Wall clock time and date at job start Tue Mar 31 2020 13:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 111.00191 * 2 1 4 4 C 1.50701 * 109.46832 * 66.04057 * 3 2 1 5 5 H 1.07994 * 120.00164 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99744 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00088 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99858 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47561 * 59.99852 * 8 6 4 10 10 H 1.48504 * 109.47076 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47252 * 299.99779 * 8 6 4 12 12 C 1.46901 * 111.00189 * 236.04662 * 2 1 3 13 13 C 1.52997 * 109.46973 * 293.95284 * 12 2 1 14 14 H 1.09004 * 109.46854 * 60.00132 * 13 12 2 15 15 O 1.42904 * 109.47580 * 300.00458 * 13 12 2 16 16 C 1.52997 * 109.47466 * 179.97438 * 13 12 2 17 17 N 1.46893 * 109.47714 * 185.00297 * 16 13 12 18 18 C 1.46901 * 111.00460 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47171 * 179.97438 * 18 17 16 20 20 C 1.33994 * 124.91879 * 90.00170 * 19 18 17 21 21 C 1.46789 * 106.17988 * 179.97438 * 20 19 18 22 22 C 1.39409 * 134.36828 * 179.97438 * 21 20 19 23 23 C 1.36736 * 119.71638 * 180.02562 * 22 21 20 24 24 C 1.38735 * 120.41717 * 359.97438 * 23 22 21 25 25 C 1.37850 * 120.68831 * 0.23154 * 24 23 22 26 26 C 1.38943 * 119.81349 * 359.54882 * 25 24 23 27 27 O 1.34443 * 124.92144 * 269.97231 * 19 18 17 28 28 H 1.08994 * 109.47197 * 183.94854 * 1 2 3 29 29 H 1.08997 * 109.47132 * 303.95871 * 1 2 3 30 30 H 1.09002 * 109.46752 * 63.95105 * 1 2 3 31 31 H 1.08990 * 109.47144 * 186.04156 * 3 2 1 32 32 H 1.09000 * 109.46746 * 306.04808 * 3 2 1 33 33 H 0.97006 * 120.00425 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.46783 * 173.95789 * 12 2 1 35 35 H 1.09000 * 109.47062 * 53.95224 * 12 2 1 36 36 H 0.96701 * 113.99055 * 300.00142 * 15 13 12 37 37 H 1.08997 * 109.47295 * 64.99660 * 16 13 12 38 38 H 1.09005 * 109.46735 * 305.00720 * 16 13 12 39 39 H 1.00907 * 110.99773 * 56.04272 * 17 16 13 40 40 H 1.08996 * 109.47127 * 59.99663 * 18 17 16 41 41 H 1.08998 * 109.46549 * 300.00200 * 18 17 16 42 42 H 1.08001 * 126.91304 * 359.97438 * 20 19 18 43 43 H 1.08003 * 120.13861 * 359.97438 * 22 21 20 44 44 H 1.08004 * 119.79068 * 179.97438 * 23 22 21 45 45 H 1.08003 * 119.65834 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.09813 * 179.72197 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5113 2.0487 6 6 2.0267 3.3495 1.5285 7 7 2.7111 4.0022 0.6146 8 14 1.5828 4.1869 3.1381 9 1 2.1754 3.4298 4.2699 10 1 2.1139 5.5737 3.1376 11 1 0.1057 4.2231 3.2864 12 6 1.9955 -0.7660 -1.1376 13 6 1.6315 -2.2426 -0.9703 14 1 0.5472 -2.3474 -0.9323 15 8 2.2008 -2.7392 0.2427 16 6 2.1793 -3.0403 -2.1554 17 7 1.7288 -4.4350 -2.0570 18 6 2.2373 -5.2331 -3.1806 19 6 1.7562 -6.6548 -3.0454 20 6 0.6136 -7.1300 -3.5593 21 6 0.5554 -8.5482 -3.1850 22 6 -0.3569 -9.5785 -3.4077 23 6 -0.1064 -10.8257 -2.9063 24 6 1.0490 -11.0713 -2.1787 25 6 1.9605 -10.0639 -1.9447 26 6 1.7274 -8.7905 -2.4493 27 8 2.4114 -7.6302 -2.3921 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4513 -0.9233 31 1 3.0797 1.3444 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 2.9851 4.9186 0.7763 34 1 3.0798 -0.6611 -1.1755 35 1 1.5611 -0.3872 -2.0628 36 1 3.1652 -2.6771 0.2787 37 1 3.2687 -3.0086 -2.1423 38 1 1.8144 -2.6053 -3.0859 39 1 0.7226 -4.4870 -2.0023 40 1 3.3272 -5.2165 -3.1742 41 1 1.8732 -4.8134 -4.1184 42 1 -0.1175 -6.5802 -4.1335 43 1 -1.2580 -9.3922 -3.9732 44 1 -0.8126 -11.6248 -3.0778 45 1 1.2343 -12.0609 -1.7880 46 1 2.8546 -10.2646 -1.3733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580879985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:20 Heat of formation + Delta-G solvation = -36.241533 kcal Electronic energy + Delta-G solvation = -25182.369545 eV Core-core repulsion = 21458.452364 eV Total energy + Delta-G solvation = -3723.917182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.42937 -39.59494 -38.84077 -37.52266 -36.30149 -34.60808 -33.78305 -31.84343 -31.34501 -30.33786 -28.99897 -27.73521 -26.33860 -24.68257 -23.76788 -22.81432 -22.66011 -21.99200 -21.66256 -18.56484 -18.32366 -18.22727 -17.33137 -17.25241 -17.00609 -16.72736 -16.38486 -15.93424 -15.89274 -15.67770 -15.19482 -14.97566 -14.91556 -14.65421 -14.31152 -14.05712 -13.91942 -13.76076 -13.27569 -13.18402 -13.02861 -12.98056 -12.76664 -12.60871 -12.53196 -12.51071 -12.37805 -11.99329 -11.84643 -11.62030 -11.40778 -11.14220 -10.68050 -10.61386 -9.61131 -9.48323 -9.11566 -8.94343 -8.20674 -6.30424 -0.07292 0.39834 1.29538 1.40937 1.44134 1.52100 1.72917 2.40269 2.77133 2.94386 3.11660 3.35130 3.49845 3.70902 3.75874 3.92189 4.05472 4.09357 4.14958 4.21420 4.25236 4.32322 4.37223 4.45418 4.51869 4.55046 4.57938 4.67442 4.72796 4.76728 4.78151 4.94431 5.07256 5.14945 5.18107 5.23981 5.31995 5.34529 5.47063 5.51314 5.64525 5.76305 5.84968 6.05680 6.19364 6.29895 6.33488 6.65068 6.85441 7.04616 7.39138 8.89869 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.001772 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.276368 B =15798.518592 C =15956.171504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.024 3.976 13 C 0.128 3.872 14 H 0.091 0.909 15 O -0.556 6.556 16 C 0.040 3.960 17 N -0.688 5.688 18 C 0.135 3.865 19 C 0.033 3.967 20 C -0.206 4.206 21 C -0.154 4.154 22 C -0.083 4.083 23 C -0.137 4.137 24 C -0.091 4.091 25 C -0.125 4.125 26 C 0.021 3.979 27 O -0.209 6.209 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.012 0.988 31 H 0.005 0.995 32 H -0.038 1.038 33 H 0.264 0.736 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.378 0.622 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.348 0.652 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.178 0.822 43 H 0.145 0.855 44 H 0.159 0.841 45 H 0.165 0.835 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.518 -29.318 -12.339 32.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.265 5.265 3 C 0.081 3.919 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.793 3.207 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.193 1.193 12 C -0.105 4.105 13 C 0.068 3.932 14 H 0.109 0.891 15 O -0.362 6.362 16 C -0.090 4.090 17 N -0.321 5.321 18 C 0.007 3.993 19 C -0.015 4.015 20 C -0.226 4.226 21 C -0.155 4.155 22 C -0.101 4.101 23 C -0.155 4.155 24 C -0.109 4.109 25 C -0.143 4.143 26 C -0.026 4.026 27 O -0.111 6.111 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.023 0.977 32 H -0.020 1.020 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.226 0.774 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.166 0.834 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.195 0.805 43 H 0.163 0.837 44 H 0.176 0.824 45 H 0.183 0.817 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.128 -29.632 -11.247 31.962 hybrid contribution -0.226 1.852 -0.970 2.103 sum -4.354 -27.780 -12.217 30.658 Atomic orbital electron populations 1.22213 0.87907 1.00990 0.99628 1.61910 1.07938 1.14858 1.41786 1.19395 0.93696 0.83929 0.94864 1.21450 1.34920 0.97501 1.02480 0.92193 1.25898 0.95026 0.98029 1.00684 1.70067 1.39334 1.11867 1.36135 0.85445 0.78797 0.77180 0.79247 1.19478 1.20691 1.19316 1.22831 1.00448 0.95165 0.92076 1.21753 0.98173 0.88972 0.84339 0.89145 1.86562 1.25988 1.84952 1.38673 1.22567 1.01701 0.87161 0.97545 1.60262 1.17248 1.10455 1.44132 1.20510 1.01879 0.83093 0.93842 1.22516 0.92936 0.90686 0.95377 1.22580 0.99451 0.93188 1.07356 1.20307 0.96984 0.95434 1.02772 1.20652 0.98507 0.91635 0.99270 1.21217 0.98415 0.97250 0.98577 1.21375 0.92932 0.99249 0.97340 1.20342 1.02778 0.88101 1.03066 1.20162 0.92825 0.87786 1.01858 1.83946 1.46439 1.17083 1.63646 0.90648 0.92834 0.96925 0.97705 1.02025 0.92679 0.91221 0.94637 0.77402 0.89611 0.92390 0.83356 0.88766 0.89104 0.80462 0.83679 0.82369 0.81739 0.84085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.14 127.69 1.17 2.77 16 2 N -0.54 -23.48 4.62 -927.06 -4.28 -27.76 16 3 C 0.21 11.16 4.72 85.56 0.40 11.56 16 4 C -0.53 -30.36 8.46 25.60 0.22 -30.14 16 5 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 6 C 0.00 0.09 5.46 84.66 0.46 0.56 16 7 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 8 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 C 0.02 0.80 4.62 86.30 0.40 1.20 16 13 C 0.13 3.40 3.01 30.59 0.09 3.49 16 14 H 0.09 2.43 6.55 -2.38 -0.02 2.42 16 15 O -0.56 -17.39 13.15 -148.98 -1.96 -19.35 16 16 C 0.04 0.77 5.32 86.30 0.46 1.23 16 17 N -0.69 -13.45 6.44 -517.96 -3.33 -16.78 16 18 C 0.13 2.19 6.19 85.56 0.53 2.72 16 19 C 0.03 0.67 6.74 24.72 0.17 0.84 16 20 C -0.21 -3.85 11.01 23.54 0.26 -3.59 16 21 C -0.15 -3.19 6.40 -20.21 -0.13 -3.32 16 22 C -0.08 -1.27 10.05 22.20 0.22 -1.05 16 23 C -0.14 -1.64 9.98 22.04 0.22 -1.42 16 24 C -0.09 -1.14 10.01 22.30 0.22 -0.91 16 25 C -0.12 -2.21 10.07 22.35 0.23 -1.98 16 26 C 0.02 0.48 7.42 22.99 0.17 0.65 16 27 O -0.21 -5.34 10.58 -8.93 -0.09 -5.44 16 28 H 0.07 2.51 6.47 -2.39 -0.02 2.49 16 29 H 0.05 2.31 6.76 -2.39 -0.02 2.29 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.00 0.28 7.93 -2.39 -0.02 0.26 16 32 H -0.04 -2.19 8.12 -2.39 -0.02 -2.21 16 33 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 34 H 0.07 2.31 7.93 -2.39 -0.02 2.29 16 35 H 0.04 1.13 8.12 -2.39 -0.02 1.11 16 36 H 0.38 10.01 9.05 -74.06 -0.67 9.35 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.35 6.52 8.72 -89.69 -0.78 5.74 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 45 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 46 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -73.49 383.62 -2.73 -76.22 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -0.46 Total: 19.73 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 5.09 Total: -17.39 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -7.33 Total: -100.72 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -2.05 Total: -24.79 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -73.49 -2.73 -76.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580879985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.982 kcal (2) G-P(sol) polarization free energy of solvation -73.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds