Wall clock time and date at job start Tue Mar 31 2020 12:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46743 * 110.99749 * 2 1 4 4 C 1.53420 * 108.60064 * 285.47512 * 3 2 1 5 5 O 1.43132 * 107.89361 * 296.72459 * 4 3 2 6 6 C 1.36245 * 116.67717 * 45.36451 * 5 4 3 7 7 C 1.38788 * 118.67216 * 165.38992 * 6 5 4 8 8 C 1.38106 * 120.29703 * 179.97438 * 7 6 5 9 9 C 1.38842 * 119.95668 * 359.51605 * 8 7 6 10 10 N 1.40101 * 120.01845 * 180.31970 * 9 8 7 11 11 C 1.34773 * 120.00108 * 144.89920 * 10 9 8 12 12 O 1.21289 * 120.00273 * 4.62446 * 11 10 9 13 13 C 1.50708 * 120.00223 * 184.61399 * 11 10 9 14 14 C 1.52999 * 109.47201 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46907 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46890 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47053 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00023 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00016 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00134 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99838 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47058 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46896 * 120.00365 * 21 19 17 24 24 H 1.48503 * 109.46949 * 240.00075 * 21 19 17 25 25 C 1.38627 * 119.96788 * 0.33814 * 9 8 7 26 26 C 1.38985 * 121.34287 * 344.99659 * 6 5 4 27 27 H 1.09006 * 109.46669 * 185.43049 * 1 2 3 28 28 H 1.09000 * 109.46853 * 305.42733 * 1 2 3 29 29 H 1.09000 * 109.47046 * 65.42898 * 1 2 3 30 30 H 1.09005 * 109.61610 * 45.21072 * 3 2 1 31 31 H 1.09005 * 109.61540 * 165.74270 * 3 2 1 32 32 H 1.08998 * 109.77781 * 56.32592 * 4 3 2 33 33 H 1.09004 * 109.77187 * 177.12783 * 4 3 2 34 34 H 1.07996 * 119.84643 * 359.70111 * 7 6 5 35 35 H 1.08003 * 120.01892 * 179.79322 * 8 7 6 36 36 H 0.97000 * 119.99997 * 324.90418 * 10 9 8 37 37 H 1.08996 * 109.47466 * 300.01188 * 13 11 10 38 38 H 1.09004 * 109.46674 * 60.00356 * 13 11 10 39 39 H 1.09002 * 109.46959 * 300.00515 * 14 13 11 40 40 H 1.09001 * 109.46817 * 60.00288 * 14 13 11 41 41 H 1.08998 * 109.46585 * 299.99979 * 15 14 13 42 42 H 1.08999 * 109.46881 * 60.00052 * 15 14 13 43 43 H 1.09004 * 109.47156 * 299.99693 * 16 15 14 44 44 H 1.08996 * 109.47827 * 59.99379 * 16 15 14 45 45 H 0.96997 * 120.00182 * 180.02562 * 20 19 17 46 46 H 1.07997 * 119.90654 * 179.91619 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3700 0.0000 4 6 1.8080 1.9659 -1.4013 5 8 2.5924 1.1933 -2.3159 6 6 2.5136 -0.1616 -2.1962 7 6 2.9973 -0.9508 -3.2304 8 6 2.9347 -2.3277 -3.1440 9 6 2.3952 -2.9277 -2.0141 10 7 2.3372 -4.3244 -1.9221 11 6 2.5105 -4.9291 -0.7302 12 8 2.6329 -4.2628 0.2758 13 6 2.5520 -6.4333 -0.6472 14 6 2.7567 -6.8584 0.8082 15 6 2.7995 -8.3856 0.8923 16 6 3.0035 -8.8106 2.3478 17 6 3.0450 -10.3147 2.4307 18 1 2.9362 -10.9082 1.5349 19 6 3.2217 -10.9333 3.6502 20 7 3.3536 -10.2108 4.7411 21 14 3.2724 -12.7979 3.7530 22 1 3.1012 -13.3733 2.3948 23 1 4.5799 -13.2274 4.3110 24 1 2.1771 -13.2749 4.6351 25 6 1.9135 -2.1439 -0.9770 26 6 1.9702 -0.7569 -1.0639 27 1 -0.3633 -1.0231 0.0973 28 1 -0.3633 0.5957 0.8374 29 1 -0.3633 0.4273 -0.9346 30 1 1.4507 1.9708 0.7287 31 1 3.0551 1.3550 0.2529 32 1 0.7568 1.9180 -1.6853 33 1 2.1462 3.0021 -1.4095 34 1 3.4204 -0.4859 -4.1085 35 1 3.3094 -2.9374 -3.9529 36 1 2.1725 -4.8563 -2.7164 37 1 1.6123 -6.8437 -1.0166 38 1 3.3758 -6.8081 -1.2548 39 1 3.6964 -6.4480 1.1779 40 1 1.9327 -6.4837 1.4154 41 1 1.8599 -8.7962 0.5224 42 1 3.6236 -8.7599 0.2851 43 1 3.9428 -8.3999 2.7180 44 1 2.1791 -8.4363 2.9547 45 1 3.4783 -10.6460 5.5989 46 1 1.4928 -2.6116 -0.0992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588160399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:34 Heat of formation + Delta-G solvation = -51.236072 kcal Electronic energy + Delta-G solvation = -25705.687090 eV Core-core repulsion = 21981.119696 eV Total energy + Delta-G solvation = -3724.567394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48787 -40.16789 -37.69596 -36.81140 -34.95892 -34.46132 -32.63546 -30.98092 -30.43457 -29.49017 -28.55554 -26.04054 -25.46235 -24.29753 -23.19905 -22.17514 -20.50941 -20.27594 -19.97300 -18.29035 -17.80448 -17.35416 -16.52340 -16.16702 -15.97558 -15.69536 -15.31840 -14.99788 -14.75302 -14.46996 -14.32775 -14.10117 -13.92530 -13.62853 -13.45091 -12.71122 -12.65515 -12.52071 -12.45870 -12.26282 -11.88644 -11.71514 -11.69105 -11.58357 -11.34862 -10.99413 -10.54811 -10.48035 -10.41855 -10.06388 -9.87776 -9.60748 -9.56089 -9.21945 -8.96873 -8.41933 -8.30038 -7.90637 -5.94510 -3.96962 0.99826 1.14855 2.59336 2.90161 2.95366 3.28256 3.33700 3.40886 3.44779 3.57026 4.13372 4.47321 4.49530 4.52625 4.59411 4.77895 4.83494 4.92814 4.96726 5.00061 5.09387 5.21849 5.29972 5.33185 5.38549 5.40939 5.47306 5.60890 5.63793 5.82712 5.97162 6.06103 6.12304 6.16134 6.28942 6.44493 6.53041 6.66116 6.71957 6.83434 7.01515 7.17230 7.20007 7.30308 7.75260 7.90841 8.06925 8.13089 8.48679 9.11027 9.66694 11.16836 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027307 B = 0.001983 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.115956 B =14114.466551 C =14826.470068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.489 5.489 3 C 0.016 3.984 4 C 0.021 3.979 5 O -0.311 6.311 6 C 0.067 3.933 7 C -0.114 4.114 8 C -0.124 4.124 9 C 0.132 3.868 10 N -0.679 5.679 11 C 0.510 3.490 12 O -0.512 6.512 13 C -0.137 4.137 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.519 4.519 18 H 0.055 0.945 19 C 0.054 3.946 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.086 4.086 26 C 0.045 3.955 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.411 0.589 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.259 0.741 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.511 24.875 -18.605 31.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.205 5.205 3 C -0.112 4.112 4 C -0.056 4.056 5 O -0.225 6.225 6 C 0.019 3.981 7 C -0.134 4.134 8 C -0.145 4.145 9 C 0.037 3.963 10 N -0.326 5.326 11 C 0.299 3.701 12 O -0.386 6.386 13 C -0.177 4.177 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.147 4.147 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.108 4.108 26 C -0.052 4.052 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.131 0.869 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.246 0.754 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.156 25.181 -17.299 30.983 hybrid contribution -0.325 -0.870 -0.705 1.166 sum -5.481 24.311 -18.003 30.744 Atomic orbital electron populations 1.22587 0.84924 1.03716 1.00853 1.59086 1.08639 1.12475 1.40340 1.22992 1.03132 0.88392 0.96716 1.23539 0.95698 0.96014 0.90318 1.86304 1.65177 1.14530 1.56488 1.18988 1.02683 0.82970 0.93411 1.20164 1.03235 0.92140 0.97834 1.20693 1.01242 0.93985 0.98613 1.17507 0.99734 0.83208 0.95822 1.43684 1.72422 1.04592 1.11885 1.21351 0.74816 0.91664 0.82304 1.90729 1.46737 1.66365 1.34747 1.21816 1.04247 0.89384 1.02203 1.21474 1.02884 0.97846 0.92009 1.21648 1.00122 0.91791 1.01210 1.19102 0.97196 0.95778 0.89724 1.21319 1.49197 0.92137 0.93120 0.92695 1.25051 0.95518 0.98140 0.95943 1.69981 1.50066 1.35012 0.98373 0.86556 0.77551 0.85998 0.77997 1.19783 1.21065 1.21065 1.20958 0.99569 0.90671 0.99604 1.18536 1.04496 0.93137 0.89031 0.90312 0.90368 0.94945 0.88215 0.88684 0.91700 0.86903 0.84813 0.84888 0.75359 0.88819 0.88757 0.91682 0.91702 0.93441 0.93425 0.96565 0.96577 0.93098 0.83300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.19 60.07 0.55 0.76 16 2 N -0.49 -5.19 4.86 -178.67 -0.87 -6.06 16 3 C 0.02 0.12 6.02 -3.69 -0.02 0.10 16 4 C 0.02 0.15 7.06 37.38 0.26 0.42 16 5 O -0.31 -3.25 10.40 -20.52 -0.21 -3.47 16 6 C 0.07 0.76 6.47 -39.10 -0.25 0.51 16 7 C -0.11 -1.13 9.93 -39.43 -0.39 -1.52 16 8 C -0.12 -1.17 9.96 -39.41 -0.39 -1.56 16 9 C 0.13 1.52 6.30 -83.71 -0.53 0.99 16 10 N -0.68 -6.99 5.34 -9.88 -0.05 -7.04 16 11 C 0.51 6.92 7.67 -10.98 -0.08 6.84 16 12 O -0.51 -9.11 13.42 5.55 0.07 -9.03 16 13 C -0.14 -1.72 5.70 -27.88 -0.16 -1.88 16 14 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 15 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 16 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 17 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 18 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 21 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 25 C -0.09 -1.14 8.12 -39.12 -0.32 -1.46 16 26 C 0.04 0.54 5.12 -83.60 -0.43 0.12 16 27 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 28 H 0.08 0.49 7.98 -51.93 -0.41 0.08 16 29 H 0.03 0.24 6.89 -51.93 -0.36 -0.12 16 30 H 0.10 0.53 7.90 -51.93 -0.41 0.12 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.42 6.80 -51.93 -0.35 0.07 16 33 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 36 H 0.41 2.69 8.82 -40.82 -0.36 2.33 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.15 2.27 6.21 -52.49 -0.33 1.94 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -35.61 374.89 -9.50 -45.12 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.24 Total: -0.79 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.57 Total: -14.44 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.18 Total: -39.95 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.14 Total: -12.50 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.61 -9.50 -45.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.120 kcal (2) G-P(sol) polarization free energy of solvation -35.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds