Wall clock time and date at job start Tue Mar 31 2020 12:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47285 * 2 1 4 4 C 1.42891 * 114.00231 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47524 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47584 * 175.50338 * 5 4 3 7 7 C 1.50700 * 112.85033 * 293.60985 * 6 5 4 8 8 O 1.21279 * 120.00217 * 114.50179 * 7 6 5 9 9 N 1.34778 * 120.00133 * 294.50823 * 7 6 5 10 10 C 1.39471 * 120.00152 * 174.38033 * 9 7 6 11 11 C 1.38592 * 119.57854 * 19.91083 * 10 9 7 12 12 C 1.40821 * 118.79111 * 179.73896 * 11 10 9 13 13 C 1.41543 * 120.99032 * 180.23550 * 12 11 10 14 14 H 1.07998 * 119.99757 * 207.86127 * 13 12 11 15 15 C 1.40027 * 120.00373 * 27.87191 * 13 12 11 16 16 N 1.30747 * 120.00018 * 12.17508 * 15 13 12 17 17 Si 1.86804 * 120.00116 * 192.18358 * 15 13 12 18 18 H 1.48494 * 109.47238 * 94.97409 * 17 15 13 19 19 H 1.48498 * 109.47100 * 214.97532 * 17 15 13 20 20 H 1.48501 * 109.46750 * 334.97133 * 17 15 13 21 21 C 1.41166 * 118.00710 * 0.51819 * 12 11 10 22 22 C 1.37593 * 119.01678 * 359.73792 * 21 12 11 23 23 N 1.32079 * 121.10845 * 0.02562 * 22 21 12 24 24 C 1.53777 * 113.61767 * 162.30206 * 6 5 4 25 25 C 1.53781 * 87.08338 * 220.01933 * 24 6 5 26 26 C 1.53781 * 87.08158 * 25.42999 * 25 24 6 27 27 H 1.09001 * 109.47304 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47266 * 299.99993 * 1 2 3 29 29 H 1.09000 * 109.47239 * 59.99613 * 1 2 3 30 30 H 1.09007 * 109.46973 * 240.00473 * 2 1 3 31 31 H 1.09000 * 109.47239 * 120.00387 * 2 1 3 32 32 H 1.09005 * 109.47469 * 300.00537 * 4 3 2 33 33 H 1.09009 * 109.47178 * 60.00319 * 4 3 2 34 34 H 1.09004 * 109.47229 * 295.50699 * 5 4 3 35 35 H 1.08999 * 109.46973 * 55.50359 * 5 4 3 36 36 H 0.97000 * 119.99581 * 354.38348 * 9 7 6 37 37 H 1.07998 * 120.60675 * 359.97438 * 11 10 9 38 38 H 0.96999 * 119.99846 * 180.02562 * 16 15 13 39 39 H 1.08003 * 120.49189 * 179.76303 * 21 12 11 40 40 H 1.08000 * 119.43999 * 180.02562 * 22 21 12 41 41 H 1.08996 * 113.61783 * 334.56901 * 24 6 5 42 42 H 1.09005 * 113.61458 * 105.46983 * 24 6 5 43 43 H 1.09006 * 113.61150 * 270.88449 * 25 24 6 44 44 H 1.09005 * 113.61529 * 139.98434 * 25 24 6 45 45 H 1.08997 * 113.61554 * 220.01647 * 26 25 24 46 46 H 1.08995 * 113.60926 * 89.11425 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3463 3.0603 0.1149 7 6 5.8745 2.5780 1.4413 8 8 6.5900 1.5999 1.4897 9 7 5.5516 3.2334 2.5739 10 6 5.9422 2.7218 3.8112 11 6 6.9809 1.8067 3.8761 12 6 7.3653 1.3050 5.1345 13 6 8.4232 0.3725 5.2552 14 1 8.4341 -0.3284 6.0768 15 6 9.4558 0.3587 4.3095 16 7 9.5768 1.3446 3.4593 17 14 10.6603 -1.0684 4.2624 18 1 10.2071 -2.0658 3.2600 19 1 12.0071 -0.5672 3.8882 20 1 10.7242 -1.7065 5.6018 21 6 6.6598 1.7555 6.2713 22 6 5.6381 2.6622 6.1068 23 7 5.3115 3.1124 4.9087 24 6 5.8866 4.4386 -0.3011 25 6 7.0495 3.6919 -0.9755 26 6 6.1025 2.4861 -1.0948 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8333 0.9766 0.8908 33 1 3.8340 0.9764 -0.8893 34 1 3.4919 3.4038 -0.9263 35 1 3.3565 3.4392 0.8481 36 1 5.0477 4.0610 2.5284 37 1 7.4890 1.4870 2.9783 38 1 10.2919 1.3348 2.8040 39 1 6.9185 1.3940 7.2556 40 1 5.0942 3.0118 6.9718 41 1 5.2414 4.9669 -1.0029 42 1 6.1955 5.0586 0.5406 43 1 7.8981 3.5168 -0.3141 44 1 7.3410 4.1150 -1.9369 45 1 6.5857 1.5299 -0.8941 46 1 5.5163 2.4807 -2.0137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533218181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:09 Heat of formation + Delta-G solvation = -54.935071 kcal Electronic energy + Delta-G solvation = -27338.106801 eV Core-core repulsion = 23613.379007 eV Total energy + Delta-G solvation = -3724.727794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16910 -40.29763 -39.03680 -38.37082 -36.28919 -35.40974 -33.46601 -32.49867 -31.41811 -30.41516 -27.90529 -26.97923 -26.34210 -24.43770 -23.73203 -23.66330 -22.77861 -22.07619 -20.23976 -19.54585 -17.89125 -17.83633 -17.58910 -17.28513 -17.11734 -16.55230 -16.20454 -16.06236 -15.60854 -15.56456 -15.12130 -15.00854 -14.77294 -14.39974 -14.17733 -14.12566 -13.53317 -13.37255 -13.27488 -13.23532 -13.06571 -12.90662 -12.73745 -12.43128 -12.33562 -12.05401 -12.04227 -11.94544 -11.79151 -11.51047 -11.28328 -11.21670 -11.17205 -10.65049 -10.41118 -10.03531 -9.84396 -8.90881 -8.65287 -6.57963 0.69805 0.98373 1.33204 1.44769 1.48440 1.70684 1.98320 2.15886 2.56347 2.77064 3.34985 3.52616 3.64503 3.70966 3.87378 3.95529 4.03279 4.12566 4.14055 4.16952 4.37999 4.40026 4.43457 4.53328 4.72716 4.77051 4.81000 4.83652 4.86856 4.88470 4.90030 4.98208 5.01683 5.04432 5.11538 5.14785 5.20444 5.23429 5.28634 5.46321 5.51701 5.66945 5.97282 6.15236 6.20359 6.46796 6.55131 6.80302 6.88559 7.25700 7.62395 8.27026 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010772 B = 0.004151 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.774376 B = 6744.413065 C = 7257.747836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 O -0.401 6.401 4 C 0.064 3.936 5 C -0.086 4.086 6 C -0.101 4.101 7 C 0.525 3.475 8 O -0.543 6.543 9 N -0.640 5.640 10 C 0.313 3.687 11 C -0.256 4.256 12 C 0.101 3.899 13 C -0.490 4.490 14 H 0.084 0.916 15 C 0.033 3.967 16 N -0.810 5.810 17 Si 0.987 3.013 18 H -0.267 1.267 19 H -0.263 1.263 20 H -0.251 1.251 21 C -0.303 4.303 22 C 0.120 3.880 23 N -0.601 5.601 24 C -0.108 4.108 25 C -0.144 4.144 26 C -0.115 4.115 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.010 0.990 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.415 0.585 37 H 0.164 0.836 38 H 0.287 0.713 39 H 0.117 0.883 40 H 0.167 0.833 41 H 0.136 0.864 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.101 0.899 45 H 0.052 0.948 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 3.078 -12.990 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 O -0.321 6.321 4 C -0.013 4.013 5 C -0.124 4.124 6 C -0.104 4.104 7 C 0.313 3.687 8 O -0.419 6.419 9 N -0.285 5.285 10 C 0.090 3.910 11 C -0.281 4.281 12 C 0.093 3.907 13 C -0.520 4.520 14 H 0.102 0.898 15 C -0.184 4.184 16 N -0.435 5.435 17 Si 0.807 3.193 18 H -0.192 1.192 19 H -0.187 1.187 20 H -0.174 1.174 21 C -0.326 4.326 22 C -0.035 4.035 23 N -0.322 5.322 24 C -0.145 4.145 25 C -0.181 4.181 26 C -0.152 4.152 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.252 0.748 37 H 0.181 0.819 38 H 0.097 0.903 39 H 0.135 0.865 40 H 0.184 0.816 41 H 0.154 0.846 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.120 0.880 45 H 0.071 0.929 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.352 3.258 -13.288 17.157 hybrid contribution 1.420 -1.211 0.800 2.030 sum -8.933 2.047 -12.488 15.490 Atomic orbital electron populations 1.21740 0.91949 1.03483 1.03013 1.22675 0.97013 0.83110 1.00230 1.87801 1.21074 1.27705 1.95488 1.22452 0.80975 0.98343 0.99529 1.21402 0.90753 0.94690 1.05519 1.21948 0.96168 1.01681 0.90644 1.20891 0.79500 0.82591 0.85671 1.90624 1.36519 1.28308 1.86437 1.43054 1.55368 1.26757 1.03291 1.18421 0.92107 0.94828 0.85685 1.23148 0.99443 1.04308 1.01167 1.18301 0.90976 0.90189 0.91275 1.19886 1.05372 1.16269 1.10519 0.89804 1.26878 1.00014 0.98643 0.92833 1.69832 1.29266 1.29926 1.14504 0.85128 0.76702 0.77469 0.80037 1.19244 1.18748 1.17416 1.22123 1.05170 1.06909 0.98431 1.22167 0.94437 0.93417 0.93444 1.66786 1.32876 1.34058 0.98476 1.23071 0.97552 0.92652 1.01236 1.22811 0.96447 0.96929 1.01930 1.22964 0.97482 0.98371 0.96429 0.89222 0.92594 0.91130 0.92098 0.94775 0.97110 0.91668 0.86218 0.90910 0.74785 0.81922 0.90290 0.86529 0.81639 0.84637 0.91655 0.93420 0.88042 0.92885 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 10.28 71.98 0.74 -1.76 16 2 C 0.05 1.04 6.66 71.98 0.48 1.52 16 3 O -0.40 -10.77 10.34 -148.98 -1.54 -12.31 16 4 C 0.06 1.73 5.64 71.98 0.41 2.13 16 5 C -0.09 -1.94 5.01 30.59 0.15 -1.79 16 6 C -0.10 -2.65 0.79 -52.40 -0.04 -2.69 16 7 C 0.53 20.77 5.55 87.66 0.49 21.25 16 8 O -0.54 -27.01 12.56 -3.03 -0.04 -27.04 16 9 N -0.64 -26.36 5.42 -308.66 -1.67 -28.03 16 10 C 0.31 16.04 7.52 132.75 1.00 17.04 16 11 C -0.26 -14.87 7.57 22.99 0.17 -14.70 16 12 C 0.10 5.86 5.57 -21.11 -0.12 5.74 16 13 C -0.49 -27.80 9.12 23.52 0.21 -27.59 16 14 H 0.08 4.50 7.88 -2.91 -0.02 4.48 16 15 C 0.03 1.77 5.26 85.29 0.45 2.22 16 16 N -0.81 -45.33 10.93 21.84 0.24 -45.09 16 17 Si 0.99 40.28 29.58 68.60 2.03 42.31 16 18 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 20 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 21 C -0.30 -15.50 9.90 22.84 0.23 -15.27 16 22 C 0.12 5.59 11.15 84.50 0.94 6.53 16 23 N -0.60 -29.45 10.36 -193.53 -2.01 -31.45 16 24 C -0.11 -2.15 7.22 31.12 0.22 -1.92 16 25 C -0.14 -3.31 7.80 31.12 0.24 -3.06 16 26 C -0.11 -2.73 6.44 31.12 0.20 -2.53 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.01 0.37 7.47 -2.38 -0.02 0.35 16 33 H 0.07 1.56 7.75 -2.38 -0.02 1.55 16 34 H 0.12 1.86 8.05 -2.38 -0.02 1.84 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.42 14.11 8.83 -92.71 -0.82 13.29 16 37 H 0.16 9.96 3.33 -17.83 -0.06 9.90 16 38 H 0.29 14.65 8.29 -92.71 -0.77 13.88 16 39 H 0.12 5.43 8.06 -2.91 -0.02 5.40 16 40 H 0.17 6.17 8.06 -2.91 -0.02 6.15 16 41 H 0.14 1.62 8.03 -2.39 -0.02 1.60 16 42 H 0.06 1.44 8.10 -2.38 -0.02 1.42 16 43 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.05 1.63 7.34 -2.39 -0.02 1.61 16 46 H 0.13 2.03 8.10 -2.39 -0.02 2.01 16 Total: -1.00 -74.33 376.42 2.91 -71.42 By element: Atomic # 1 Polarization: 44.97 SS G_CDS: 0.12 Total: 45.09 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 5.78 Total: -14.88 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -3.44 Total: -104.58 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -1.58 Total: -39.36 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -74.33 2.91 -71.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533218181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.485 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds