Wall clock time and date at job start Tue Mar 31 2020 12:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39430 * 125.89073 * 2 1 4 4 C 1.38745 * 132.70748 * 359.97438 * 3 2 1 5 5 C 1.38303 * 119.88951 * 179.97438 * 4 3 2 6 6 F 1.35102 * 119.89864 * 179.97438 * 5 4 3 7 7 C 1.38595 * 120.20412 * 359.97438 * 5 4 3 8 8 C 1.38117 * 120.22570 * 0.29121 * 7 5 4 9 9 C 1.38729 * 119.93698 * 359.45730 * 8 7 5 10 10 N 1.39555 * 132.69997 * 180.20033 * 9 8 7 11 11 H 0.96993 * 125.92551 * 0.25654 * 10 9 8 12 12 C 1.37171 * 108.15625 * 180.29177 * 10 9 8 13 13 N 1.30638 * 125.60647 * 179.97438 * 12 10 9 14 14 C 1.46502 * 120.00253 * 0.02562 * 13 12 10 15 15 C 1.53042 * 109.46043 * 240.03098 * 14 13 12 16 16 C 1.53200 * 109.30939 * 178.59847 * 15 14 13 17 17 N 1.46931 * 108.76653 * 54.65457 * 16 15 14 18 18 C 1.36933 * 120.63125 * 126.35890 * 17 16 15 19 19 H 1.07992 * 119.99949 * 208.01965 * 18 17 16 20 20 C 1.38810 * 119.99988 * 28.02192 * 18 17 16 21 21 N 1.31621 * 120.00141 * 17.52367 * 20 18 17 22 22 Si 1.86804 * 119.99986 * 197.52291 * 20 18 17 23 23 H 1.48500 * 109.47046 * 94.06800 * 22 20 18 24 24 H 1.48500 * 109.47114 * 214.06452 * 22 20 18 25 25 H 1.48493 * 109.46838 * 334.06775 * 22 20 18 26 26 C 1.46919 * 118.73493 * 306.37998 * 17 16 15 27 27 C 1.53031 * 109.46379 * 119.97018 * 14 13 12 28 28 H 1.08999 * 109.47115 * 90.00165 * 1 2 3 29 29 H 1.09004 * 109.46623 * 209.99397 * 1 2 3 30 30 H 1.08989 * 109.47542 * 329.99536 * 1 2 3 31 31 H 1.07994 * 120.05416 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.88590 * 180.02562 * 7 5 4 33 33 H 1.08001 * 120.03484 * 179.70522 * 8 7 5 34 34 H 1.09008 * 109.45769 * 0.02562 * 14 13 12 35 35 H 1.09001 * 109.49207 * 298.55985 * 15 14 13 36 36 H 1.08994 * 109.50261 * 58.65734 * 15 14 13 37 37 H 1.08992 * 109.59733 * 294.85996 * 16 15 14 38 38 H 1.09000 * 109.69982 * 174.50304 * 16 15 14 39 39 H 0.97004 * 120.00141 * 180.02562 * 21 20 18 40 40 H 1.09001 * 109.59105 * 293.82301 * 26 17 16 41 41 H 1.09000 * 109.70455 * 173.46888 * 26 17 16 42 42 H 1.09005 * 109.49811 * 301.33954 * 27 14 13 43 43 H 1.09001 * 109.50069 * 61.40081 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2824 1.1296 0.0000 4 6 2.0081 2.4896 -0.0005 5 6 3.0473 3.4023 0.0002 6 9 2.7804 4.7267 -0.0008 7 6 4.3616 2.9624 0.0019 8 6 4.6422 1.6101 -0.0032 9 6 3.6057 0.6879 0.0014 10 7 3.5804 -0.7074 0.0018 11 1 4.3554 -1.2907 0.0022 12 6 2.2694 -1.1111 0.0009 13 7 1.8551 -2.3500 0.0004 14 6 2.8260 -3.4472 0.0016 15 6 2.6255 -4.3067 -1.2487 16 6 3.6649 -5.4321 -1.2618 17 7 3.5729 -6.1753 0.0024 18 6 3.4069 -7.5345 0.0021 19 1 2.9044 -8.0173 0.8272 20 6 3.8844 -8.2919 -1.0587 21 7 4.7795 -7.7842 -1.8794 22 14 3.2568 -10.0316 -1.3214 23 1 2.1253 -10.0096 -2.2829 24 1 4.3512 -10.8759 -1.8642 25 1 2.7950 -10.5920 -0.0262 26 6 3.6618 -5.4322 1.2667 27 6 2.6227 -4.3066 1.2513 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8898 0.5138 31 1 0.9849 2.8350 -0.0013 32 1 5.1691 3.6796 0.0028 33 1 5.6675 1.2707 -0.0067 34 1 3.8364 -3.0379 0.0032 35 1 1.6239 -4.7364 -1.2379 36 1 2.7473 -3.6890 -2.1384 37 1 4.6632 -5.0066 -1.3637 38 1 3.4676 -6.1049 -2.0964 39 1 5.1130 -8.3133 -2.6209 40 1 4.6599 -5.0067 1.3711 41 1 3.4615 -6.1031 2.1021 42 1 2.7425 -3.6887 2.1413 43 1 1.6209 -4.7359 1.2387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590061228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:53 Heat of formation + Delta-G solvation = 48.235768 kcal Electronic energy + Delta-G solvation = -26185.386557 eV Core-core repulsion = 22373.965032 eV Total energy + Delta-G solvation = -3811.421525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.80955 -42.91939 -39.48287 -38.21552 -36.15170 -35.37535 -33.72931 -31.85541 -31.53472 -31.14851 -29.22290 -28.25571 -26.75861 -24.19884 -23.79334 -23.49684 -22.94604 -21.55728 -20.60849 -19.20470 -18.92334 -18.55476 -17.58910 -17.03174 -16.86465 -16.70421 -16.32759 -16.16178 -15.87926 -15.72505 -15.36450 -15.07210 -14.83843 -14.58183 -14.23681 -14.17265 -14.14582 -13.79420 -13.25579 -13.16526 -12.99271 -12.89935 -12.80248 -12.61641 -12.20265 -12.17803 -12.03930 -11.87229 -11.68109 -11.44935 -11.34979 -10.59721 -10.34997 -10.30016 -9.45114 -8.72361 -8.19138 -7.89469 -5.34728 0.06959 0.22907 1.27542 1.45575 1.47637 1.56606 1.69394 2.08042 2.50057 2.54492 3.24115 3.30017 3.41059 3.61172 3.68136 3.87292 4.01605 4.04765 4.17976 4.18809 4.29994 4.44923 4.49254 4.51321 4.55073 4.65204 4.70160 4.81491 4.84460 4.95492 5.00410 5.03192 5.11375 5.15416 5.18359 5.24898 5.33826 5.47305 5.60262 5.63407 5.70508 5.83801 6.01953 6.36867 6.39974 7.12343 7.28013 7.82877 8.35482 9.17273 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.031856 B = 0.002558 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.757793 B =10943.610696 C =11294.327176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.527 5.527 3 C 0.115 3.885 4 C -0.146 4.146 5 C 0.096 3.904 6 F -0.140 7.140 7 C -0.138 4.138 8 C -0.080 4.080 9 C 0.074 3.926 10 N -0.670 5.670 11 H 0.434 0.566 12 C 0.580 3.420 13 N -0.640 5.640 14 C 0.129 3.871 15 C -0.110 4.110 16 C 0.183 3.817 17 N -0.610 5.610 18 C -0.264 4.264 19 H 0.066 0.934 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.267 1.267 26 C 0.145 3.855 27 C -0.104 4.104 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.032 0.968 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.000 1.000 38 H 0.054 0.946 39 H 0.251 0.749 40 H 0.018 0.982 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.875 25.579 4.476 26.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.233 5.233 3 C 0.013 3.987 4 C -0.169 4.169 5 C 0.075 3.925 6 F -0.118 7.118 7 C -0.159 4.159 8 C -0.102 4.102 9 C -0.030 4.030 10 N -0.304 5.304 11 H 0.277 0.723 12 C 0.218 3.782 13 N -0.382 5.382 14 C 0.018 3.982 15 C -0.150 4.150 16 C 0.056 3.944 17 N -0.333 5.333 18 C -0.394 4.394 19 H 0.084 0.916 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.796 3.204 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.192 1.192 26 C 0.019 3.981 27 C -0.144 4.144 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.175 0.825 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.018 0.982 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.799 24.916 4.373 25.748 hybrid contribution 0.893 -1.196 -0.466 1.563 sum -3.907 23.720 3.907 24.355 Atomic orbital electron populations 1.21893 0.73003 1.04992 1.03587 1.43831 1.06868 1.00862 1.71733 1.17822 0.88154 0.88634 1.04111 1.19905 1.01027 0.88073 1.07909 1.17159 0.93514 0.77148 1.04701 1.91504 1.94843 1.31317 1.94164 1.21062 0.95539 0.95819 1.03462 1.20200 0.98394 0.90351 1.01239 1.18491 0.94696 0.83852 1.05945 1.43162 1.07603 1.05340 1.74267 0.72319 1.19617 0.78822 0.88258 0.91533 1.72598 1.32323 0.94285 1.38956 1.20817 0.91774 0.90216 0.95366 1.21993 0.99747 0.96784 0.96438 1.20546 0.93328 0.91226 0.89261 1.44303 1.84977 1.03100 1.00954 1.19526 1.29697 0.83485 1.06671 0.91634 1.25803 0.97151 1.01689 0.99946 1.70182 1.30377 1.38635 1.18857 0.85248 0.77183 0.79849 0.78160 1.21406 1.21910 1.19184 1.21037 0.95488 0.92961 0.88628 1.21863 0.99601 0.96483 0.96411 0.91079 0.90079 0.87644 0.82538 0.81417 0.82124 0.95014 0.93573 0.93204 0.98205 0.92756 0.94044 0.96387 0.92444 0.91661 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.75 11.03 127.77 1.41 3.16 16 2 N -0.53 -11.97 3.26 -541.73 -1.76 -13.73 16 3 C 0.12 2.30 6.81 38.36 0.26 2.56 16 4 C -0.15 -2.27 9.98 22.41 0.22 -2.05 16 5 C 0.10 1.44 7.29 22.37 0.16 1.60 16 6 F -0.14 -2.22 17.26 44.97 0.78 -1.45 16 7 C -0.14 -1.70 10.01 22.33 0.22 -1.48 16 8 C -0.08 -1.12 10.07 22.36 0.23 -0.89 16 9 C 0.07 1.47 7.22 38.34 0.28 1.75 16 10 N -0.67 -16.02 6.01 -189.50 -1.14 -17.16 16 11 H 0.43 9.76 7.25 -92.71 -0.67 9.09 16 12 C 0.58 16.35 8.39 260.72 2.19 18.54 16 13 N -0.64 -21.54 10.01 -328.97 -3.29 -24.84 16 14 C 0.13 4.75 2.80 45.02 0.13 4.88 16 15 C -0.11 -4.65 5.68 30.68 0.17 -4.47 16 16 C 0.18 9.25 5.31 86.36 0.46 9.71 16 17 N -0.61 -31.95 2.99 -699.10 -2.09 -34.04 16 18 C -0.26 -14.98 9.58 84.03 0.81 -14.18 16 19 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 20 C -0.05 -2.89 4.90 84.86 0.42 -2.47 16 21 N -0.93 -56.25 11.22 21.65 0.24 -56.01 16 22 Si 0.97 45.84 29.59 68.60 2.03 47.87 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 26 C 0.14 6.28 6.51 86.37 0.56 6.84 16 27 C -0.10 -3.90 5.68 30.67 0.17 -3.73 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.55 8.06 -2.38 -0.02 1.53 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 32 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.03 1.11 6.05 -2.38 -0.01 1.09 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.00 -0.01 8.14 -2.39 -0.02 -0.02 16 38 H 0.05 3.11 6.06 -2.39 -0.01 3.09 16 39 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 2.42 7.94 -2.39 -0.02 2.41 16 42 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 43 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -69.55 353.81 2.81 -66.73 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.36 Total: 12.85 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 7.69 Total: 19.77 kcal Atomic # 7 Polarization: -137.73 SS G_CDS: -8.04 Total: -145.78 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.78 Total: -1.45 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -69.55 2.81 -66.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590061228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.970 kcal (2) G-P(sol) polarization free energy of solvation -69.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds