Wall clock time and date at job start Tue Mar 31 2020 12:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47275 * 2 1 4 4 C 1.34767 * 116.99954 * 179.97438 * 3 2 1 5 5 O 1.21520 * 120.00359 * 0.02562 * 4 3 2 6 6 C 1.47288 * 119.99418 * 180.27726 * 4 3 2 7 7 C 1.40039 * 120.61695 * 354.28141 * 6 4 3 8 8 C 1.38301 * 118.36288 * 180.02562 * 7 6 4 9 9 C 1.38394 * 119.51645 * 359.97438 * 8 7 6 10 10 N 1.31839 * 121.23374 * 0.02562 * 9 8 7 11 11 C 1.32438 * 121.77610 * 359.69795 * 10 9 8 12 12 N 1.38229 * 119.82704 * 180.29225 * 11 10 9 13 13 C 1.46846 * 111.00227 * 69.05477 * 12 11 10 14 14 C 1.53038 * 109.52504 * 174.15768 * 13 12 11 15 15 C 1.53123 * 109.27502 * 59.17547 * 14 13 12 16 16 C 1.53005 * 109.51766 * 182.44340 * 15 14 13 17 17 C 1.50697 * 109.47044 * 294.68034 * 16 15 14 18 18 H 1.08003 * 120.00234 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00192 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00275 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47052 * 60.00187 * 21 19 17 23 23 H 1.48500 * 109.47190 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46988 * 299.99997 * 21 19 17 25 25 C 1.53117 * 109.16204 * 302.34600 * 15 14 13 26 26 C 1.46840 * 111.00286 * 304.83542 * 12 11 10 27 27 H 1.08997 * 109.47124 * 299.99623 * 1 2 3 28 28 H 1.09001 * 109.47161 * 60.00007 * 1 2 3 29 29 H 1.09003 * 109.46893 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47358 * 239.99995 * 2 1 3 31 31 H 1.09007 * 109.47394 * 120.00375 * 2 1 3 32 32 H 1.08002 * 120.81866 * 359.97047 * 7 6 4 33 33 H 1.08004 * 120.24312 * 180.02562 * 8 7 6 34 34 H 1.08004 * 119.38830 * 180.02562 * 9 8 7 35 35 H 1.08998 * 109.45954 * 294.17000 * 13 12 11 36 36 H 1.08996 * 109.46758 * 54.13719 * 13 12 11 37 37 H 1.09001 * 109.50261 * 299.23879 * 14 13 12 38 38 H 1.08996 * 109.50134 * 179.11828 * 14 13 12 39 39 H 1.08995 * 109.52647 * 62.25603 * 15 14 13 40 40 H 1.08993 * 109.47499 * 54.68365 * 16 15 14 41 41 H 1.09006 * 109.46934 * 174.68346 * 16 15 14 42 42 H 0.97000 * 120.00300 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.50358 * 297.71498 * 25 15 14 44 44 H 1.08995 * 109.50519 * 177.60104 * 25 15 14 45 45 H 1.09001 * 109.46512 * 305.86174 * 26 12 11 46 46 H 1.09003 * 109.45836 * 65.82801 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3501 1.5455 0.0005 5 8 4.0904 0.5818 0.0005 6 6 3.9130 2.9066 0.0067 7 6 3.0773 4.0245 -0.1080 8 6 3.6555 5.2808 -0.0974 9 6 5.0290 5.3982 0.0255 10 7 5.7993 4.3337 0.1324 11 6 5.2984 3.1076 0.1333 12 7 6.1430 2.0200 0.2538 13 6 6.7317 1.9571 1.5976 14 6 7.5423 0.6669 1.7410 15 6 8.6449 0.6421 0.6787 16 6 9.4205 -0.6731 0.7776 17 6 10.1467 -0.7299 2.0968 18 1 10.0631 0.0898 2.7950 19 6 10.9179 -1.8284 2.4124 20 7 11.0194 -2.8268 1.5624 21 14 11.8177 -1.8991 4.0480 22 1 10.8341 -1.8206 5.1578 23 1 12.5715 -3.1750 4.1435 24 1 12.7631 -0.7579 4.1427 25 6 8.0083 0.7576 -0.7091 26 6 7.1841 2.0450 -0.7814 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.0078 3.9084 -0.2033 33 1 3.0396 6.1638 -0.1835 34 1 5.4783 6.3804 0.0339 35 1 7.3860 2.8157 1.7480 36 1 5.9369 1.9713 2.3434 37 1 6.8859 -0.1924 1.6043 38 1 7.9919 0.6281 2.7331 39 1 9.3240 1.4794 0.8388 40 1 8.7262 -1.5105 0.7087 41 1 10.1421 -0.7315 -0.0373 42 1 11.5623 -3.5994 1.7843 43 1 7.3592 -0.1004 -0.8843 44 1 8.7908 0.7833 -1.4674 45 1 6.7179 2.1231 -1.7636 46 1 7.8364 2.9032 -0.6199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571637477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:59 Heat of formation + Delta-G solvation = -65.305632 kcal Electronic energy + Delta-G solvation = -27074.193133 eV Core-core repulsion = 23349.015637 eV Total energy + Delta-G solvation = -3725.177496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.11047 -40.83035 -39.56650 -37.49434 -36.23885 -34.38533 -33.88689 -32.41630 -31.87469 -31.56374 -29.30120 -26.32970 -25.88922 -24.35842 -24.11031 -23.55914 -22.31295 -22.08739 -20.49722 -19.00836 -18.52439 -18.34955 -17.93408 -17.52892 -17.09579 -16.57294 -16.22317 -15.91740 -15.25266 -15.10786 -15.07329 -14.96199 -14.81892 -14.34951 -14.22074 -13.98953 -13.66222 -13.57881 -13.44905 -13.29288 -13.00875 -12.84114 -12.72967 -12.51689 -12.46553 -12.26405 -12.12973 -11.77067 -11.50755 -11.47028 -11.32769 -11.03620 -11.00159 -10.88701 -10.67773 -10.52139 -10.06436 -9.47912 -8.16736 -6.26791 -0.51529 0.12262 1.38794 1.42432 1.49962 1.57660 1.63542 2.41968 2.53445 2.68886 3.15897 3.41533 3.68545 3.83431 3.88585 3.95880 3.98981 4.03587 4.07824 4.12734 4.24080 4.29046 4.38175 4.44741 4.46786 4.51208 4.68225 4.76474 4.80077 4.87223 4.95694 4.95962 4.98822 5.05656 5.09793 5.16644 5.33112 5.33660 5.39765 5.44784 5.48577 5.54829 5.78033 5.87290 5.89949 6.26366 6.31197 6.78638 6.85862 6.88574 7.41247 8.95304 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003320 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.458673 B = 8431.743479 C = 9609.777980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 O -0.357 6.357 4 C 0.501 3.499 5 O -0.495 6.495 6 C -0.174 4.174 7 C -0.012 4.012 8 C -0.171 4.171 9 C 0.138 3.862 10 N -0.541 5.541 11 C 0.337 3.663 12 N -0.487 5.487 13 C 0.084 3.916 14 C -0.088 4.088 15 C -0.071 4.071 16 C 0.037 3.963 17 C -0.531 4.531 18 H 0.061 0.939 19 C -0.003 4.003 20 N -0.936 5.936 21 Si 0.963 3.037 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.266 1.266 25 C -0.103 4.103 26 C 0.083 3.917 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.176 0.824 33 H 0.190 0.810 34 H 0.194 0.806 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.054 0.946 40 H -0.015 1.015 41 H -0.012 1.012 42 H 0.262 0.738 43 H 0.050 0.950 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.876 18.390 -4.384 30.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.018 4.018 3 O -0.275 6.275 4 C 0.344 3.656 5 O -0.382 6.382 6 C -0.179 4.179 7 C -0.038 4.038 8 C -0.190 4.190 9 C -0.020 4.020 10 N -0.254 5.254 11 C 0.109 3.891 12 N -0.211 5.211 13 C -0.042 4.042 14 C -0.126 4.126 15 C -0.089 4.089 16 C 0.000 4.000 17 C -0.569 4.569 18 H 0.080 0.920 19 C -0.200 4.200 20 N -0.577 5.577 21 Si 0.787 3.213 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.191 1.191 25 C -0.141 4.141 26 C -0.044 4.044 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.194 0.806 33 H 0.207 0.793 34 H 0.211 0.789 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.003 0.997 41 H 0.007 0.993 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.957 17.544 -4.395 29.225 hybrid contribution 0.581 -0.528 0.658 1.024 sum -22.376 17.016 -3.737 28.358 Atomic orbital electron populations 1.21798 0.89794 1.04296 1.03967 1.23232 0.97242 0.79179 1.02113 1.86498 1.22911 1.33454 1.84618 1.20991 0.80913 0.89865 0.73822 1.90979 1.60566 1.42684 1.43973 1.19970 0.93326 0.92209 1.12383 1.22251 1.01597 0.90526 0.89400 1.22586 0.96125 0.99080 1.01209 1.23608 0.91593 0.97519 0.89298 1.68052 1.42224 0.99442 1.15689 1.19951 0.90126 0.87838 0.91195 1.59840 1.20828 1.35501 1.04893 1.21930 0.96819 0.97624 0.87862 1.21370 0.95879 0.96150 0.99195 1.21056 0.95656 0.98066 0.94148 1.18967 0.93467 0.92244 0.95350 1.21615 1.28438 1.03482 1.03355 0.92049 1.25983 0.97751 0.95347 1.00908 1.70111 1.41358 1.08370 1.37839 0.85540 0.78712 0.77498 0.79545 1.19226 1.20928 1.19103 1.21569 0.98093 0.97059 0.97362 1.21888 0.91590 0.97317 0.93561 0.90969 0.90738 0.88604 0.91866 0.92190 0.80614 0.79270 0.78912 0.93774 0.91487 0.93692 0.91750 0.92773 0.99709 0.99319 0.92925 0.93131 0.91233 0.91117 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 10.29 71.98 0.74 -0.88 16 2 C 0.06 1.10 6.20 71.98 0.45 1.55 16 3 O -0.36 -8.11 9.56 -56.78 -0.54 -8.65 16 4 C 0.50 14.49 7.88 70.20 0.55 15.04 16 5 O -0.50 -18.47 14.88 19.77 0.29 -18.18 16 6 C -0.17 -4.36 5.91 -19.89 -0.12 -4.48 16 7 C -0.01 -0.18 9.73 22.72 0.22 0.04 16 8 C -0.17 -1.76 10.08 22.32 0.23 -1.54 16 9 C 0.14 2.10 11.16 84.73 0.95 3.05 16 10 N -0.54 -13.72 9.69 -192.48 -1.87 -15.58 16 11 C 0.34 9.86 5.30 133.67 0.71 10.57 16 12 N -0.49 -17.01 2.60 -701.29 -1.82 -18.83 16 13 C 0.08 3.02 5.33 86.33 0.46 3.48 16 14 C -0.09 -3.76 5.15 30.65 0.16 -3.61 16 15 C -0.07 -3.21 2.20 -10.71 -0.02 -3.23 16 16 C 0.04 2.07 4.45 29.85 0.13 2.21 16 17 C -0.53 -31.39 8.45 25.60 0.22 -31.18 16 18 H 0.06 3.47 7.08 -2.91 -0.02 3.44 16 19 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 20 N -0.94 -59.45 13.29 21.45 0.28 -59.16 16 21 Si 0.96 45.94 29.54 68.60 2.03 47.97 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 C -0.10 -4.11 5.38 30.64 0.16 -3.95 16 26 C 0.08 2.86 5.18 86.33 0.45 3.31 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.18 1.64 7.71 -2.91 -0.02 1.62 16 33 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16 34 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.04 1.56 8.13 -2.39 -0.02 1.54 16 36 H 0.07 2.30 8.10 -2.39 -0.02 2.28 16 37 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.06 2.83 7.05 -2.39 -0.02 2.82 16 39 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 42 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 43 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.07 2.29 8.10 -2.39 -0.02 2.27 16 46 H 0.05 1.63 7.92 -2.39 -0.02 1.61 16 Total: -1.00 -77.80 377.09 5.07 -72.74 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.95 Total: 9.03 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 5.74 Total: -9.33 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -3.40 Total: -93.58 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.25 Total: -26.83 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -77.80 5.07 -72.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571637477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.431 kcal (2) G-P(sol) polarization free energy of solvation -77.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds