Wall clock time and date at job start Tue Mar 31 2020 12:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47058 * 2 1 4 4 C 1.35430 * 117.00052 * 180.02562 * 3 2 1 5 5 N 1.32238 * 119.79950 * 359.97438 * 4 3 2 6 6 C 1.31874 * 121.80232 * 180.02562 * 5 4 3 7 7 C 1.38355 * 121.18564 * 359.97438 * 6 5 4 8 8 C 1.38337 * 119.45909 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.83103 * 179.97438 * 8 7 6 10 10 C 1.39987 * 118.34653 * 0.02571 * 8 7 6 11 11 C 1.47531 * 120.59646 * 179.97438 * 10 8 7 12 12 O 1.21590 * 120.00308 * 269.97656 * 11 10 8 13 13 N 1.34773 * 119.99702 * 89.97925 * 11 10 8 14 14 C 1.46923 * 120.63297 * 359.72026 * 13 11 10 15 15 C 1.52764 * 109.00910 * 233.58540 * 14 13 11 16 16 C 1.53045 * 109.38351 * 305.58615 * 15 14 13 17 17 C 1.50700 * 109.44867 * 181.25337 * 16 15 14 18 18 H 1.08004 * 119.99932 * 239.93711 * 17 16 15 19 19 C 1.37867 * 120.00073 * 59.94225 * 17 16 15 20 20 N 1.31519 * 119.99972 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99919 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47282 * 90.00187 * 21 19 17 23 23 H 1.48507 * 109.47160 * 209.99656 * 21 19 17 24 24 H 1.48496 * 109.47413 * 329.99689 * 21 19 17 25 25 C 1.53043 * 109.53524 * 61.24005 * 16 15 14 26 26 C 1.46934 * 120.63112 * 180.02562 * 13 11 10 27 27 H 1.09006 * 109.47335 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47190 * 300.00030 * 1 2 3 29 29 H 1.09000 * 109.47313 * 60.00047 * 1 2 3 30 30 H 1.09007 * 109.47190 * 239.99969 * 2 1 3 31 31 H 1.09000 * 109.47313 * 119.99953 * 2 1 3 32 32 H 1.07996 * 119.41015 * 180.02562 * 6 5 4 33 33 H 1.07998 * 120.27395 * 179.75034 * 7 6 5 34 34 H 1.08999 * 109.46783 * 90.00029 * 9 8 7 35 35 H 1.08999 * 109.47626 * 210.00638 * 9 8 7 36 36 H 1.09001 * 109.46804 * 330.00833 * 9 8 7 37 37 H 1.09001 * 109.58552 * 353.41673 * 14 13 11 38 38 H 1.09002 * 109.58489 * 113.84552 * 14 13 11 39 39 H 1.08997 * 109.56919 * 185.55293 * 15 14 13 40 40 H 1.08993 * 109.36303 * 65.49482 * 15 14 13 41 41 H 1.09002 * 109.46107 * 301.22560 * 16 15 14 42 42 H 0.96999 * 119.99724 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.49648 * 178.68480 * 25 16 15 44 44 H 1.08995 * 109.52476 * 58.60460 * 25 16 15 45 45 H 1.09000 * 109.58353 * 246.15772 * 26 13 11 46 46 H 1.09003 * 109.58223 * 6.43402 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0005 6 6 5.4634 0.6002 -0.0005 7 6 6.0625 1.8474 -0.0011 8 6 5.2713 2.9822 -0.0011 9 6 5.8912 4.3558 -0.0011 10 6 3.8805 2.8228 0.0000 11 6 2.9900 3.9990 0.0006 12 8 2.6234 4.4836 1.0538 13 7 2.5826 4.5364 -1.1663 14 6 3.0219 3.9658 -2.4470 15 6 3.6414 5.0726 -3.2985 16 6 2.6461 6.2273 -3.4329 17 6 3.2437 7.3068 -4.2981 18 1 3.3870 8.3005 -3.8999 19 6 3.6076 7.0259 -5.5979 20 7 3.4335 5.8158 -6.0826 21 14 4.3478 8.3642 -6.6705 22 1 5.8250 8.3598 -6.5187 23 1 3.9955 8.1116 -8.0909 24 1 3.8113 9.6851 -6.2549 25 6 2.3345 6.7983 -2.0476 26 6 1.6962 5.7080 -1.1820 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 6.0818 -0.2851 -0.0009 33 1 7.1389 1.9343 0.0030 34 1 6.0406 4.6869 -1.0288 35 1 5.2295 5.0531 0.5128 36 1 6.8519 4.3209 0.5126 37 1 3.7637 3.1880 -2.2653 38 1 2.1654 3.5416 -2.9710 39 1 3.8807 4.6817 -4.2874 40 1 4.5518 5.4311 -2.8184 41 1 1.7264 5.8627 -3.8905 42 1 3.6898 5.6181 -6.9970 43 1 1.6437 7.6357 -2.1461 44 1 3.2570 7.1410 -1.5789 45 1 0.7292 5.4290 -1.6005 46 1 1.5614 6.0778 -0.1655 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568586396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:41 Heat of formation + Delta-G solvation = -68.799777 kcal Electronic energy + Delta-G solvation = -27936.998137 eV Core-core repulsion = 24211.669124 eV Total energy + Delta-G solvation = -3725.329013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17464 -40.66231 -39.20548 -38.41398 -35.37982 -34.93498 -33.39767 -32.80670 -31.84796 -30.99008 -29.14621 -28.05942 -25.76299 -24.57979 -24.35730 -23.87044 -22.68540 -21.64447 -20.12862 -19.13552 -18.76896 -18.25582 -18.00650 -17.48471 -17.15930 -16.49366 -16.12331 -15.77884 -15.28054 -15.17685 -15.02822 -14.88102 -14.54417 -14.45653 -14.21002 -14.04916 -13.83052 -13.62601 -13.43349 -13.34935 -13.20727 -13.14885 -12.90476 -12.79403 -12.51391 -12.46712 -12.16754 -11.98504 -11.76269 -11.51518 -11.35375 -11.02995 -10.88992 -10.68519 -10.50641 -10.37692 -9.63967 -9.55466 -8.07157 -6.20621 -0.12841 0.17426 1.42206 1.43060 1.45145 1.53729 1.91002 1.99020 2.45097 2.62660 3.18078 3.19782 3.51130 3.67452 3.85067 4.01916 4.04123 4.08711 4.12582 4.20342 4.29377 4.39263 4.40748 4.44507 4.53737 4.56248 4.62468 4.64089 4.77587 4.80720 4.83552 4.89294 4.92506 5.02809 5.15796 5.17272 5.20889 5.23106 5.39606 5.44848 5.49492 5.64352 5.96888 6.10282 6.16232 6.35566 6.39430 6.72020 6.88890 7.02280 7.47535 8.96647 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.003977 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.268761 B = 7038.197917 C = 7431.589097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.324 6.324 4 C 0.340 3.660 5 N -0.551 5.551 6 C 0.157 3.843 7 C -0.201 4.201 8 C 0.017 3.983 9 C -0.122 4.122 10 C -0.223 4.223 11 C 0.580 3.420 12 O -0.582 6.582 13 N -0.589 5.589 14 C 0.126 3.874 15 C -0.108 4.108 16 C 0.047 3.953 17 C -0.532 4.532 18 H 0.050 0.950 19 C 0.019 3.981 20 N -0.913 5.913 21 Si 0.949 3.051 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.272 1.272 25 C -0.110 4.110 26 C 0.115 3.885 27 H 0.108 0.892 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.207 0.793 33 H 0.183 0.817 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.001 0.999 42 H 0.261 0.739 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.069 0.931 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.028 -13.144 10.798 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.232 6.232 4 C 0.161 3.839 5 N -0.276 5.276 6 C 0.002 3.998 7 C -0.221 4.221 8 C 0.009 3.991 9 C -0.178 4.178 10 C -0.228 4.228 11 C 0.368 3.632 12 O -0.464 6.464 13 N -0.319 5.319 14 C 0.004 3.996 15 C -0.147 4.147 16 C 0.028 3.972 17 C -0.570 4.570 18 H 0.069 0.931 19 C -0.180 4.180 20 N -0.553 5.553 21 Si 0.775 3.225 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.149 4.149 26 C -0.007 4.007 27 H 0.126 0.874 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.224 0.776 33 H 0.200 0.800 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.131 0.869 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.202 -13.615 11.157 17.892 hybrid contribution 0.404 1.438 -0.892 1.740 sum 3.606 -12.177 10.265 16.330 Atomic orbital electron populations 1.21851 0.91524 1.04414 1.02835 1.22862 0.96038 0.79468 1.02781 1.86235 1.16920 1.32986 1.87016 1.19717 0.84583 0.88607 0.90958 1.67469 1.07819 1.31302 1.20987 1.23339 0.88429 0.99124 0.88941 1.22224 1.03069 0.91152 1.05642 1.20480 0.89699 0.98612 0.90302 1.20960 1.02159 0.90924 1.03771 1.19719 0.95136 0.91733 1.16255 1.18110 0.79352 0.82660 0.83075 1.90698 1.59355 1.64176 1.32141 1.48176 1.47561 1.30262 1.05945 1.21627 0.98802 0.96389 0.82829 1.21689 0.98010 0.95822 0.99171 1.18599 0.94114 0.93456 0.91028 1.21512 1.41327 0.96813 0.97357 0.93146 1.25625 0.96081 0.97283 0.98966 1.69960 1.48716 1.20674 1.15944 0.85700 0.78816 0.79947 0.78035 1.20129 1.21051 1.19693 1.21836 0.99763 0.96933 0.96331 1.21671 0.92561 0.85488 1.00975 0.87356 0.92221 0.92334 0.91125 0.91084 0.77610 0.79988 0.89752 0.93158 0.86868 0.90730 0.92476 0.90200 0.94620 0.98095 0.92950 0.91382 0.93399 0.91279 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 10.28 71.98 0.74 -2.10 16 2 C 0.06 1.48 6.03 71.98 0.43 1.92 16 3 O -0.32 -10.53 9.57 -87.26 -0.84 -11.36 16 4 C 0.34 10.80 7.51 85.13 0.64 11.44 16 5 N -0.55 -14.31 9.21 -308.00 -2.84 -17.15 16 6 C 0.16 2.93 11.17 84.71 0.95 3.88 16 7 C -0.20 -3.77 9.79 22.32 0.22 -3.55 16 8 C 0.02 0.45 5.80 -19.42 -0.11 0.34 16 9 C -0.12 -3.02 9.69 71.24 0.69 -2.33 16 10 C -0.22 -7.44 3.66 -19.91 -0.07 -7.51 16 11 C 0.58 22.72 5.30 86.69 0.46 23.18 16 12 O -0.58 -26.06 16.52 -4.00 -0.07 -26.13 16 13 N -0.59 -22.82 2.98 -823.56 -2.45 -25.27 16 14 C 0.13 4.87 6.31 86.22 0.54 5.42 16 15 C -0.11 -4.86 5.14 30.53 0.16 -4.70 16 16 C 0.05 2.25 2.07 -11.51 -0.02 2.22 16 17 C -0.53 -28.32 8.56 25.60 0.22 -28.10 16 18 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 19 C 0.02 1.03 5.30 84.65 0.45 1.48 16 20 N -0.91 -50.26 11.30 21.44 0.24 -50.02 16 21 Si 0.95 42.25 29.54 68.60 2.03 44.27 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 C -0.11 -4.57 5.30 30.66 0.16 -4.41 16 26 C 0.12 4.40 6.43 86.35 0.56 4.96 16 27 H 0.11 1.37 8.14 -2.38 -0.02 1.36 16 28 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.58 8.10 -2.38 -0.02 1.56 16 31 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 32 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.51 7.19 -2.39 -0.02 1.49 16 36 H 0.11 1.94 8.10 -2.39 -0.02 1.92 16 37 H 0.07 2.69 6.22 -2.39 -0.01 2.67 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.08 4.02 6.03 -2.39 -0.01 4.00 16 40 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 43 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.08 3.12 7.00 -2.39 -0.02 3.11 16 Total: -1.00 -68.31 373.11 3.05 -65.26 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.97 Total: 18.26 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 6.01 Total: 2.14 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -5.05 Total: -92.44 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.90 Total: -37.49 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -68.31 3.05 -65.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568586396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.544 kcal (2) G-P(sol) polarization free energy of solvation -68.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds