Wall clock time and date at job start Tue Mar 31 2020 12:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46743 * 110.99749 * 2 1 4 4 C 1.53420 * 108.60064 * 285.47512 * 3 2 1 5 5 O 1.43132 * 107.89361 * 296.72459 * 4 3 2 6 6 C 1.36245 * 116.67717 * 45.36451 * 5 4 3 7 7 C 1.38788 * 118.67216 * 165.38992 * 6 5 4 8 8 C 1.38106 * 120.29703 * 179.97438 * 7 6 5 9 9 C 1.38842 * 119.95668 * 359.51605 * 8 7 6 10 10 N 1.40101 * 120.01845 * 180.31970 * 9 8 7 11 11 C 1.34773 * 120.00108 * 144.89920 * 10 9 8 12 12 O 1.21289 * 120.00273 * 4.62446 * 11 10 9 13 13 C 1.50708 * 120.00223 * 184.61399 * 11 10 9 14 14 C 1.52999 * 109.47201 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46907 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46890 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47053 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00023 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00016 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00134 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99838 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47058 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46896 * 120.00365 * 21 19 17 24 24 H 1.48503 * 109.46949 * 240.00075 * 21 19 17 25 25 C 1.38627 * 119.96788 * 0.33814 * 9 8 7 26 26 C 1.38985 * 121.34287 * 344.99659 * 6 5 4 27 27 H 1.09006 * 109.46669 * 185.43049 * 1 2 3 28 28 H 1.09000 * 109.46853 * 305.42733 * 1 2 3 29 29 H 1.09000 * 109.47046 * 65.42898 * 1 2 3 30 30 H 1.09005 * 109.61610 * 45.21072 * 3 2 1 31 31 H 1.09005 * 109.61540 * 165.74270 * 3 2 1 32 32 H 1.08998 * 109.77781 * 56.32592 * 4 3 2 33 33 H 1.09004 * 109.77187 * 177.12783 * 4 3 2 34 34 H 1.07996 * 119.84643 * 359.70111 * 7 6 5 35 35 H 1.08003 * 120.01892 * 179.79322 * 8 7 6 36 36 H 0.97000 * 119.99997 * 324.90418 * 10 9 8 37 37 H 1.08996 * 109.47466 * 300.01188 * 13 11 10 38 38 H 1.09004 * 109.46674 * 60.00356 * 13 11 10 39 39 H 1.09002 * 109.46959 * 300.00515 * 14 13 11 40 40 H 1.09001 * 109.46817 * 60.00288 * 14 13 11 41 41 H 1.08998 * 109.46585 * 299.99979 * 15 14 13 42 42 H 1.08999 * 109.46881 * 60.00052 * 15 14 13 43 43 H 1.09004 * 109.47156 * 299.99693 * 16 15 14 44 44 H 1.08996 * 109.47827 * 59.99379 * 16 15 14 45 45 H 0.96997 * 120.00182 * 180.02562 * 20 19 17 46 46 H 1.07997 * 119.90654 * 179.91619 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3700 0.0000 4 6 1.8080 1.9659 -1.4013 5 8 2.5924 1.1933 -2.3159 6 6 2.5136 -0.1616 -2.1962 7 6 2.9973 -0.9508 -3.2304 8 6 2.9347 -2.3277 -3.1440 9 6 2.3952 -2.9277 -2.0141 10 7 2.3372 -4.3244 -1.9221 11 6 2.5105 -4.9291 -0.7302 12 8 2.6329 -4.2628 0.2758 13 6 2.5520 -6.4333 -0.6472 14 6 2.7567 -6.8584 0.8082 15 6 2.7995 -8.3856 0.8923 16 6 3.0035 -8.8106 2.3478 17 6 3.0450 -10.3147 2.4307 18 1 2.9362 -10.9082 1.5349 19 6 3.2217 -10.9333 3.6502 20 7 3.3536 -10.2108 4.7411 21 14 3.2724 -12.7979 3.7530 22 1 3.1012 -13.3733 2.3948 23 1 4.5799 -13.2274 4.3110 24 1 2.1771 -13.2749 4.6351 25 6 1.9135 -2.1439 -0.9770 26 6 1.9702 -0.7569 -1.0639 27 1 -0.3633 -1.0231 0.0973 28 1 -0.3633 0.5957 0.8374 29 1 -0.3633 0.4273 -0.9346 30 1 1.4507 1.9708 0.7287 31 1 3.0551 1.3550 0.2529 32 1 0.7568 1.9180 -1.6853 33 1 2.1462 3.0021 -1.4095 34 1 3.4204 -0.4859 -4.1085 35 1 3.3094 -2.9374 -3.9529 36 1 2.1725 -4.8563 -2.7164 37 1 1.6123 -6.8437 -1.0166 38 1 3.3758 -6.8081 -1.2548 39 1 3.6964 -6.4480 1.1779 40 1 1.9327 -6.4837 1.4154 41 1 1.8599 -8.7962 0.5224 42 1 3.6236 -8.7599 0.2851 43 1 3.9428 -8.3999 2.7180 44 1 2.1791 -8.4363 2.9547 45 1 3.4783 -10.6460 5.5989 46 1 1.4928 -2.6116 -0.0992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588160399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:33 Heat of formation + Delta-G solvation = -75.569295 kcal Electronic energy + Delta-G solvation = -25706.742258 eV Core-core repulsion = 21981.119696 eV Total energy + Delta-G solvation = -3725.622562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.25601 -41.14598 -38.58108 -37.54036 -36.63174 -35.42019 -34.61143 -31.83175 -31.68082 -30.57544 -29.43016 -27.51225 -26.43054 -25.14951 -24.42120 -23.46914 -21.81989 -21.28570 -21.18968 -19.05212 -18.63713 -18.41537 -18.20005 -17.42549 -16.87473 -16.72289 -16.47941 -16.05776 -15.75126 -15.60632 -15.46084 -15.16102 -14.75340 -14.62946 -14.54474 -14.18831 -13.79047 -13.58341 -13.39321 -13.32227 -13.19076 -13.12058 -12.84916 -12.59813 -12.46230 -12.30776 -12.15029 -12.13726 -12.01822 -11.37008 -11.34512 -11.14985 -10.91388 -10.75337 -10.55465 -10.36117 -9.21075 -8.72421 -8.18416 -6.30474 0.19382 0.29161 1.40659 1.41655 1.55148 1.58364 2.03867 2.26628 2.42212 2.55160 2.78378 3.14348 3.49299 3.76412 3.83802 3.93704 3.97162 4.04118 4.15828 4.20257 4.22650 4.31726 4.37719 4.41178 4.58551 4.63435 4.69775 4.74029 4.82220 4.83530 4.85221 4.88422 4.91601 5.18230 5.19820 5.27746 5.32559 5.35537 5.39703 5.58042 5.69585 5.79194 5.86410 5.89209 5.97751 6.25821 6.39939 6.46977 6.88567 7.19107 7.39167 8.94058 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027307 B = 0.001983 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.115956 B =14114.466551 C =14826.470068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.514 5.514 3 C 0.014 3.986 4 C 0.020 3.980 5 O -0.323 6.323 6 C 0.057 3.943 7 C -0.116 4.116 8 C -0.112 4.112 9 C 0.117 3.883 10 N -0.658 5.658 11 C 0.509 3.491 12 O -0.565 6.565 13 C -0.124 4.124 14 C -0.097 4.097 15 C -0.095 4.095 16 C 0.017 3.983 17 C -0.539 4.539 18 H 0.067 0.933 19 C -0.009 4.009 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.256 1.256 23 H -0.280 1.280 24 H -0.279 1.279 25 C -0.111 4.111 26 C 0.033 3.967 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.041 0.959 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.157 0.843 35 H 0.169 0.831 36 H 0.431 0.569 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.062 0.938 43 H -0.017 1.017 44 H -0.016 1.016 45 H 0.262 0.738 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 24.541 -21.733 33.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.231 5.231 3 C -0.113 4.113 4 C -0.056 4.056 5 O -0.237 6.237 6 C 0.009 3.991 7 C -0.135 4.135 8 C -0.132 4.132 9 C 0.022 3.978 10 N -0.306 5.306 11 C 0.299 3.701 12 O -0.443 6.443 13 C -0.163 4.163 14 C -0.135 4.135 15 C -0.133 4.133 16 C -0.020 4.020 17 C -0.577 4.577 18 H 0.085 0.915 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.794 3.206 22 H -0.180 1.180 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.133 4.133 26 C -0.064 4.064 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.060 0.940 30 H 0.144 0.856 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.160 0.840 34 H 0.175 0.825 35 H 0.186 0.814 36 H 0.271 0.729 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.002 0.998 44 H 0.002 0.998 45 H 0.071 0.929 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.318 24.853 -20.493 32.648 hybrid contribution -0.287 -0.653 0.310 0.777 sum -5.605 24.200 -20.183 32.007 Atomic orbital electron populations 1.22580 0.83834 1.03186 1.02108 1.59067 1.09804 1.13928 1.40291 1.23080 1.02579 0.87513 0.98150 1.23783 0.96019 0.96791 0.89019 1.86280 1.65876 1.14147 1.57392 1.19215 1.02732 0.83683 0.93515 1.20555 1.02408 0.92402 0.98132 1.21002 0.99740 0.94147 0.98355 1.17690 1.00400 0.83433 0.96284 1.43410 1.71036 1.04466 1.11665 1.21498 0.74180 0.91959 0.82477 1.90731 1.49383 1.67389 1.36751 1.21684 1.07109 0.88771 0.98736 1.21258 1.00928 0.95780 0.95559 1.21443 1.01383 0.93587 0.96857 1.19070 0.94244 0.95185 0.93489 1.21792 1.48932 0.93246 0.93757 0.91456 1.26117 0.94908 1.04085 0.95506 1.70139 1.51062 1.37570 0.99140 0.85323 0.77645 0.78844 0.78754 1.17983 1.20552 1.20519 1.20865 1.01317 0.91635 0.99518 1.18666 1.04889 0.92966 0.89848 0.91954 0.88455 0.94035 0.85645 0.90116 0.90911 0.84049 0.82516 0.81381 0.72895 0.85679 0.85717 0.93978 0.93839 0.91870 0.91922 0.99821 0.99764 0.92887 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.19 127.69 1.17 1.65 16 2 N -0.51 -11.26 4.86 -719.19 -3.49 -14.75 16 3 C 0.01 0.21 6.02 86.47 0.52 0.73 16 4 C 0.02 0.26 7.06 72.12 0.51 0.76 16 5 O -0.32 -6.36 10.40 -96.35 -1.00 -7.36 16 6 C 0.06 1.25 6.47 22.58 0.15 1.39 16 7 C -0.12 -2.07 9.93 22.37 0.22 -1.85 16 8 C -0.11 -1.85 9.96 22.38 0.22 -1.63 16 9 C 0.12 2.61 6.30 38.06 0.24 2.85 16 10 N -0.66 -12.56 5.34 -303.57 -1.62 -14.19 16 11 C 0.51 13.66 7.67 87.66 0.67 14.33 16 12 O -0.56 -21.21 13.42 -3.06 -0.04 -21.25 16 13 C -0.12 -2.88 5.70 29.85 0.17 -2.71 16 14 C -0.10 -3.46 4.50 30.60 0.14 -3.32 16 15 C -0.10 -3.84 5.15 30.60 0.16 -3.68 16 16 C 0.02 0.95 4.97 29.85 0.15 1.10 16 17 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 18 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 19 C -0.01 -0.54 5.46 84.66 0.46 -0.08 16 20 N -0.94 -59.49 13.29 21.45 0.28 -59.20 16 21 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 25 C -0.11 -3.09 8.12 22.57 0.18 -2.90 16 26 C 0.03 0.83 5.12 38.24 0.20 1.03 16 27 H 0.06 1.22 7.85 -2.38 -0.02 1.20 16 28 H 0.10 1.19 7.98 -2.39 -0.02 1.17 16 29 H 0.04 0.60 6.89 -2.39 -0.02 0.58 16 30 H 0.13 1.17 7.90 -2.38 -0.02 1.15 16 31 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.07 0.82 6.80 -2.39 -0.02 0.80 16 33 H 0.14 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.43 4.33 8.82 -92.71 -0.82 3.51 16 37 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 40 H 0.04 1.70 8.10 -2.39 -0.02 1.69 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 43 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 44 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 45 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 46 H 0.12 3.98 6.21 -2.91 -0.02 3.96 16 Total: -1.00 -82.22 374.89 1.71 -80.51 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.16 Total: 12.65 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 5.40 Total: -23.44 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -4.83 Total: -88.14 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.04 Total: -28.61 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -82.22 1.71 -80.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.945 kcal (2) G-P(sol) polarization free energy of solvation -82.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds