Wall clock time and date at job start Tue Mar 31 2020 12:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21293 * 119.99855 * 2 1 4 4 N 1.34775 * 120.00000 * 180.02562 * 2 1 3 5 5 C 1.47341 * 121.17748 * 179.97438 * 4 2 1 6 6 C 1.51242 * 109.92712 * 98.95597 * 5 4 2 7 7 C 1.52345 * 113.11750 * 62.94295 * 6 5 4 8 8 N 1.46234 * 111.41719 * 290.59860 * 7 6 5 9 9 C 1.46890 * 111.00081 * 211.78643 * 8 7 6 10 10 C 1.53005 * 109.47397 * 75.28800 * 9 8 7 11 11 O 1.42901 * 109.46870 * 64.71216 * 10 9 8 12 12 C 1.42901 * 113.99872 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47019 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00233 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00038 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99868 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00398 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46998 * 59.99871 * 17 15 13 19 19 H 1.48497 * 109.47303 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47043 * 300.00121 * 17 15 13 21 21 C 1.41027 * 111.09479 * 87.76345 * 8 7 6 22 22 C 1.38530 * 120.02854 * 110.82090 * 21 8 7 23 23 C 1.38355 * 119.65042 * 178.40963 * 22 21 8 24 24 C 1.38285 * 120.18429 * 359.93667 * 23 22 21 25 25 C 1.38286 * 120.34214 * 0.70349 * 24 23 22 26 26 C 1.38581 * 119.61753 * 290.30018 * 21 8 7 27 27 H 1.09000 * 109.47017 * 89.99625 * 1 2 3 28 28 H 1.08997 * 109.46653 * 329.99711 * 1 2 3 29 29 H 1.08998 * 109.46864 * 210.00104 * 1 2 3 30 30 H 1.09005 * 109.39414 * 219.09679 * 5 4 2 31 31 H 1.09001 * 109.39724 * 338.81278 * 5 4 2 32 32 H 1.08997 * 108.75604 * 183.88044 * 6 5 4 33 33 H 1.08997 * 108.75408 * 302.12578 * 6 5 4 34 34 H 1.08995 * 109.08866 * 51.09910 * 7 6 5 35 35 H 1.09006 * 109.08681 * 170.10360 * 7 6 5 36 36 H 1.09004 * 109.47687 * 195.28450 * 9 8 7 37 37 H 1.09002 * 109.47540 * 315.28583 * 9 8 7 38 38 H 1.08996 * 109.47442 * 184.71757 * 10 9 8 39 39 H 1.09000 * 109.46665 * 304.71904 * 10 9 8 40 40 H 1.09004 * 109.46980 * 300.00391 * 12 11 10 41 41 H 1.08999 * 109.47329 * 59.99954 * 12 11 10 42 42 H 0.97008 * 119.99995 * 179.97438 * 16 15 13 43 43 H 1.08000 * 120.17148 * 358.39253 * 22 21 8 44 44 H 1.08000 * 119.90460 * 179.97438 * 23 22 21 45 45 H 1.08001 * 119.82269 * 180.68023 * 24 23 22 46 46 H 1.08001 * 120.11582 * 179.91393 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6540 -1.1975 -0.0011 6 6 4.1654 -1.4297 1.4032 7 6 3.7425 -2.7753 1.9788 8 7 2.3055 -2.8135 2.2472 9 6 2.0081 -3.6727 3.4009 10 6 2.3917 -2.9451 4.6910 11 8 1.5658 -1.7898 4.8499 12 6 1.8442 -1.0342 6.0305 13 6 0.9196 0.1540 6.0960 14 1 0.1925 0.3162 5.3142 15 6 1.0026 1.0346 7.1536 16 7 1.8885 0.8373 8.1055 17 14 -0.1429 2.5079 7.2347 18 1 -1.5513 2.0385 7.2685 19 1 0.1471 3.2936 8.4609 20 1 0.0652 3.3631 6.0386 21 6 1.5873 -3.2310 1.1076 22 6 0.9596 -4.4660 1.0977 23 6 0.2296 -4.8538 -0.0117 24 6 0.1258 -4.0129 -1.1045 25 6 0.7618 -2.7849 -1.1039 26 6 1.5053 -2.3950 0.0054 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3632 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5138 30 1 3.9992 -2.0025 -0.6498 31 1 4.0355 -0.2464 -0.3726 32 1 5.2541 -1.3797 1.3924 33 1 3.7852 -0.6388 2.0498 34 1 3.9934 -3.5620 1.2674 35 1 4.2836 -2.9511 2.9086 36 1 0.9429 -3.9036 3.4170 37 1 2.5792 -4.5978 3.3219 38 1 2.2497 -3.6129 5.5407 39 1 3.4369 -2.6402 4.6391 40 1 1.6911 -1.6622 6.9082 41 1 2.8780 -0.6897 6.0061 42 1 1.9472 1.4571 8.8495 43 1 1.0400 -5.1225 1.9514 44 1 -0.2611 -5.8159 -0.0239 45 1 -0.4546 -4.3169 -1.9630 46 1 0.6794 -2.1316 -1.9599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590167353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:54 Heat of formation + Delta-G solvation = -35.363920 kcal Electronic energy + Delta-G solvation = -27843.103379 eV Core-core repulsion = 24119.224254 eV Total energy + Delta-G solvation = -3723.879126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07336 -38.99987 -37.49200 -36.29186 -35.53110 -32.78690 -32.56078 -30.58601 -30.08051 -29.57014 -27.62439 -26.64354 -25.63719 -23.42045 -22.42824 -22.17225 -21.64823 -20.32016 -19.44734 -17.66370 -16.82052 -16.62415 -16.30617 -15.88495 -15.62571 -15.26648 -14.95835 -14.66802 -14.49813 -14.16905 -14.10119 -13.83366 -13.70821 -13.30782 -13.11724 -12.95769 -12.52844 -12.28675 -12.20221 -11.89342 -11.82916 -11.75050 -11.50438 -11.23825 -10.99057 -10.93597 -10.79536 -10.70902 -10.47125 -10.01310 -9.94400 -9.47182 -9.24298 -9.06339 -8.76586 -8.59477 -8.11517 -7.83706 -6.06058 -4.06910 1.10664 1.22606 2.71581 2.99670 3.36795 3.39007 3.43807 3.51196 3.68415 4.38788 4.58460 4.71827 4.75054 4.80021 4.88849 4.94722 5.14680 5.19527 5.26718 5.30720 5.33208 5.38930 5.40621 5.47861 5.48953 5.50174 5.56965 5.63027 5.74101 5.84773 5.90385 6.01046 6.04530 6.11759 6.17878 6.21662 6.32134 6.34577 6.47664 6.70223 7.02911 7.13285 7.21123 7.46710 7.57771 7.85064 8.20726 8.25346 8.64040 9.06520 9.57833 11.05572 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.004170 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.013325 B = 6713.763415 C = 7388.488470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.530 3.470 3 O -0.539 6.539 4 N -0.560 5.560 5 C 0.119 3.881 6 C -0.140 4.140 7 C 0.064 3.936 8 N -0.476 5.476 9 C 0.056 3.944 10 C 0.068 3.932 11 O -0.380 6.380 12 C 0.196 3.804 13 C -0.510 4.510 14 H 0.065 0.935 15 C 0.057 3.943 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.116 3.884 22 C -0.157 4.157 23 C -0.098 4.098 24 C -0.135 4.135 25 C -0.104 4.104 26 C 0.123 3.877 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.036 0.964 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.264 0.736 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.866 -13.789 -19.383 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.321 3.679 3 O -0.416 6.416 4 N -0.289 5.289 5 C -0.003 4.003 6 C -0.179 4.179 7 C -0.061 4.061 8 N -0.191 5.191 9 C -0.070 4.070 10 C -0.011 4.011 11 O -0.299 6.299 12 C 0.122 3.878 13 C -0.548 4.548 14 H 0.083 0.917 15 C -0.144 4.144 16 N -0.540 5.540 17 Si 0.733 3.267 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.017 3.983 22 C -0.179 4.179 23 C -0.116 4.116 24 C -0.154 4.154 25 C -0.124 4.124 26 C 0.030 3.970 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.149 0.851 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.049 -12.506 -19.146 22.892 hybrid contribution -0.113 -0.117 0.452 0.480 sum 0.937 -12.623 -18.693 22.576 Atomic orbital electron populations 1.21894 0.91462 1.05620 1.03999 1.20756 0.90640 0.82260 0.74263 1.90708 1.70824 1.30556 1.49481 1.45557 1.06380 1.03767 1.73209 1.21320 0.78799 1.03097 0.97052 1.21570 1.00587 0.98650 0.97105 1.21863 0.86203 0.97208 1.00834 1.59067 1.07190 1.50620 1.02264 1.22385 1.02359 0.92924 0.89375 1.22238 0.94691 0.89848 0.94295 1.87952 1.58239 1.37229 1.46496 1.20162 0.96055 0.90119 0.81471 1.20994 1.18559 1.07721 1.07546 0.91695 1.24923 0.96013 0.98247 0.95222 1.69957 1.35055 1.37722 1.11288 0.86427 0.80871 0.81976 0.77435 1.20030 1.21171 1.19934 1.19214 0.97413 0.92094 0.89585 1.21374 1.01734 0.94988 0.99778 1.21078 0.97938 0.99553 0.93078 1.20937 1.01264 0.94229 0.98979 1.21301 0.97881 0.96675 0.96564 1.17176 0.99240 0.86986 0.93604 0.89323 0.88704 0.89728 0.91238 0.88922 0.90264 0.89688 0.94059 0.89948 0.89343 0.93093 0.93920 0.94572 0.98029 0.97975 0.92694 0.85139 0.85854 0.85797 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.17 36.01 0.33 -1.90 16 2 C 0.53 8.56 7.74 -10.98 -0.08 8.47 16 3 O -0.54 -10.64 16.68 5.55 0.09 -10.55 16 4 N -0.56 -7.88 2.48 -113.74 -0.28 -8.17 16 5 C 0.12 1.49 5.83 -4.47 -0.03 1.47 16 6 C -0.14 -1.85 5.78 -27.95 -0.16 -2.01 16 7 C 0.06 0.82 5.08 -4.52 -0.02 0.80 16 8 N -0.48 -7.07 4.23 -171.82 -0.73 -7.80 16 9 C 0.06 0.80 3.95 -3.83 -0.02 0.79 16 10 C 0.07 1.23 6.09 37.16 0.23 1.45 16 11 O -0.38 -9.30 10.27 -35.23 -0.36 -9.66 16 12 C 0.20 5.50 5.69 36.01 0.20 5.71 16 13 C -0.51 -15.47 9.43 -34.44 -0.32 -15.79 16 14 H 0.06 1.98 7.81 -52.49 -0.41 1.57 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 17 Si 0.91 22.61 29.54 -169.99 -5.02 17.58 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.12 1.51 5.14 -83.39 -0.43 1.09 16 22 C -0.16 -1.70 8.74 -39.43 -0.34 -2.05 16 23 C -0.10 -0.87 10.04 -39.52 -0.40 -1.27 16 24 C -0.13 -1.15 10.03 -39.55 -0.40 -1.55 16 25 C -0.10 -1.04 8.95 -39.24 -0.35 -1.39 16 26 C 0.12 1.55 3.96 -83.60 -0.33 1.22 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.08 1.12 6.92 -51.93 -0.36 0.76 16 30 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.09 1.22 7.29 -51.93 -0.38 0.84 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.04 0.45 7.78 -51.93 -0.40 0.05 16 35 H 0.08 1.02 6.38 -51.93 -0.33 0.69 16 36 H 0.09 1.27 6.79 -51.93 -0.35 0.92 16 37 H 0.05 0.56 7.78 -51.93 -0.40 0.16 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.64 6.75 -51.93 -0.35 0.29 16 40 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 41 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.13 1.26 6.11 -52.49 -0.32 0.94 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -35.63 370.06 -9.30 -44.93 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -7.09 Total: -1.74 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -2.22 Total: -3.38 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.27 Total: -42.76 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.27 Total: -20.21 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.63 -9.30 -44.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590167353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.568 kcal (2) G-P(sol) polarization free energy of solvation -35.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds