Wall clock time and date at job start Tue Mar 31 2020 12:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.46811 * 2 1 4 4 C 1.35986 * 117.00009 * 179.97438 * 3 2 1 5 5 C 1.38539 * 120.07581 * 359.97438 * 4 3 2 6 6 C 1.38263 * 120.00724 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.17950 * 0.02562 * 6 5 4 8 8 C 1.38203 * 120.15931 * 359.97438 * 7 6 5 9 9 C 1.38709 * 119.98889 * 0.02562 * 8 7 6 10 10 N 1.40167 * 120.09008 * 179.97438 * 9 8 7 11 11 C 1.34772 * 119.99652 * 325.37407 * 10 9 8 12 12 O 1.21592 * 120.00083 * 4.61403 * 11 10 9 13 13 N 1.34773 * 120.00193 * 184.61543 * 11 10 9 14 14 C 1.46933 * 120.62839 * 5.01639 * 13 11 10 15 15 C 1.52756 * 109.01106 * 233.58237 * 14 13 11 16 16 C 1.53039 * 109.38405 * 305.59374 * 15 14 13 17 17 C 1.50697 * 109.45074 * 181.25148 * 16 15 14 18 18 H 1.08003 * 120.00558 * 239.93312 * 17 16 15 19 19 C 1.37887 * 119.99934 * 59.93361 * 17 16 15 20 20 N 1.31511 * 120.00092 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99810 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46985 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46978 * 119.99904 * 21 19 17 24 24 H 1.48502 * 109.46988 * 239.99929 * 21 19 17 25 25 C 1.53043 * 109.54383 * 61.23518 * 16 15 14 26 26 C 1.46928 * 120.63672 * 185.29748 * 13 11 10 27 27 H 1.09003 * 109.46991 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47465 * 300.00104 * 1 2 3 29 29 H 1.08999 * 109.47394 * 60.00367 * 1 2 3 30 30 H 1.08994 * 109.47465 * 239.99896 * 2 1 3 31 31 H 1.09000 * 109.46686 * 119.99393 * 2 1 3 32 32 H 1.07994 * 120.00191 * 0.02562 * 5 4 3 33 33 H 1.08005 * 119.90756 * 180.27566 * 6 5 4 34 34 H 1.07996 * 119.91570 * 179.97438 * 7 6 5 35 35 H 1.07999 * 120.00894 * 180.02562 * 8 7 6 36 36 H 0.96994 * 120.00064 * 145.38413 * 10 9 8 37 37 H 1.08997 * 109.58468 * 353.42112 * 14 13 11 38 38 H 1.09007 * 109.58621 * 113.84223 * 14 13 11 39 39 H 1.08999 * 109.56783 * 185.55253 * 15 14 13 40 40 H 1.09001 * 109.38268 * 65.51400 * 15 14 13 41 41 H 1.09005 * 109.45710 * 301.21439 * 16 15 14 42 42 H 0.96994 * 120.00347 * 179.97438 * 20 19 17 43 43 H 1.08992 * 109.49610 * 178.68603 * 25 16 15 44 44 H 1.08999 * 109.52023 * 58.60307 * 25 16 15 45 45 H 1.09001 * 109.58404 * 246.16140 * 26 13 11 46 46 H 1.08998 * 109.58028 * 6.43632 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1998 0.4280 0.0016 6 6 5.5703 0.6109 0.0027 7 6 6.1012 1.8876 0.0033 8 6 5.2644 2.9875 0.0022 9 6 3.8885 2.8119 0.0011 10 7 3.0379 3.9260 0.0006 11 6 3.3919 5.0443 0.6642 12 8 4.4845 5.1175 1.1927 13 7 2.5348 6.0815 0.7421 14 6 1.1721 5.9685 0.2044 15 6 0.9221 7.1228 -0.7644 16 6 1.2120 8.4497 -0.0591 17 6 0.9364 9.5909 -1.0039 18 1 1.7282 10.2759 -1.2690 19 6 -0.3268 9.7607 -1.5300 20 7 -1.2912 8.9270 -1.2069 21 14 -0.6683 11.1749 -2.7018 22 1 0.5747 11.9621 -2.9029 23 1 -1.1290 10.6362 -4.0066 24 1 -1.7217 12.0500 -2.1277 25 6 2.6793 8.4895 0.3740 26 6 2.9473 7.3488 1.3608 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.7885 -0.5705 0.0016 33 1 6.2279 -0.2459 -0.0010 34 1 7.1723 2.0255 0.0045 35 1 5.6817 3.9836 0.0022 36 1 2.1945 3.8920 -0.4772 37 1 1.0648 5.0208 -0.3231 38 1 0.4517 6.0181 1.0211 39 1 -0.1170 7.1050 -1.0932 40 1 1.5789 7.0189 -1.6280 41 1 0.5717 8.5420 0.8183 42 1 -2.1799 9.0466 -1.5766 43 1 2.8908 9.4442 0.8554 44 1 3.3203 8.3727 -0.4998 45 1 2.3747 7.5131 2.2736 46 1 4.0104 7.3104 1.5982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542900338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:59 Heat of formation + Delta-G solvation = -54.722673 kcal Electronic energy + Delta-G solvation = -27008.807059 eV Core-core repulsion = 23284.088475 eV Total energy + Delta-G solvation = -3724.718584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00986 -40.79068 -38.91774 -38.09299 -35.89450 -35.32428 -33.09982 -32.64277 -31.75534 -30.97819 -29.85465 -27.92373 -25.28155 -24.80584 -24.07738 -23.16166 -22.75830 -21.58919 -20.43940 -19.71848 -18.92132 -18.31184 -18.03838 -17.11044 -16.84235 -16.72167 -16.44996 -16.09673 -15.61898 -15.29031 -15.01144 -14.89778 -14.72648 -14.42792 -14.37520 -14.12913 -13.99597 -13.36810 -13.29956 -13.18274 -12.99537 -12.85701 -12.78468 -12.55495 -12.43689 -12.16631 -12.07545 -11.93587 -11.62257 -11.48393 -11.43087 -11.05801 -11.01008 -10.79024 -10.40655 -9.70892 -9.48514 -8.76959 -8.07887 -6.20802 0.32858 0.45982 1.40274 1.43713 1.53565 1.56384 2.01220 2.22352 2.44325 2.78000 2.86196 3.18745 3.88240 3.98457 4.04701 4.09964 4.16010 4.24741 4.27656 4.33064 4.40780 4.42985 4.50291 4.54753 4.58511 4.65322 4.74909 4.86272 4.95061 4.96665 4.96933 5.10347 5.19517 5.22333 5.28034 5.34071 5.41500 5.47957 5.54419 5.62341 5.65647 5.89320 5.93763 5.99153 6.11611 6.39156 6.47436 6.79820 6.88709 7.41281 7.46905 8.95737 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.003204 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.288378 B = 8738.183699 C = 9843.183092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.335 6.335 4 C 0.094 3.906 5 C -0.189 4.189 6 C -0.093 4.093 7 C -0.143 4.143 8 C -0.106 4.106 9 C 0.109 3.891 10 N -0.674 5.674 11 C 0.704 3.296 12 O -0.614 6.614 13 N -0.616 5.616 14 C 0.121 3.879 15 C -0.114 4.114 16 C 0.046 3.954 17 C -0.533 4.533 18 H 0.048 0.952 19 C 0.017 3.983 20 N -0.911 5.911 21 Si 0.949 3.051 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.113 4.113 26 C 0.135 3.865 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.145 0.855 35 H 0.123 0.877 36 H 0.413 0.587 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.027 0.973 41 H 0.005 0.995 42 H 0.261 0.739 43 H 0.068 0.932 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.955 -21.434 1.920 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.250 6.250 4 C 0.046 3.954 5 C -0.208 4.208 6 C -0.111 4.111 7 C -0.161 4.161 8 C -0.127 4.127 9 C 0.014 3.986 10 N -0.324 5.324 11 C 0.406 3.594 12 O -0.495 6.495 13 N -0.351 5.351 14 C -0.002 4.002 15 C -0.152 4.152 16 C 0.028 3.972 17 C -0.571 4.571 18 H 0.066 0.934 19 C -0.182 4.182 20 N -0.551 5.551 21 Si 0.775 3.225 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.152 4.152 26 C 0.013 3.987 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.163 0.837 35 H 0.141 0.859 36 H 0.253 0.747 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.046 0.954 41 H 0.024 0.976 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.309 -21.201 2.286 22.541 hybrid contribution -0.912 1.092 -0.910 1.689 sum 6.397 -20.108 1.377 21.146 Atomic orbital electron populations 1.21818 0.92029 1.04139 1.02901 1.23062 0.96451 0.80523 1.02563 1.86043 1.18251 1.31725 1.89008 1.18863 0.83508 0.92407 1.00611 1.21390 0.94251 0.97909 1.07262 1.21318 0.94540 0.97707 0.97552 1.21248 1.00614 0.91859 1.02399 1.21230 0.91097 1.00816 0.99550 1.17215 0.90193 0.83767 1.07473 1.42544 1.24158 1.11879 1.53835 1.15909 0.83782 0.80490 0.79228 1.90814 1.22690 1.82125 1.53884 1.47434 1.13305 1.12725 1.61671 1.21694 0.81688 0.99314 0.97479 1.21716 1.02460 0.94579 0.96483 1.18595 0.91121 0.92971 0.94535 1.21567 0.95449 1.12301 1.27757 0.93419 1.25635 0.96179 0.98394 0.97945 1.69946 1.02134 1.37744 1.45287 0.85647 0.77973 0.79867 0.78989 1.19681 1.20680 1.20671 1.21877 0.98373 0.97084 0.97843 1.21532 1.00774 0.81151 0.95263 0.87914 0.92466 0.92132 0.90467 0.90878 0.82319 0.82246 0.83724 0.85881 0.74736 0.90006 0.91341 0.90043 0.95413 0.97645 0.92939 0.91364 0.93960 0.91138 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.05 0.71 5.46 71.98 0.39 1.10 16 3 O -0.34 -7.92 9.70 -93.39 -0.91 -8.82 16 4 C 0.09 2.36 6.70 22.59 0.15 2.51 16 5 C -0.19 -3.54 9.04 22.35 0.20 -3.33 16 6 C -0.09 -1.62 10.04 22.28 0.22 -1.39 16 7 C -0.14 -3.15 10.04 22.27 0.22 -2.93 16 8 C -0.11 -3.18 8.70 22.37 0.19 -2.98 16 9 C 0.11 3.32 6.33 38.17 0.24 3.56 16 10 N -0.67 -22.09 5.09 -316.80 -1.61 -23.70 16 11 C 0.70 26.57 8.15 179.06 1.46 28.03 16 12 O -0.61 -25.81 13.19 -4.01 -0.05 -25.87 16 13 N -0.62 -22.93 2.98 -837.73 -2.50 -25.43 16 14 C 0.12 4.39 6.40 86.22 0.55 4.94 16 15 C -0.11 -5.08 5.14 30.53 0.16 -4.92 16 16 C 0.05 2.23 2.07 -11.51 -0.02 2.21 16 17 C -0.53 -28.73 8.56 25.60 0.22 -28.52 16 18 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 19 C 0.02 0.93 5.30 84.66 0.45 1.38 16 20 N -0.91 -50.25 11.31 21.45 0.24 -50.00 16 21 Si 0.95 42.89 29.54 68.60 2.03 44.91 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 C -0.11 -4.69 5.30 30.67 0.16 -4.53 16 26 C 0.14 5.02 6.42 86.36 0.55 5.58 16 27 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 31 H 0.07 0.88 7.66 -2.39 -0.02 0.87 16 32 H 0.16 1.91 6.30 -2.91 -0.02 1.89 16 33 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.12 4.26 6.19 -2.91 -0.02 4.24 16 36 H 0.41 12.44 6.05 -92.71 -0.56 11.88 16 37 H 0.08 2.56 5.57 -2.39 -0.01 2.55 16 38 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 39 H 0.08 4.06 6.03 -2.39 -0.01 4.04 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 42 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 43 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.08 3.07 7.03 -2.39 -0.02 3.05 16 Total: -1.00 -65.64 364.99 3.53 -62.11 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.43 Total: 27.30 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 5.90 Total: -0.51 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -3.87 Total: -99.13 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.96 Total: -34.69 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -65.64 3.53 -62.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542900338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.389 kcal (2) G-P(sol) polarization free energy of solvation -65.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds