.42999 * 25 24 6 27 27 H 1.09001 * 109.47304 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47266 * 299.99993 * 1 2 3 29 29 H 1.09000 * 109.47239 * 59.99613 * 1 2 3 30 30 H 1.09007 * 109.46973 * 240.00473 * 2 1 3 31 31 H 1.09000 * 109.47239 * 120.00387 * 2 1 3 32 32 H 1.09005 * 109.47469 * 300.00537 * 4 3 2 33 33 H 1.09009 * 109.47178 * 60.00319 * 4 3 2 34 34 H 1.09004 * 109.47229 * 295.50699 * 5 4 3 35 35 H 1.08999 * 109.46973 * 55.50359 * 5 4 3 36 36 H 0.97000 * 119.99581 * 354.38348 * 9 7 6 37 37 H 1.07998 * 120.60675 * 359.97438 * 11 10 9 38 38 H 0.96999 * 119.99846 * 180.02562 * 16 15 13 39 39 H 1.08003 * 120.49189 * 179.76303 * 21 12 11 40 40 H 1.08000 * 119.43999 * 180.02562 * 22 21 12 41 41 H 1.08996 * 113.61783 * 334.56901 * 24 6 5 42 42 H 1.09005 * 113.61458 * 105.46983 * 24 6 5 43 43 H 1.09006 * 113.61150 * 270.88449 * 25 24 6 44 44 H 1.09005 * 113.61529 * 139.98434 * 25 24 6 45 45 H 1.08997 * 113.61554 * 220.01647 * 26 25 24 46 46 H 1.08995 * 113.60926 * 89.11425 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3463 3.0603 0.1149 7 6 5.8745 2.5780 1.4413 8 8 6.5900 1.5999 1.4897 9 7 5.5516 3.2334 2.5739 10 6 5.9422 2.7218 3.8112 11 6 6.9809 1.8067 3.8761 12 6 7.3653 1.3050 5.1345 13 6 8.4232 0.3725 5.2552 14 1 8.4341 -0.3284 6.0768 15 6 9.4558 0.3587 4.3095 16 7 9.5768 1.3446 3.4593 17 14 10.6603 -1.0684 4.2624 18 1 10.2071 -2.0658 3.2600 19 1 12.0071 -0.5672 3.8882 20 1 10.7242 -1.7065 5.6018 21 6 6.6598 1.7555 6.2713 22 6 5.6381 2.6622 6.1068 23 7 5.3115 3.1124 4.9087 24 6 5.8866 4.4386 -0.3011 25 6 7.0495 3.6919 -0.9755 26 6 6.1025 2.4861 -1.0948 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8333 0.9766 0.8908 33 1 3.8340 0.9764 -0.8893 34 1 3.4919 3.4038 -0.9263 35 1 3.3565 3.4392 0.8481 36 1 5.0477 4.0610 2.5284 37 1 7.4890 1.4870 2.9783 38 1 10.2919 1.3348 2.8040 39 1 6.9185 1.3940 7.2556 40 1 5.0942 3.0118 6.9718 41 1 5.2414 4.9669 -1.0029 42 1 6.1955 5.0586 0.5406 43 1 7.8981 3.5168 -0.3141 44 1 7.3410 4.1150 -1.9369 45 1 6.5857 1.5299 -0.8941 46 1 5.5163 2.4807 -2.0137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533218181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:10 Heat of formation + Delta-G solvation = -35.535637 kcal Electronic energy + Delta-G solvation = -27337.265579 eV Core-core repulsion = 23613.379007 eV Total energy + Delta-G solvation = -3723.886572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77740 -38.63543 -37.89253 -36.91131 -34.41555 -33.58053 -32.49830 -30.54165 -30.39855 -28.63138 -25.95885 -25.81135 -25.23736 -22.92087 -22.83618 -21.92025 -21.44574 -20.50040 -18.68494 -17.78376 -16.80226 -16.37442 -16.19528 -15.94250 -15.27573 -15.20045 -14.78542 -14.53630 -14.22197 -14.14028 -13.96741 -13.44938 -13.23539 -12.68250 -12.59424 -12.50757 -12.48524 -12.43278 -12.28043 -12.03577 -11.45537 -11.37535 -11.23935 -11.10537 -11.06366 -10.91611 -10.77700 -10.41167 -10.25982 -10.18191 -10.14360 -9.70321 -9.59439 -9.28692 -8.68007 -8.05836 -7.85040 -7.00814 -6.70929 -4.51501 2.54987 2.88181 3.08564 3.11840 3.15074 3.38472 3.48474 3.59408 3.93848 4.43419 4.57759 4.73721 4.81912 4.85119 4.94279 5.04277 5.09618 5.14253 5.26276 5.40268 5.44614 5.52500 5.64239 5.69036 5.71884 5.77011 5.77820 5.85823 5.91334 5.94352 5.96831 6.02662 6.16481 6.23971 6.43686 6.56536 6.79114 6.83044 7.08209 7.17395 7.19667 7.42661 7.63359 7.91400 7.96005 8.37463 8.53732 8.78880 8.84155 8.95354 9.57034 10.19819 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010772 B = 0.004151 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.774376 B = 6744.413065 C = 7257.747836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.391 6.391 4 C 0.062 3.938 5 C -0.094 4.094 6 C -0.103 4.103 7 C 0.530 3.470 8 O -0.496 6.496 9 N -0.645 5.645 10 C 0.313 3.687 11 C -0.218 4.218 12 C 0.133 3.867 13 C -0.455 4.455 14 H 0.081 0.919 15 C 0.077 3.923 16 N -0.778 5.778 17 Si 0.912 3.088 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.287 4.287 22 C 0.119 3.881 23 N -0.600 5.600 24 C -0.124 4.124 25 C -0.141 4.141 26 C -0.119 4.119 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.400 0.600 37 H 0.179 0.821 38 H 0.281 0.719 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.927 2.173 -11.223 14.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.311 6.311 4 C -0.014 4.014 5 C -0.132 4.132 6 C -0.106 4.106 7 C 0.315 3.685 8 O -0.370 6.370 9 N -0.288 5.288 10 C 0.092 3.908 11 C -0.242 4.242 12 C 0.125 3.875 13 C -0.486 4.486 14 H 0.099 0.901 15 C -0.143 4.143 16 N -0.403 5.403 17 Si 0.736 3.264 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.311 4.311 22 C -0.036 4.036 23 N -0.321 5.321 24 C -0.161 4.161 25 C -0.179 4.179 26 C -0.157 4.157 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.234 0.766 37 H 0.195 0.805 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.141 0.859 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.089 2.317 -11.523 14.858 hybrid contribution 1.114 -0.944 0.240 1.480 sum -7.975 1.373 -11.283 13.885 Atomic orbital electron populations 1.21734 0.93856 1.02110 1.02998 1.22444 0.95406 0.83958 1.00226 1.87818 1.21349 1.26396 1.95516 1.22477 0.80809 0.97284 1.00867 1.21382 0.92335 0.95711 1.03757 1.21953 0.95199 0.99571 0.93912 1.19763 0.80842 0.83596 0.84267 1.90650 1.34473 1.26200 1.85631 1.43016 1.55356 1.26108 1.04363 1.18164 0.93006 0.95734 0.83942 1.23108 0.97584 1.02041 1.01422 1.17840 0.90074 0.89433 0.90186 1.19570 1.04395 1.15420 1.09242 0.90122 1.25934 0.98449 0.96104 0.93795 1.69745 1.28458 1.28125 1.13975 0.86243 0.79012 0.81403 0.79737 1.19258 1.20170 1.18548 1.21882 1.04618 1.06211 0.98397 1.21495 0.95088 0.94642 0.92407 1.66572 1.33132 1.34117 0.98258 1.22989 0.97959 0.94270 1.00917 1.22852 0.97339 0.96586 1.01084 1.22870 0.97342 0.99885 0.95602 0.91219 0.91816 0.92015 0.93542 0.93268 0.92979 0.93011 0.90084 0.90461 0.76589 0.80481 0.90771 0.88084 0.85897 0.89036 0.90836 0.89494 0.91174 0.89641 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.06 0.66 6.66 37.16 0.25 0.90 16 3 O -0.39 -5.47 10.34 -35.23 -0.36 -5.83 16 4 C 0.06 0.86 5.64 37.16 0.21 1.07 16 5 C -0.09 -1.17 5.01 -26.73 -0.13 -1.30 16 6 C -0.10 -1.41 0.79 -154.85 -0.12 -1.53 16 7 C 0.53 10.11 5.55 -10.99 -0.06 10.05 16 8 O -0.50 -11.54 12.56 5.56 0.07 -11.47 16 9 N -0.64 -12.94 5.42 -11.49 -0.06 -13.00 16 10 C 0.31 7.77 7.52 -154.70 -1.16 6.60 16 11 C -0.22 -5.99 7.57 -38.47 -0.29 -6.28 16 12 C 0.13 3.69 5.57 -106.55 -0.59 3.10 16 13 C -0.46 -12.39 9.12 -37.65 -0.34 -12.73 16 14 H 0.08 2.09 7.88 -52.49 -0.41 1.67 16 15 C 0.08 1.99 5.26 -17.34 -0.09 1.90 16 16 N -0.78 -20.78 10.93 55.55 0.61 -20.17 16 17 Si 0.91 19.18 29.58 -169.99 -5.03 14.15 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 C -0.29 -7.21 9.90 -38.71 -0.38 -7.59 16 22 C 0.12 2.78 11.15 -17.68 -0.20 2.59 16 23 N -0.60 -14.63 10.36 -12.52 -0.13 -14.76 16 24 C -0.12 -1.41 7.22 -25.92 -0.19 -1.60 16 25 C -0.14 -1.73 7.80 -25.92 -0.20 -1.93 16 26 C -0.12 -1.51 6.44 -25.92 -0.17 -1.67 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.86 7.47 -51.93 -0.39 0.48 16 33 H 0.05 0.65 7.75 -51.92 -0.40 0.25 16 34 H 0.08 0.83 8.05 -51.93 -0.42 0.42 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.40 6.81 8.83 -40.82 -0.36 6.45 16 37 H 0.18 5.07 3.33 -53.43 -0.18 4.89 16 38 H 0.28 6.88 8.29 -40.82 -0.34 6.54 16 39 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 40 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 41 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16 42 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 43 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 1.27 7.34 -51.93 -0.38 0.89 16 46 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -31.61 376.42 -9.49 -41.11 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -7.16 Total: 13.76 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -3.10 Total: -9.45 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.42 Total: -47.94 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.29 Total: -17.30 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.61 -9.49 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533218181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.569 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds