Wall clock time and date at job start Tue Mar 31 2020 12:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.46811 * 2 1 4 4 C 1.35986 * 117.00009 * 179.97438 * 3 2 1 5 5 C 1.38539 * 120.07581 * 359.97438 * 4 3 2 6 6 C 1.38263 * 120.00724 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.17950 * 0.02562 * 6 5 4 8 8 C 1.38203 * 120.15931 * 359.97438 * 7 6 5 9 9 C 1.38709 * 119.98889 * 0.02562 * 8 7 6 10 10 N 1.40167 * 120.09008 * 179.97438 * 9 8 7 11 11 C 1.34772 * 119.99652 * 325.37407 * 10 9 8 12 12 O 1.21592 * 120.00083 * 4.61403 * 11 10 9 13 13 N 1.34773 * 120.00193 * 184.61543 * 11 10 9 14 14 C 1.46933 * 120.62839 * 5.01639 * 13 11 10 15 15 C 1.52756 * 109.01106 * 233.58237 * 14 13 11 16 16 C 1.53039 * 109.38405 * 305.59374 * 15 14 13 17 17 C 1.50697 * 109.45074 * 181.25148 * 16 15 14 18 18 H 1.08003 * 120.00558 * 239.93312 * 17 16 15 19 19 C 1.37887 * 119.99934 * 59.93361 * 17 16 15 20 20 N 1.31511 * 120.00092 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99810 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46985 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46978 * 119.99904 * 21 19 17 24 24 H 1.48502 * 109.46988 * 239.99929 * 21 19 17 25 25 C 1.53043 * 109.54383 * 61.23518 * 16 15 14 26 26 C 1.46928 * 120.63672 * 185.29748 * 13 11 10 27 27 H 1.09003 * 109.46991 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47465 * 300.00104 * 1 2 3 29 29 H 1.08999 * 109.47394 * 60.00367 * 1 2 3 30 30 H 1.08994 * 109.47465 * 239.99896 * 2 1 3 31 31 H 1.09000 * 109.46686 * 119.99393 * 2 1 3 32 32 H 1.07994 * 120.00191 * 0.02562 * 5 4 3 33 33 H 1.08005 * 119.90756 * 180.27566 * 6 5 4 34 34 H 1.07996 * 119.91570 * 179.97438 * 7 6 5 35 35 H 1.07999 * 120.00894 * 180.02562 * 8 7 6 36 36 H 0.96994 * 120.00064 * 145.38413 * 10 9 8 37 37 H 1.08997 * 109.58468 * 353.42112 * 14 13 11 38 38 H 1.09007 * 109.58621 * 113.84223 * 14 13 11 39 39 H 1.08999 * 109.56783 * 185.55253 * 15 14 13 40 40 H 1.09001 * 109.38268 * 65.51400 * 15 14 13 41 41 H 1.09005 * 109.45710 * 301.21439 * 16 15 14 42 42 H 0.96994 * 120.00347 * 179.97438 * 20 19 17 43 43 H 1.08992 * 109.49610 * 178.68603 * 25 16 15 44 44 H 1.08999 * 109.52023 * 58.60307 * 25 16 15 45 45 H 1.09001 * 109.58404 * 246.16140 * 26 13 11 46 46 H 1.08998 * 109.58028 * 6.43632 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1998 0.4280 0.0016 6 6 5.5703 0.6109 0.0027 7 6 6.1012 1.8876 0.0033 8 6 5.2644 2.9875 0.0022 9 6 3.8885 2.8119 0.0011 10 7 3.0379 3.9260 0.0006 11 6 3.3919 5.0443 0.6642 12 8 4.4845 5.1175 1.1927 13 7 2.5348 6.0815 0.7421 14 6 1.1721 5.9685 0.2044 15 6 0.9221 7.1228 -0.7644 16 6 1.2120 8.4497 -0.0591 17 6 0.9364 9.5909 -1.0039 18 1 1.7282 10.2759 -1.2690 19 6 -0.3268 9.7607 -1.5300 20 7 -1.2912 8.9270 -1.2069 21 14 -0.6683 11.1749 -2.7018 22 1 0.5747 11.9621 -2.9029 23 1 -1.1290 10.6362 -4.0066 24 1 -1.7217 12.0500 -2.1277 25 6 2.6793 8.4895 0.3740 26 6 2.9473 7.3488 1.3608 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.7885 -0.5705 0.0016 33 1 6.2279 -0.2459 -0.0010 34 1 7.1723 2.0255 0.0045 35 1 5.6817 3.9836 0.0022 36 1 2.1945 3.8920 -0.4772 37 1 1.0648 5.0208 -0.3231 38 1 0.4517 6.0181 1.0211 39 1 -0.1170 7.1050 -1.0932 40 1 1.5789 7.0189 -1.6280 41 1 0.5717 8.5420 0.8183 42 1 -2.1799 9.0466 -1.5766 43 1 2.8908 9.4442 0.8554 44 1 3.3203 8.3727 -0.4998 45 1 2.3747 7.5131 2.2736 46 1 4.0104 7.3104 1.5982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542900338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:00 Heat of formation + Delta-G solvation = -38.889754 kcal Electronic energy + Delta-G solvation = -27008.120492 eV Core-core repulsion = 23284.088475 eV Total energy + Delta-G solvation = -3724.032017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80379 -39.63863 -37.70959 -36.78076 -34.61574 -33.51912 -32.01232 -31.30677 -30.13285 -29.97178 -28.78616 -26.13005 -24.34401 -23.33887 -22.52277 -21.97001 -21.79290 -20.11786 -18.98618 -18.51697 -17.69469 -16.91525 -16.30543 -16.28892 -15.77527 -15.32502 -14.95058 -14.65957 -14.46837 -13.98838 -13.77971 -13.63127 -13.39161 -13.16202 -12.83273 -12.79919 -12.64963 -12.44582 -12.11187 -12.05860 -11.68487 -11.60283 -11.34510 -11.17646 -10.97487 -10.91836 -10.62554 -10.39637 -10.24347 -10.14718 -9.72631 -9.53655 -9.18133 -8.95627 -8.59749 -8.39836 -8.10564 -7.67068 -6.04795 -4.10699 1.31309 1.40213 2.86974 3.06024 3.26269 3.34922 3.38745 3.39679 3.86336 4.13299 4.39858 4.65806 4.68828 4.83149 4.93885 4.99411 5.12766 5.24544 5.31455 5.41620 5.48795 5.56099 5.59314 5.75377 5.81331 5.86975 5.91887 6.06382 6.14621 6.15600 6.23078 6.27545 6.44759 6.50206 6.62641 6.66278 6.83101 6.87973 6.97076 7.10910 7.18806 7.36649 7.39989 7.65539 7.90260 8.01552 8.19664 8.38713 8.82904 8.93035 9.54567 11.00731 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.003204 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.288378 B = 8738.183699 C = 9843.183092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.316 6.316 4 C 0.097 3.903 5 C -0.193 4.193 6 C -0.105 4.105 7 C -0.138 4.138 8 C -0.086 4.086 9 C 0.147 3.853 10 N -0.682 5.682 11 C 0.706 3.294 12 O -0.591 6.591 13 N -0.612 5.612 14 C 0.109 3.891 15 C -0.125 4.125 16 C 0.049 3.951 17 C -0.510 4.510 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.124 4.124 26 C 0.129 3.871 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.410 0.590 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.039 0.961 41 H 0.028 0.972 42 H 0.260 0.740 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 -18.911 2.084 20.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 O -0.230 6.230 4 C 0.050 3.950 5 C -0.212 4.212 6 C -0.124 4.124 7 C -0.157 4.157 8 C -0.107 4.107 9 C 0.051 3.949 10 N -0.332 5.332 11 C 0.408 3.592 12 O -0.471 6.471 13 N -0.348 5.348 14 C -0.014 4.014 15 C -0.163 4.163 16 C 0.031 3.969 17 C -0.549 4.549 18 H 0.074 0.926 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.163 4.163 26 C 0.007 3.993 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.167 0.833 36 H 0.249 0.751 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.808 -18.646 2.459 20.001 hybrid contribution -0.774 0.414 -0.952 1.295 sum 6.034 -18.232 1.507 19.263 Atomic orbital electron populations 1.21782 0.92679 1.02747 1.03838 1.22746 0.95879 0.81977 1.01157 1.86057 1.18612 1.29253 1.89105 1.18750 0.82682 0.92644 1.00922 1.20975 0.94194 0.97226 1.08847 1.20868 0.94133 0.97284 1.00150 1.20975 0.99820 0.91952 1.02953 1.21301 0.90623 1.00898 0.97861 1.16918 0.89985 0.83263 1.04760 1.42687 1.23923 1.12116 1.54442 1.15804 0.84168 0.80016 0.79185 1.90834 1.21856 1.81568 1.52812 1.47451 1.13265 1.12584 1.61483 1.21867 0.81667 0.99749 0.98089 1.21963 1.04371 0.93792 0.96208 1.18626 0.89664 0.92829 0.95828 1.21249 0.95339 1.11355 1.26924 0.92626 1.24965 0.96261 0.96233 0.96548 1.69838 1.01934 1.36689 1.44628 0.86562 0.78251 0.82524 0.80820 1.19826 1.21089 1.21061 1.22035 1.00766 0.95755 0.97722 1.21622 1.00361 0.81770 0.95551 0.90483 0.91392 0.91340 0.92166 0.92196 0.85475 0.86014 0.85734 0.83286 0.75083 0.92470 0.91689 0.87692 0.94252 0.95386 0.93045 0.91987 0.92938 0.92229 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.50 5.46 37.16 0.20 0.70 16 3 O -0.32 -3.96 9.70 -19.70 -0.19 -4.15 16 4 C 0.10 1.30 6.70 -39.08 -0.26 1.04 16 5 C -0.19 -2.13 9.04 -39.46 -0.36 -2.48 16 6 C -0.11 -1.11 10.04 -39.56 -0.40 -1.51 16 7 C -0.14 -1.65 10.04 -39.58 -0.40 -2.05 16 8 C -0.09 -1.28 8.70 -39.42 -0.34 -1.63 16 9 C 0.15 2.26 6.33 -83.48 -0.53 1.73 16 10 N -0.68 -11.06 5.09 -14.11 -0.07 -11.13 16 11 C 0.71 13.15 8.15 -86.92 -0.71 12.44 16 12 O -0.59 -12.17 13.19 5.28 0.07 -12.10 16 13 N -0.61 -11.32 2.98 -178.76 -0.53 -11.85 16 14 C 0.11 1.97 6.40 -3.93 -0.03 1.94 16 15 C -0.12 -2.72 5.14 -26.84 -0.14 -2.86 16 16 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 17 C -0.51 -13.48 8.56 -34.44 -0.29 -13.78 16 18 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 20 N -0.89 -24.22 11.31 55.43 0.63 -23.59 16 21 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 26 C 0.13 2.39 6.42 -3.71 -0.02 2.36 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 31 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 33 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.15 2.46 6.19 -52.49 -0.32 2.13 16 36 H 0.41 6.16 6.05 -40.82 -0.25 5.91 16 37 H 0.06 0.90 5.57 -51.93 -0.29 0.61 16 38 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 39 H 0.11 2.54 6.03 -51.93 -0.31 2.23 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.08 1.46 7.03 -51.93 -0.37 1.10 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -29.79 364.99 -9.79 -39.58 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.86 Total: 7.04 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -3.31 Total: -5.02 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.02 Total: -46.57 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.12 Total: -16.25 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.79 -9.79 -39.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542900338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.692 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds