Wall clock time and date at job start Tue Mar 31 2020 12:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47275 * 2 1 4 4 C 1.34767 * 116.99954 * 179.97438 * 3 2 1 5 5 O 1.21520 * 120.00359 * 0.02562 * 4 3 2 6 6 C 1.47288 * 119.99418 * 180.27726 * 4 3 2 7 7 C 1.40039 * 120.61695 * 354.28141 * 6 4 3 8 8 C 1.38301 * 118.36288 * 180.02562 * 7 6 4 9 9 C 1.38394 * 119.51645 * 359.97438 * 8 7 6 10 10 N 1.31839 * 121.23374 * 0.02562 * 9 8 7 11 11 C 1.32438 * 121.77610 * 359.69795 * 10 9 8 12 12 N 1.38229 * 119.82704 * 180.29225 * 11 10 9 13 13 C 1.46846 * 111.00227 * 69.05477 * 12 11 10 14 14 C 1.53038 * 109.52504 * 174.15768 * 13 12 11 15 15 C 1.53123 * 109.27502 * 59.17547 * 14 13 12 16 16 C 1.53005 * 109.51766 * 182.44340 * 15 14 13 17 17 C 1.50697 * 109.47044 * 294.68034 * 16 15 14 18 18 H 1.08003 * 120.00234 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00192 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00275 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47052 * 60.00187 * 21 19 17 23 23 H 1.48500 * 109.47190 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46988 * 299.99997 * 21 19 17 25 25 C 1.53117 * 109.16204 * 302.34600 * 15 14 13 26 26 C 1.46840 * 111.00286 * 304.83542 * 12 11 10 27 27 H 1.08997 * 109.47124 * 299.99623 * 1 2 3 28 28 H 1.09001 * 109.47161 * 60.00007 * 1 2 3 29 29 H 1.09003 * 109.46893 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47358 * 239.99995 * 2 1 3 31 31 H 1.09007 * 109.47394 * 120.00375 * 2 1 3 32 32 H 1.08002 * 120.81866 * 359.97047 * 7 6 4 33 33 H 1.08004 * 120.24312 * 180.02562 * 8 7 6 34 34 H 1.08004 * 119.38830 * 180.02562 * 9 8 7 35 35 H 1.08998 * 109.45954 * 294.17000 * 13 12 11 36 36 H 1.08996 * 109.46758 * 54.13719 * 13 12 11 37 37 H 1.09001 * 109.50261 * 299.23879 * 14 13 12 38 38 H 1.08996 * 109.50134 * 179.11828 * 14 13 12 39 39 H 1.08995 * 109.52647 * 62.25603 * 15 14 13 40 40 H 1.08993 * 109.47499 * 54.68365 * 16 15 14 41 41 H 1.09006 * 109.46934 * 174.68346 * 16 15 14 42 42 H 0.97000 * 120.00300 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.50358 * 297.71498 * 25 15 14 44 44 H 1.08995 * 109.50519 * 177.60104 * 25 15 14 45 45 H 1.09001 * 109.46512 * 305.86174 * 26 12 11 46 46 H 1.09003 * 109.45836 * 65.82801 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3501 1.5455 0.0005 5 8 4.0904 0.5818 0.0005 6 6 3.9130 2.9066 0.0067 7 6 3.0773 4.0245 -0.1080 8 6 3.6555 5.2808 -0.0974 9 6 5.0290 5.3982 0.0255 10 7 5.7993 4.3337 0.1324 11 6 5.2984 3.1076 0.1333 12 7 6.1430 2.0200 0.2538 13 6 6.7317 1.9571 1.5976 14 6 7.5423 0.6669 1.7410 15 6 8.6449 0.6421 0.6787 16 6 9.4205 -0.6731 0.7776 17 6 10.1467 -0.7299 2.0968 18 1 10.0631 0.0898 2.7950 19 6 10.9179 -1.8284 2.4124 20 7 11.0194 -2.8268 1.5624 21 14 11.8177 -1.8991 4.0480 22 1 10.8341 -1.8206 5.1578 23 1 12.5715 -3.1750 4.1435 24 1 12.7631 -0.7579 4.1427 25 6 8.0083 0.7576 -0.7091 26 6 7.1841 2.0450 -0.7814 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.0078 3.9084 -0.2033 33 1 3.0396 6.1638 -0.1835 34 1 5.4783 6.3804 0.0339 35 1 7.3860 2.8157 1.7480 36 1 5.9369 1.9713 2.3434 37 1 6.8859 -0.1924 1.6043 38 1 7.9919 0.6281 2.7331 39 1 9.3240 1.4794 0.8388 40 1 8.7262 -1.5105 0.7087 41 1 10.1421 -0.7315 -0.0373 42 1 11.5623 -3.5994 1.7843 43 1 7.3592 -0.1004 -0.8843 44 1 8.7908 0.7833 -1.4674 45 1 6.7179 2.1231 -1.7636 46 1 7.8364 2.9032 -0.6199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571637477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:00 Heat of formation + Delta-G solvation = -46.568409 kcal Electronic energy + Delta-G solvation = -27073.380626 eV Core-core repulsion = 23349.015637 eV Total energy + Delta-G solvation = -3724.364989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.11696 -39.78906 -38.25997 -36.43937 -34.60232 -33.05228 -32.37333 -31.68425 -30.36244 -30.34355 -27.53006 -25.22286 -24.43040 -23.35664 -22.63663 -22.38963 -21.19895 -20.64834 -18.83307 -18.06090 -17.40703 -16.95847 -16.57807 -16.22806 -16.11297 -15.12663 -14.98154 -14.46598 -14.14324 -14.12152 -13.67435 -13.62338 -13.39106 -13.27547 -12.98192 -12.81852 -12.71372 -12.29322 -12.05697 -11.92774 -11.74308 -11.60237 -11.09980 -10.84318 -10.61414 -10.58461 -10.56239 -10.41671 -10.28674 -10.17014 -9.93298 -9.89510 -9.46700 -9.18532 -8.98126 -8.80411 -8.27248 -8.22860 -5.90404 -3.91566 0.36396 0.90924 2.51784 2.59378 3.38518 3.42718 3.45192 3.53598 3.66399 4.24972 4.49244 4.53208 4.58118 4.73466 4.75312 4.82227 4.94862 5.09864 5.15072 5.39864 5.44481 5.47170 5.50704 5.56000 5.60063 5.68236 5.72002 5.77945 5.81340 5.94568 6.00201 6.12890 6.21889 6.29964 6.39391 6.56415 6.62444 6.76902 7.04682 7.21059 7.27596 7.30273 7.46299 7.64426 7.78651 7.88115 7.96660 8.11309 8.54093 9.14879 9.71319 11.20969 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003320 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.458673 B = 8431.743479 C = 9609.777980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.366 6.366 4 C 0.501 3.499 5 O -0.447 6.447 6 C -0.155 4.155 7 C -0.019 4.019 8 C -0.198 4.198 9 C 0.143 3.857 10 N -0.515 5.515 11 C 0.367 3.633 12 N -0.475 5.475 13 C 0.069 3.931 14 C -0.097 4.097 15 C -0.080 4.080 16 C 0.029 3.971 17 C -0.514 4.514 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.888 3.112 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.110 4.110 26 C 0.070 3.930 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.160 0.840 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.017 0.983 41 H 0.014 0.986 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.833 15.055 -4.994 26.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.285 6.285 4 C 0.341 3.659 5 O -0.331 6.331 6 C -0.160 4.160 7 C -0.045 4.045 8 C -0.218 4.218 9 C -0.016 4.016 10 N -0.228 5.228 11 C 0.138 3.862 12 N -0.198 5.198 13 C -0.057 4.057 14 C -0.135 4.135 15 C -0.099 4.099 16 C -0.008 4.008 17 C -0.552 4.552 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.716 3.284 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.148 4.148 26 C -0.056 4.056 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.177 0.823 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.875 14.174 -4.999 25.723 hybrid contribution 0.060 0.428 0.907 1.004 sum -20.815 14.602 -4.093 25.753 Atomic orbital electron populations 1.21799 0.92814 1.02952 1.03246 1.22988 0.94970 0.80050 1.02949 1.86497 1.24293 1.32472 1.85253 1.20595 0.80509 0.89596 0.75188 1.90998 1.59467 1.41118 1.41469 1.19904 0.93497 0.91747 1.10855 1.21889 1.00678 0.91173 0.90798 1.22093 0.96556 0.98275 1.04885 1.22919 0.90586 0.97409 0.90735 1.68141 1.40823 0.99169 1.14628 1.20091 0.90011 0.87833 0.88260 1.60014 1.21035 1.32990 1.05782 1.22201 0.97103 0.99776 0.86595 1.21549 0.96421 0.95090 1.00410 1.21234 0.95651 1.01081 0.91923 1.19101 0.94383 0.90658 0.96642 1.21231 1.28257 1.03082 1.02619 0.92764 1.25013 0.96841 0.95868 0.96754 1.69959 1.40463 1.07656 1.35545 0.86722 0.79922 0.77118 0.84602 1.20315 1.21408 1.20373 1.21691 0.98007 0.96164 0.98928 1.22085 0.91632 0.99157 0.92734 0.91602 0.91651 0.90240 0.91131 0.91036 0.83316 0.83983 0.82272 0.93972 0.92083 0.91405 0.90623 0.92884 0.96435 0.96744 0.93098 0.91253 0.91852 0.92084 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.29 37.16 0.38 -0.61 16 2 C 0.06 0.63 6.20 37.16 0.23 0.86 16 3 O -0.37 -4.29 9.56 -40.67 -0.39 -4.68 16 4 C 0.50 7.18 7.88 34.41 0.27 7.45 16 5 O -0.45 -7.92 14.88 -19.28 -0.29 -8.21 16 6 C -0.15 -2.04 5.91 -104.66 -0.62 -2.66 16 7 C -0.02 -0.18 9.73 -38.88 -0.38 -0.56 16 8 C -0.20 -1.53 10.08 -39.50 -0.40 -1.93 16 9 C 0.14 1.37 11.16 -17.49 -0.20 1.17 16 10 N -0.52 -7.03 9.69 -12.19 -0.12 -7.15 16 11 C 0.37 5.50 5.30 -155.19 -0.82 4.68 16 12 N -0.47 -8.11 2.60 -173.01 -0.45 -8.56 16 13 C 0.07 1.21 5.33 -3.83 -0.02 1.19 16 14 C -0.10 -1.97 5.15 -26.65 -0.14 -2.11 16 15 C -0.08 -1.73 2.20 -90.49 -0.20 -1.93 16 16 C 0.03 0.77 4.45 -27.88 -0.12 0.65 16 17 C -0.51 -14.69 8.45 -34.44 -0.29 -14.99 16 18 H 0.05 1.50 7.08 -52.48 -0.37 1.13 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 21 Si 0.89 22.12 29.54 -169.99 -5.02 17.09 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.11 -2.09 5.38 -26.65 -0.14 -2.23 16 26 C 0.07 1.19 5.18 -3.84 -0.02 1.17 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.15 1.03 7.71 -52.49 -0.40 0.63 16 33 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 34 H 0.16 1.02 8.06 -52.48 -0.42 0.59 16 35 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 36 H 0.06 1.03 8.10 -51.93 -0.42 0.60 16 37 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.08 1.59 7.05 -51.93 -0.37 1.23 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 46 H 0.05 0.78 7.92 -51.93 -0.41 0.37 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -33.68 377.09 -9.86 -43.54 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.45 Total: -2.58 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.56 Total: -8.30 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.17 Total: -42.53 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.68 Total: -12.89 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.68 -9.86 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571637477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.033 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds