Wall clock time and date at job start Tue Mar 31 2020 12:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21328 * 119.99764 * 2 1 4 4 C 1.46616 * 120.00311 * 180.02562 * 2 1 3 5 5 C 1.41570 * 126.52009 * 179.97438 * 4 2 1 6 6 C 1.36242 * 106.98263 * 179.75240 * 5 4 2 7 7 C 1.46841 * 125.80122 * 180.25039 * 6 5 4 8 8 O 1.21673 * 119.99696 * 207.23038 * 7 6 5 9 9 N 1.34770 * 120.00026 * 27.23168 * 7 6 5 10 10 C 1.46932 * 120.63215 * 6.92678 * 9 7 6 11 11 C 1.52751 * 109.01016 * 233.58386 * 10 9 7 12 12 C 1.53042 * 109.38671 * 305.58661 * 11 10 9 13 13 C 1.52999 * 109.46067 * 181.26007 * 12 11 10 14 14 C 1.50699 * 109.47269 * 64.93379 * 13 12 11 15 15 H 1.07999 * 119.99695 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99893 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00247 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99669 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47405 * 60.00168 * 18 16 14 20 20 H 1.48501 * 109.46975 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47501 * 300.00130 * 18 16 14 22 22 C 1.53041 * 109.53346 * 61.24170 * 12 11 10 23 23 C 1.46927 * 120.63180 * 187.20962 * 9 7 6 24 24 N 1.37846 * 108.39475 * 0.42610 * 6 5 4 25 25 C 1.46494 * 125.34293 * 179.82400 * 24 6 5 26 26 C 1.34104 * 109.30642 * 359.56193 * 24 6 5 27 27 H 1.08998 * 109.46767 * 269.99407 * 1 2 3 28 28 H 1.09001 * 109.47478 * 29.99285 * 1 2 3 29 29 H 1.08997 * 109.47343 * 149.99693 * 1 2 3 30 30 H 1.07997 * 126.50474 * 359.97438 * 5 4 2 31 31 H 1.08995 * 109.58360 * 353.42084 * 10 9 7 32 32 H 1.09004 * 109.58313 * 113.84034 * 10 9 7 33 33 H 1.09003 * 109.56654 * 185.54940 * 11 10 9 34 34 H 1.09005 * 109.36158 * 65.50083 * 11 10 9 35 35 H 1.09002 * 109.46196 * 301.22194 * 12 11 10 36 36 H 1.09002 * 109.46754 * 184.93557 * 13 12 11 37 37 H 1.09003 * 109.46979 * 304.93237 * 13 12 11 38 38 H 0.97005 * 120.00065 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.49892 * 178.68635 * 22 12 11 40 40 H 1.08993 * 109.50282 * 58.58924 * 22 12 11 41 41 H 1.09005 * 109.58718 * 246.15911 * 23 9 7 42 42 H 1.08997 * 109.58512 * 6.43473 * 23 9 7 43 43 H 1.08998 * 109.47667 * 275.05981 * 25 24 6 44 44 H 1.09008 * 109.47289 * 35.05562 * 25 24 6 45 45 H 1.08997 * 109.46891 * 155.05595 * 25 24 6 46 46 H 1.08007 * 125.82541 * 180.26656 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0508 0.0000 4 6 2.2401 -1.2697 -0.0006 5 6 3.6467 -1.4304 -0.0011 6 6 3.8942 -2.7701 0.0041 7 6 5.2213 -3.3985 0.0107 8 8 5.3719 -4.5072 -0.4673 9 7 6.2726 -2.7471 0.5462 10 6 6.0817 -1.4775 1.2608 11 6 7.0066 -0.4225 0.6567 12 6 8.4463 -0.9414 0.6701 13 6 9.3783 0.1265 0.0942 14 6 9.3792 1.3327 0.9975 15 1 8.7750 1.3374 1.8927 16 6 10.1513 2.4304 0.6812 17 7 10.8874 2.4245 -0.4086 18 14 10.1518 3.9258 1.8006 19 1 10.6244 3.5322 3.1523 20 1 11.0575 4.9617 1.2423 21 1 8.7743 4.4720 1.8976 22 6 8.5404 -2.2116 -0.1783 23 6 7.6323 -3.2898 0.4213 24 7 2.6869 -3.4355 -0.0019 25 6 2.5216 -4.8911 -0.0027 26 6 1.6877 -2.5411 -0.0011 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8899 -0.5139 30 1 4.3835 -0.6408 -0.0016 31 1 5.0458 -1.1540 1.1604 32 1 6.3243 -1.6116 2.3150 33 1 6.9450 0.4950 1.2418 34 1 6.7022 -0.2206 -0.3704 35 1 8.7416 -1.1665 1.6949 36 1 10.3894 -0.2743 0.0222 37 1 9.0307 0.4156 -0.8977 38 1 11.4309 3.1966 -0.6309 39 1 9.5706 -2.5676 -0.1874 40 1 8.2216 -1.9929 -1.1974 41 1 8.0039 -3.5747 1.4056 42 1 7.6185 -4.1631 -0.2308 43 1 2.5757 -5.2624 -1.0260 44 1 3.3136 -5.3471 0.5916 45 1 1.5526 -5.1468 0.4260 46 1 0.6326 -2.7720 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577850773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:11 Heat of formation + Delta-G solvation = -23.703332 kcal Electronic energy + Delta-G solvation = -27027.179826 eV Core-core repulsion = 23303.806341 eV Total energy + Delta-G solvation = -3723.373485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.95523 -39.65158 -38.76481 -37.29826 -34.24926 -33.23574 -32.21975 -31.47163 -30.54198 -28.96550 -27.94771 -27.04082 -24.87511 -23.08897 -22.78595 -22.45601 -20.97098 -20.28758 -19.03643 -18.36496 -17.46517 -16.53913 -16.25336 -15.89133 -15.62283 -15.18429 -15.01976 -14.76873 -14.61519 -14.49907 -14.38145 -13.77636 -13.53739 -13.21437 -13.02304 -12.87164 -12.69844 -12.56894 -12.48261 -12.38967 -12.17622 -11.81365 -11.68111 -11.14457 -10.98561 -10.74667 -10.66486 -10.43435 -10.12389 -10.01221 -9.77114 -9.62407 -9.28945 -8.99468 -8.93139 -8.60154 -8.31432 -8.30668 -5.96189 -3.98165 1.18900 1.44703 2.28320 2.95708 3.18176 3.25533 3.36516 3.41086 3.43409 4.09694 4.38547 4.42576 4.49286 4.60151 4.86649 4.92391 4.98044 5.16235 5.20337 5.21496 5.27830 5.37439 5.39107 5.48009 5.52768 5.54025 5.67401 5.70987 5.83100 5.96889 6.00768 6.08450 6.29404 6.38355 6.42155 6.52550 6.55628 6.66761 6.78639 6.97658 7.01950 7.13290 7.47947 7.61414 7.69540 7.84208 8.03165 8.13698 8.45490 9.07959 9.65732 11.15062 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.003703 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.461826 B = 7559.586109 C = 9475.621882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.419 3.581 3 O -0.464 6.464 4 C -0.265 4.265 5 C -0.089 4.089 6 C -0.050 4.050 7 C 0.586 3.414 8 O -0.557 6.557 9 N -0.588 5.588 10 C 0.071 3.929 11 C -0.120 4.120 12 C -0.080 4.080 13 C 0.028 3.972 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.130 4.130 23 C 0.116 3.884 24 N -0.399 5.399 25 C 0.069 3.931 26 C 0.073 3.927 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.170 0.830 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.697 -14.110 2.197 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.298 3.702 3 O -0.339 6.339 4 C -0.273 4.273 5 C -0.113 4.113 6 C -0.161 4.161 7 C 0.374 3.626 8 O -0.437 6.437 9 N -0.319 5.319 10 C -0.051 4.051 11 C -0.158 4.158 12 C -0.099 4.099 13 C -0.009 4.009 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.168 4.168 23 C -0.006 4.006 24 N -0.071 5.071 25 C -0.072 4.072 26 C -0.069 4.069 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.187 0.813 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -21.121 -14.432 1.855 25.648 hybrid contribution 0.056 0.825 0.544 0.989 sum -21.065 -13.607 2.399 25.192 Atomic orbital electron populations 1.22184 0.94243 1.04447 1.04357 1.21533 0.90847 0.86758 0.71086 1.90602 1.72064 1.33956 1.37298 1.20315 0.94300 0.93685 1.19005 1.21694 0.95564 0.94231 0.99797 1.19836 0.86406 0.91576 1.18308 1.16991 0.82887 0.84528 0.78183 1.90768 1.85276 1.19504 1.48155 1.47850 1.06698 1.23847 1.53536 1.22664 1.03063 0.83359 0.95975 1.21836 0.94893 0.97662 1.01452 1.21194 0.95359 0.94659 0.98674 1.19117 0.93597 0.92015 0.96158 1.21197 1.26066 0.99931 1.08315 0.92619 1.25008 0.95556 0.98601 0.95214 1.69953 1.28462 1.30412 1.24698 0.86713 0.77981 0.82716 0.80934 1.20336 1.21392 1.20155 1.22049 0.98782 0.95883 1.00115 1.21724 0.80090 0.97373 1.01419 1.43617 1.05005 1.07359 1.51073 1.22259 1.03999 0.76084 1.04823 1.22536 0.93729 0.87877 1.02710 0.88807 0.89645 0.90153 0.81292 0.87661 0.91470 0.89389 0.92147 0.92304 0.96619 0.96589 0.93014 0.90926 0.91976 0.91526 0.89629 0.89679 0.88876 0.89408 0.80135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.26 10.02 36.00 0.36 -0.90 16 2 C 0.42 4.77 7.24 -30.93 -0.22 4.55 16 3 O -0.46 -7.40 17.67 5.52 0.10 -7.30 16 4 C -0.27 -2.99 6.12 -105.11 -0.64 -3.64 16 5 C -0.09 -1.20 8.30 -39.03 -0.32 -1.53 16 6 C -0.05 -0.67 6.42 -82.40 -0.53 -1.20 16 7 C 0.59 8.99 7.42 -12.78 -0.09 8.90 16 8 O -0.56 -9.50 15.01 5.21 0.08 -9.42 16 9 N -0.59 -8.90 2.98 -174.51 -0.52 -9.42 16 10 C 0.07 1.04 5.75 -3.93 -0.02 1.02 16 11 C -0.12 -2.15 4.94 -26.84 -0.13 -2.28 16 12 C -0.08 -1.57 2.10 -90.58 -0.19 -1.76 16 13 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 14 C -0.52 -14.21 8.39 -34.44 -0.29 -14.50 16 15 H 0.06 1.47 7.05 -52.49 -0.37 1.10 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 18 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.13 -2.20 5.36 -26.61 -0.14 -2.34 16 23 C 0.12 1.73 6.41 -3.71 -0.02 1.70 16 24 N -0.40 -4.02 3.12 -120.05 -0.37 -4.39 16 25 C 0.07 0.49 10.24 59.84 0.61 1.11 16 26 C 0.07 0.60 10.72 -16.42 -0.18 0.42 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.31 7.19 -51.93 -0.37 -0.06 16 30 H 0.17 2.47 5.80 -52.49 -0.30 2.17 16 31 H 0.11 1.45 3.21 -51.93 -0.17 1.28 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.68 6.91 -51.93 -0.36 1.32 16 34 H 0.06 1.13 8.12 -51.93 -0.42 0.70 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.28 7.05 -51.93 -0.37 0.92 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.80 7.33 -51.92 -0.38 0.42 16 45 H 0.09 0.30 8.11 -51.93 -0.42 -0.12 16 46 H 0.18 0.63 7.49 -52.48 -0.39 0.24 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -34.93 370.26 -8.38 -43.31 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.92 Total: -0.48 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -2.04 Total: -8.33 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: -0.16 Total: -40.03 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.18 Total: -16.72 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.93 -8.38 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577850773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.610 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds