Wall clock time and date at job start Tue Mar 31 2020 13:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 111.00191 * 2 1 4 4 C 1.50701 * 109.46832 * 66.04057 * 3 2 1 5 5 H 1.07994 * 120.00164 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99744 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00088 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99858 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47561 * 59.99852 * 8 6 4 10 10 H 1.48504 * 109.47076 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47252 * 299.99779 * 8 6 4 12 12 C 1.46901 * 111.00189 * 236.04662 * 2 1 3 13 13 C 1.52997 * 109.46973 * 293.95284 * 12 2 1 14 14 H 1.09004 * 109.46854 * 60.00132 * 13 12 2 15 15 O 1.42904 * 109.47580 * 300.00458 * 13 12 2 16 16 C 1.52997 * 109.47466 * 179.97438 * 13 12 2 17 17 N 1.46893 * 109.47714 * 185.00297 * 16 13 12 18 18 C 1.46901 * 111.00460 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47171 * 179.97438 * 18 17 16 20 20 C 1.33994 * 124.91879 * 90.00170 * 19 18 17 21 21 C 1.46789 * 106.17988 * 179.97438 * 20 19 18 22 22 C 1.39409 * 134.36828 * 179.97438 * 21 20 19 23 23 C 1.36736 * 119.71638 * 180.02562 * 22 21 20 24 24 C 1.38735 * 120.41717 * 359.97438 * 23 22 21 25 25 C 1.37850 * 120.68831 * 0.23154 * 24 23 22 26 26 C 1.38943 * 119.81349 * 359.54882 * 25 24 23 27 27 O 1.34443 * 124.92144 * 269.97231 * 19 18 17 28 28 H 1.08994 * 109.47197 * 183.94854 * 1 2 3 29 29 H 1.08997 * 109.47132 * 303.95871 * 1 2 3 30 30 H 1.09002 * 109.46752 * 63.95105 * 1 2 3 31 31 H 1.08990 * 109.47144 * 186.04156 * 3 2 1 32 32 H 1.09000 * 109.46746 * 306.04808 * 3 2 1 33 33 H 0.97006 * 120.00425 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.46783 * 173.95789 * 12 2 1 35 35 H 1.09000 * 109.47062 * 53.95224 * 12 2 1 36 36 H 0.96701 * 113.99055 * 300.00142 * 15 13 12 37 37 H 1.08997 * 109.47295 * 64.99660 * 16 13 12 38 38 H 1.09005 * 109.46735 * 305.00720 * 16 13 12 39 39 H 1.00907 * 110.99773 * 56.04272 * 17 16 13 40 40 H 1.08996 * 109.47127 * 59.99663 * 18 17 16 41 41 H 1.08998 * 109.46549 * 300.00200 * 18 17 16 42 42 H 1.08001 * 126.91304 * 359.97438 * 20 19 18 43 43 H 1.08003 * 120.13861 * 359.97438 * 22 21 20 44 44 H 1.08004 * 119.79068 * 179.97438 * 23 22 21 45 45 H 1.08003 * 119.65834 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.09813 * 179.72197 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5113 2.0487 6 6 2.0267 3.3495 1.5285 7 7 2.7111 4.0022 0.6146 8 14 1.5828 4.1869 3.1381 9 1 2.1754 3.4298 4.2699 10 1 2.1139 5.5737 3.1376 11 1 0.1057 4.2231 3.2864 12 6 1.9955 -0.7660 -1.1376 13 6 1.6315 -2.2426 -0.9703 14 1 0.5472 -2.3474 -0.9323 15 8 2.2008 -2.7392 0.2427 16 6 2.1793 -3.0403 -2.1554 17 7 1.7288 -4.4350 -2.0570 18 6 2.2373 -5.2331 -3.1806 19 6 1.7562 -6.6548 -3.0454 20 6 0.6136 -7.1300 -3.5593 21 6 0.5554 -8.5482 -3.1850 22 6 -0.3569 -9.5785 -3.4077 23 6 -0.1064 -10.8257 -2.9063 24 6 1.0490 -11.0713 -2.1787 25 6 1.9605 -10.0639 -1.9447 26 6 1.7274 -8.7905 -2.4493 27 8 2.4114 -7.6302 -2.3921 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4513 -0.9233 31 1 3.0797 1.3444 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 2.9851 4.9186 0.7763 34 1 3.0798 -0.6611 -1.1755 35 1 1.5611 -0.3872 -2.0628 36 1 3.1652 -2.6771 0.2787 37 1 3.2687 -3.0086 -2.1423 38 1 1.8144 -2.6053 -3.0859 39 1 0.7226 -4.4870 -2.0023 40 1 3.3272 -5.2165 -3.1742 41 1 1.8732 -4.8134 -4.1184 42 1 -0.1175 -6.5802 -4.1335 43 1 -1.2580 -9.3922 -3.9732 44 1 -0.8126 -11.6248 -3.0778 45 1 1.2343 -12.0609 -1.7880 46 1 2.8546 -10.2646 -1.3733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580879985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:21 Heat of formation + Delta-G solvation = -11.187863 kcal Electronic energy + Delta-G solvation = -25181.283137 eV Core-core repulsion = 21458.452364 eV Total energy + Delta-G solvation = -3722.830773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.72064 -38.43713 -38.13349 -36.24635 -35.09746 -33.06609 -32.50685 -30.91965 -30.71045 -29.18051 -27.20267 -26.55690 -25.01158 -23.39940 -23.01195 -22.10678 -21.45937 -21.11323 -20.15156 -17.65411 -17.46904 -16.61096 -16.45486 -16.27095 -15.91115 -15.50188 -15.08964 -14.81540 -14.64619 -14.44731 -14.30209 -14.03130 -13.66599 -13.48752 -13.37890 -13.18392 -12.61011 -12.53796 -12.41501 -12.07996 -11.91336 -11.85142 -11.33921 -11.23833 -11.12525 -10.88228 -10.75517 -10.66245 -10.45555 -10.30192 -9.97855 -9.58778 -9.12506 -8.94103 -8.74944 -8.43450 -8.42623 -7.19778 -6.02024 -4.02987 0.57147 1.05117 1.99072 2.39547 3.35126 3.38567 3.40087 3.42419 3.81977 4.10502 4.33970 4.43415 4.59265 4.65772 4.75906 4.77867 4.84110 4.88822 4.93206 5.11032 5.12904 5.17181 5.28549 5.34369 5.38781 5.50950 5.53589 5.58178 5.65790 5.88134 5.92936 6.04360 6.10079 6.10686 6.18835 6.28234 6.34390 6.38587 6.61309 6.76789 6.89782 7.05070 7.27068 7.32488 7.80866 8.05116 8.15205 8.21325 8.55939 9.04787 9.61157 11.08862 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.001772 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.276368 B =15798.518592 C =15956.171504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.024 3.976 13 C 0.117 3.883 14 H 0.092 0.908 15 O -0.535 6.535 16 C 0.027 3.973 17 N -0.675 5.675 18 C 0.129 3.871 19 C 0.052 3.948 20 C -0.208 4.208 21 C -0.129 4.129 22 C -0.073 4.073 23 C -0.138 4.138 24 C -0.097 4.097 25 C -0.106 4.106 26 C 0.054 3.946 27 O -0.183 6.183 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.007 0.993 31 H 0.028 0.972 32 H -0.011 1.011 33 H 0.261 0.739 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.369 0.631 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.346 0.654 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.157 0.843 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.134 0.866 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 -27.631 -12.112 30.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.106 4.106 13 C 0.057 3.943 14 H 0.110 0.890 15 O -0.338 6.338 16 C -0.103 4.103 17 N -0.307 5.307 18 C 0.000 4.000 19 C 0.004 3.996 20 C -0.228 4.228 21 C -0.130 4.130 22 C -0.091 4.091 23 C -0.156 4.156 24 C -0.115 4.115 25 C -0.124 4.124 26 C 0.006 3.994 27 O -0.084 6.084 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.026 0.974 31 H 0.047 0.953 32 H 0.007 0.993 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.216 0.784 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.165 0.835 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.174 0.826 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.152 0.848 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.918 -27.919 -11.007 30.152 hybrid contribution -0.579 1.465 -1.001 1.866 sum -3.496 -26.454 -12.008 29.261 Atomic orbital electron populations 1.22247 0.89015 0.99570 1.00356 1.62009 1.06816 1.17393 1.39044 1.19744 0.95280 0.81594 0.96615 1.21137 1.34790 0.96848 1.01698 0.91820 1.24994 0.95316 0.97350 0.97032 1.69947 1.38489 1.11461 1.34134 0.86539 0.78684 0.78250 0.83810 1.20100 1.21402 1.20310 1.22721 1.00616 0.93802 0.93420 1.21847 0.98191 0.90778 0.83500 0.89037 1.86602 1.24979 1.84893 1.37365 1.22790 1.01522 0.87315 0.98653 1.60341 1.17006 1.10623 1.42744 1.20475 1.01911 0.84083 0.93492 1.22179 0.92392 0.90294 0.94768 1.22257 0.99433 0.93257 1.07814 1.19944 0.96499 0.94467 1.02107 1.20295 0.98176 0.91558 0.99044 1.20778 0.98094 0.96935 0.99779 1.20931 0.93646 0.98476 0.98412 1.19984 1.01642 0.88275 1.02514 1.19664 0.92001 0.87275 1.00449 1.83997 1.45381 1.16266 1.62767 0.93483 0.90668 0.97429 0.95347 0.99336 0.92916 0.91087 0.95504 0.78434 0.90176 0.94174 0.83527 0.88744 0.91567 0.82584 0.85595 0.85392 0.84801 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.14 60.06 0.55 1.28 16 2 N -0.53 -11.41 4.62 -244.37 -1.13 -12.54 16 3 C 0.19 5.04 4.72 -4.97 -0.02 5.02 16 4 C -0.51 -14.39 8.46 -34.44 -0.29 -14.68 16 5 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.02 0.41 4.62 -3.82 -0.02 0.39 16 13 C 0.12 1.64 3.01 -26.73 -0.08 1.56 16 14 H 0.09 1.31 6.55 -51.93 -0.34 0.97 16 15 O -0.53 -8.56 13.15 -35.23 -0.46 -9.02 16 16 C 0.03 0.28 5.32 -3.83 -0.02 0.26 16 17 N -0.68 -7.05 6.44 -115.07 -0.74 -7.80 16 18 C 0.13 1.13 6.19 -4.98 -0.03 1.10 16 19 C 0.05 0.54 6.74 -35.80 -0.24 0.30 16 20 C -0.21 -2.01 11.01 -37.62 -0.41 -2.42 16 21 C -0.13 -1.37 6.40 -105.16 -0.67 -2.04 16 22 C -0.07 -0.61 10.05 -39.69 -0.40 -1.01 16 23 C -0.14 -0.99 9.98 -39.94 -0.40 -1.39 16 24 C -0.10 -0.70 10.01 -39.54 -0.40 -1.09 16 25 C -0.11 -0.95 10.07 -39.46 -0.40 -1.35 16 26 C 0.05 0.61 7.42 -38.47 -0.29 0.33 16 27 O -0.18 -2.27 10.58 3.91 0.04 -2.22 16 28 H 0.05 0.81 6.47 -51.93 -0.34 0.48 16 29 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 30 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.03 0.79 7.93 -51.93 -0.41 0.37 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 35 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.37 4.97 9.05 45.56 0.41 5.38 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.35 3.49 8.72 -39.29 -0.34 3.15 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 44 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 45 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 46 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -33.42 383.62 -10.37 -43.79 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.36 Total: 3.58 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -3.22 Total: -12.30 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -1.13 Total: -46.44 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.42 Total: -11.25 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.42 -10.37 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580879985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.605 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds