Wall clock time and date at job start Tue Mar 31 2020 12:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21328 * 119.99764 * 2 1 4 4 C 1.46616 * 120.00311 * 180.02562 * 2 1 3 5 5 C 1.41570 * 126.52009 * 179.97438 * 4 2 1 6 6 C 1.36242 * 106.98263 * 179.75240 * 5 4 2 7 7 C 1.46841 * 125.80122 * 180.25039 * 6 5 4 8 8 O 1.21673 * 119.99696 * 207.23038 * 7 6 5 9 9 N 1.34770 * 120.00026 * 27.23168 * 7 6 5 10 10 C 1.46932 * 120.63215 * 6.92678 * 9 7 6 11 11 C 1.52751 * 109.01016 * 233.58386 * 10 9 7 12 12 C 1.53042 * 109.38671 * 305.58661 * 11 10 9 13 13 C 1.52999 * 109.46067 * 181.26007 * 12 11 10 14 14 C 1.50699 * 109.47269 * 64.93379 * 13 12 11 15 15 H 1.07999 * 119.99695 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99893 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00247 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99669 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47405 * 60.00168 * 18 16 14 20 20 H 1.48501 * 109.46975 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47501 * 300.00130 * 18 16 14 22 22 C 1.53041 * 109.53346 * 61.24170 * 12 11 10 23 23 C 1.46927 * 120.63180 * 187.20962 * 9 7 6 24 24 N 1.37846 * 108.39475 * 0.42610 * 6 5 4 25 25 C 1.46494 * 125.34293 * 179.82400 * 24 6 5 26 26 C 1.34104 * 109.30642 * 359.56193 * 24 6 5 27 27 H 1.08998 * 109.46767 * 269.99407 * 1 2 3 28 28 H 1.09001 * 109.47478 * 29.99285 * 1 2 3 29 29 H 1.08997 * 109.47343 * 149.99693 * 1 2 3 30 30 H 1.07997 * 126.50474 * 359.97438 * 5 4 2 31 31 H 1.08995 * 109.58360 * 353.42084 * 10 9 7 32 32 H 1.09004 * 109.58313 * 113.84034 * 10 9 7 33 33 H 1.09003 * 109.56654 * 185.54940 * 11 10 9 34 34 H 1.09005 * 109.36158 * 65.50083 * 11 10 9 35 35 H 1.09002 * 109.46196 * 301.22194 * 12 11 10 36 36 H 1.09002 * 109.46754 * 184.93557 * 13 12 11 37 37 H 1.09003 * 109.46979 * 304.93237 * 13 12 11 38 38 H 0.97005 * 120.00065 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.49892 * 178.68635 * 22 12 11 40 40 H 1.08993 * 109.50282 * 58.58924 * 22 12 11 41 41 H 1.09005 * 109.58718 * 246.15911 * 23 9 7 42 42 H 1.08997 * 109.58512 * 6.43473 * 23 9 7 43 43 H 1.08998 * 109.47667 * 275.05981 * 25 24 6 44 44 H 1.09008 * 109.47289 * 35.05562 * 25 24 6 45 45 H 1.08997 * 109.46891 * 155.05595 * 25 24 6 46 46 H 1.08007 * 125.82541 * 180.26656 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0508 0.0000 4 6 2.2401 -1.2697 -0.0006 5 6 3.6467 -1.4304 -0.0011 6 6 3.8942 -2.7701 0.0041 7 6 5.2213 -3.3985 0.0107 8 8 5.3719 -4.5072 -0.4673 9 7 6.2726 -2.7471 0.5462 10 6 6.0817 -1.4775 1.2608 11 6 7.0066 -0.4225 0.6567 12 6 8.4463 -0.9414 0.6701 13 6 9.3783 0.1265 0.0942 14 6 9.3792 1.3327 0.9975 15 1 8.7750 1.3374 1.8927 16 6 10.1513 2.4304 0.6812 17 7 10.8874 2.4245 -0.4086 18 14 10.1518 3.9258 1.8006 19 1 10.6244 3.5322 3.1523 20 1 11.0575 4.9617 1.2423 21 1 8.7743 4.4720 1.8976 22 6 8.5404 -2.2116 -0.1783 23 6 7.6323 -3.2898 0.4213 24 7 2.6869 -3.4355 -0.0019 25 6 2.5216 -4.8911 -0.0027 26 6 1.6877 -2.5411 -0.0011 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8899 -0.5139 30 1 4.3835 -0.6408 -0.0016 31 1 5.0458 -1.1540 1.1604 32 1 6.3243 -1.6116 2.3150 33 1 6.9450 0.4950 1.2418 34 1 6.7022 -0.2206 -0.3704 35 1 8.7416 -1.1665 1.6949 36 1 10.3894 -0.2743 0.0222 37 1 9.0307 0.4156 -0.8977 38 1 11.4309 3.1966 -0.6309 39 1 9.5706 -2.5676 -0.1874 40 1 8.2216 -1.9929 -1.1974 41 1 8.0039 -3.5747 1.4056 42 1 7.6185 -4.1631 -0.2308 43 1 2.5757 -5.2624 -1.0260 44 1 3.3136 -5.3471 0.5916 45 1 1.5526 -5.1468 0.4260 46 1 0.6326 -2.7720 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577850773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:10 Heat of formation + Delta-G solvation = -45.259132 kcal Electronic energy + Delta-G solvation = -27028.114555 eV Core-core repulsion = 23303.806341 eV Total energy + Delta-G solvation = -3724.308214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.83830 -40.83906 -39.70936 -38.67748 -35.85238 -34.40187 -33.78721 -32.67783 -31.49810 -30.14413 -29.40765 -27.71314 -26.53339 -24.35063 -24.24415 -23.41905 -22.34143 -21.42554 -20.34100 -19.37320 -18.48440 -18.36684 -17.62468 -16.79442 -16.63307 -16.52097 -16.08475 -15.94736 -15.58504 -15.52013 -15.48823 -15.28477 -14.80522 -14.64311 -14.47734 -13.99729 -13.92522 -13.52272 -13.42230 -13.17624 -13.00971 -12.98455 -12.90116 -12.82279 -12.70987 -12.49713 -12.34078 -12.10980 -11.79417 -11.42294 -11.25785 -10.98660 -10.88851 -10.66096 -10.52481 -9.87636 -9.78627 -9.31760 -8.17088 -6.26529 0.39847 0.46168 1.40232 1.43203 1.44942 1.50300 1.96730 2.15993 2.31517 2.42289 3.16562 3.26816 3.51172 3.78643 3.86575 3.99400 4.03940 4.05747 4.14638 4.20931 4.34285 4.36015 4.40032 4.50043 4.60981 4.62064 4.70191 4.73766 4.79015 4.82353 4.85082 4.91716 4.98895 5.07360 5.23453 5.28584 5.33335 5.37166 5.47203 5.52322 5.55764 5.66556 5.79259 5.87957 6.10398 6.26156 6.29758 6.82102 6.89650 6.95411 7.42106 8.94758 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.003703 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.461826 B = 7559.586109 C = 9475.621882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.417 3.583 3 O -0.528 6.528 4 C -0.297 4.297 5 C -0.105 4.105 6 C -0.077 4.077 7 C 0.584 3.416 8 O -0.578 6.578 9 N -0.593 5.593 10 C 0.084 3.916 11 C -0.113 4.113 12 C -0.072 4.072 13 C 0.033 3.967 14 C -0.529 4.529 15 H 0.065 0.935 16 C -0.002 4.002 17 N -0.937 5.937 18 Si 0.959 3.041 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.269 1.269 22 C -0.122 4.122 23 C 0.123 3.877 24 N -0.399 5.399 25 C 0.065 3.935 26 C 0.122 3.878 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.066 0.934 36 H -0.010 1.010 37 H -0.017 1.017 38 H 0.261 0.739 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.136 0.864 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.366 -15.737 3.836 30.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.300 3.700 3 O -0.409 6.409 4 C -0.304 4.304 5 C -0.130 4.130 6 C -0.187 4.187 7 C 0.374 3.626 8 O -0.460 6.460 9 N -0.324 5.324 10 C -0.037 4.037 11 C -0.151 4.151 12 C -0.090 4.090 13 C -0.004 4.004 14 C -0.567 4.567 15 H 0.083 0.917 16 C -0.199 4.199 17 N -0.577 5.577 18 Si 0.783 3.217 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.194 1.194 22 C -0.161 4.161 23 C 0.001 3.999 24 N -0.069 5.069 25 C -0.074 4.074 26 C -0.021 4.021 27 H 0.134 0.866 28 H 0.100 0.900 29 H 0.135 0.865 30 H 0.162 0.838 31 H 0.134 0.866 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.008 0.992 37 H 0.001 0.999 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.154 0.846 46 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -24.802 -16.099 3.505 29.775 hybrid contribution 1.160 1.275 -0.036 1.724 sum -23.642 -14.823 3.469 28.120 Atomic orbital electron populations 1.22210 0.89819 1.06115 1.06162 1.22351 0.93187 0.85726 0.68697 1.90586 1.73701 1.35891 1.40721 1.20514 0.93367 0.95435 1.21054 1.21618 0.96909 0.93950 1.00535 1.19516 0.86830 0.91633 1.20761 1.17294 0.83670 0.84262 0.77396 1.90743 1.85777 1.20462 1.48999 1.47894 1.06912 1.23837 1.53772 1.22527 1.02777 0.82198 0.96208 1.21683 0.94668 0.98296 1.00465 1.21034 0.94948 0.94127 0.98922 1.19006 0.93396 0.93335 0.94619 1.21637 1.25676 1.00677 1.08717 0.91683 1.25946 0.95230 1.02012 0.96733 1.70100 1.29530 1.31427 1.26687 0.85595 0.78207 0.78656 0.79195 1.18937 1.21212 1.19389 1.21932 0.99907 0.95402 0.98822 1.21650 0.79702 0.96249 1.02301 1.43904 1.04106 1.08781 1.50155 1.22505 1.05976 0.73965 1.04993 1.23381 0.95551 0.85827 0.97336 0.86608 0.90040 0.86454 0.83814 0.86570 0.89899 0.90872 0.93974 0.91604 0.99177 0.99895 0.93013 0.90290 0.93609 0.89536 0.89403 0.89670 0.90700 0.84571 0.74095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 10.02 71.24 0.71 -1.00 16 2 C 0.42 8.99 7.24 27.87 0.20 9.19 16 3 O -0.53 -17.50 17.67 -3.18 -0.06 -17.56 16 4 C -0.30 -6.15 6.12 -20.18 -0.12 -6.27 16 5 C -0.11 -2.88 8.30 22.63 0.19 -2.69 16 6 C -0.08 -1.99 6.42 39.98 0.26 -1.73 16 7 C 0.58 17.82 7.42 86.50 0.64 18.46 16 8 O -0.58 -19.52 15.01 -4.26 -0.06 -19.58 16 9 N -0.59 -17.98 2.98 -824.27 -2.45 -20.43 16 10 C 0.08 2.50 5.75 86.21 0.50 3.00 16 11 C -0.11 -4.23 4.94 30.53 0.15 -4.08 16 12 C -0.07 -2.91 2.10 -10.77 -0.02 -2.93 16 13 C 0.03 1.78 4.45 29.85 0.13 1.91 16 14 C -0.53 -29.99 8.39 25.60 0.21 -29.77 16 15 H 0.07 3.49 7.05 -2.91 -0.02 3.47 16 16 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 17 N -0.94 -58.39 13.29 21.45 0.28 -58.11 16 18 Si 0.96 45.19 29.54 68.60 2.03 47.21 16 19 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 C -0.12 -4.27 5.36 30.67 0.16 -4.11 16 23 C 0.12 3.63 6.41 86.36 0.55 4.18 16 24 N -0.40 -6.74 3.12 -533.72 -1.67 -8.41 16 25 C 0.07 0.69 10.24 127.77 1.31 2.00 16 26 C 0.12 1.42 10.72 84.44 0.90 2.32 16 27 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.12 0.20 7.19 -2.39 -0.02 0.18 16 30 H 0.14 4.55 5.80 -2.91 -0.02 4.53 16 31 H 0.12 3.30 3.21 -2.39 -0.01 3.29 16 32 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.07 2.93 6.91 -2.39 -0.02 2.92 16 34 H 0.04 1.70 8.12 -2.38 -0.02 1.68 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 36 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 38 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 39 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 41 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.09 2.60 7.05 -2.39 -0.02 2.59 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 44 H 0.07 1.12 7.33 -2.38 -0.02 1.10 16 45 H 0.14 0.12 8.11 -2.39 -0.02 0.10 16 46 H 0.24 -0.29 7.49 -2.91 -0.02 -0.31 16 Total: -1.00 -82.48 370.26 5.30 -77.19 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.98 Total: 10.86 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 6.24 Total: -11.17 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -3.84 Total: -86.95 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.12 Total: -37.14 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -82.48 5.30 -77.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577850773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.926 kcal (2) G-P(sol) polarization free energy of solvation -82.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds