Wall clock time and date at job start Tue Mar 31 2020 12:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47071 * 2 1 4 4 C 1.42899 * 114.00233 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.49680 * 329.93883 * 4 3 2 6 6 C 1.53043 * 109.49679 * 209.84160 * 4 3 2 7 7 C 1.53041 * 109.53481 * 178.68133 * 6 4 3 8 8 C 1.53200 * 109.31185 * 61.36570 * 7 6 4 9 9 N 1.46926 * 108.77295 * 305.36366 * 8 7 6 10 10 C 1.34780 * 120.62586 * 233.62963 * 9 8 7 11 11 O 1.21585 * 119.99756 * 174.72987 * 10 9 8 12 12 N 1.34776 * 120.00303 * 354.73225 * 10 9 8 13 13 C 1.39956 * 120.00134 * 184.65711 * 12 10 9 14 14 C 1.39293 * 119.94408 * 34.63617 * 13 12 10 15 15 C 1.38491 * 120.42352 * 179.97438 * 14 13 12 16 16 C 1.37683 * 120.32554 * 0.02562 * 15 14 13 17 17 C 1.40741 * 119.88042 * 359.97438 * 16 15 14 18 18 C 1.41406 * 120.20857 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00265 * 151.00700 * 18 17 16 20 20 C 1.39930 * 119.99963 * 331.01439 * 18 17 16 21 21 N 1.30833 * 120.00269 * 161.78558 * 20 18 17 22 22 Si 1.86800 * 120.00280 * 341.78268 * 20 18 17 23 23 H 1.48500 * 109.47356 * 87.76014 * 22 20 18 24 24 H 1.48495 * 109.47671 * 207.76755 * 22 20 18 25 25 H 1.48504 * 109.46715 * 327.76395 * 22 20 18 26 26 C 1.38235 * 119.94868 * 214.36454 * 13 12 10 27 27 C 1.46924 * 118.73913 * 53.60969 * 9 8 7 28 28 H 1.09001 * 109.47673 * 299.99727 * 1 2 3 29 29 H 1.09007 * 109.46842 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47147 * 60.00079 * 1 2 3 31 31 H 1.09000 * 109.47147 * 119.99921 * 2 1 3 32 32 H 1.09001 * 109.47673 * 240.00273 * 2 1 3 33 33 H 1.08999 * 109.45946 * 298.70134 * 6 4 3 34 34 H 1.08994 * 109.45854 * 58.66560 * 6 4 3 35 35 H 1.08992 * 109.50044 * 301.41254 * 7 6 4 36 36 H 1.09000 * 109.52281 * 181.32584 * 7 6 4 37 37 H 1.08998 * 109.58545 * 185.57593 * 8 7 6 38 38 H 1.09003 * 109.58658 * 65.15082 * 8 7 6 39 39 H 0.97000 * 119.99825 * 4.66039 * 12 10 9 40 40 H 1.07993 * 119.78628 * 0.02627 * 14 13 12 41 41 H 1.08000 * 119.83303 * 180.02562 * 15 14 13 42 42 H 1.08001 * 120.05796 * 180.02562 * 16 15 14 43 43 H 0.96993 * 120.00431 * 179.97438 * 21 20 18 44 44 H 1.07999 * 120.15514 * 359.97438 * 26 13 12 45 45 H 1.09003 * 109.58225 * 186.60540 * 27 9 8 46 46 H 1.08994 * 109.70545 * 66.25276 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6025 0.5156 6 6 3.8408 2.7482 0.7184 7 6 5.3673 2.8536 0.7484 8 6 5.8996 2.9096 -0.6870 9 7 5.3894 1.7468 -1.4262 10 6 6.2341 0.9217 -2.0760 11 8 5.8112 -0.0890 -2.6032 12 7 7.5475 1.2169 -2.1414 13 6 8.4086 0.4133 -2.8974 14 6 7.9559 -0.1729 -4.0771 15 6 8.7997 -0.9694 -4.8332 16 6 10.0962 -1.1910 -4.4262 17 6 10.5674 -0.6052 -3.2364 18 6 11.8979 -0.8278 -2.8122 19 1 12.4101 -0.0793 -2.2259 20 6 12.5509 -2.0178 -3.1522 21 7 13.8554 -2.0905 -3.0846 22 14 11.5600 -3.5026 -3.7027 23 1 11.3440 -3.4371 -5.1704 24 1 12.3010 -4.7447 -3.3663 25 1 10.2471 -3.5063 -3.0088 26 6 9.7087 0.2072 -2.4751 27 6 3.9411 1.5005 -1.4432 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.4279 3.6065 0.1885 34 1 3.4578 2.7328 1.7388 35 1 5.7822 1.9832 1.2566 36 1 5.6595 3.7590 1.2803 37 1 6.9892 2.8849 -0.6739 38 1 5.5586 3.8266 -1.1677 39 1 7.8960 1.9862 -1.6644 40 1 6.9407 -0.0045 -4.4046 41 1 8.4388 -1.4189 -5.7465 42 1 10.7506 -1.8126 -5.0194 43 1 14.3080 -2.9155 -3.3199 44 1 10.0619 0.6652 -1.5631 45 1 3.7386 0.5460 -1.9291 46 1 3.4385 2.3008 -1.9863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590856652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:48 Heat of formation + Delta-G solvation = -50.957971 kcal Electronic energy + Delta-G solvation = -26579.156871 eV Core-core repulsion = 22854.601536 eV Total energy + Delta-G solvation = -3724.555335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.63366 -38.97261 -37.65690 -36.57313 -34.55784 -33.34551 -32.72626 -31.71366 -30.26889 -29.91622 -28.46488 -25.53880 -25.07241 -23.62299 -22.75950 -21.99316 -21.08087 -20.73124 -19.30185 -18.37347 -17.63140 -16.86637 -16.32303 -15.88899 -15.73953 -15.39333 -15.02677 -14.75983 -14.49131 -14.40596 -14.10403 -13.71937 -13.40558 -13.27761 -13.14676 -12.69124 -12.59209 -12.55769 -12.41116 -11.97256 -11.79286 -11.53921 -11.43442 -11.33341 -11.29542 -11.08302 -10.94462 -10.78892 -10.47355 -10.06905 -9.93281 -9.76479 -9.57105 -9.25923 -9.06060 -8.66671 -7.65097 -7.11445 -6.91949 -4.46917 2.45680 2.63798 2.67958 3.16128 3.25495 3.34639 3.38707 3.49423 4.00770 4.02841 4.48374 4.51660 4.58008 4.61352 4.69429 4.82516 4.89818 4.97073 5.11164 5.15437 5.24476 5.42442 5.43325 5.47983 5.52408 5.55968 5.62076 5.64791 5.80652 5.83388 5.93335 6.04915 6.28505 6.39169 6.47669 6.55339 6.72853 6.78238 6.96991 6.98798 7.26501 7.40646 7.58789 7.73332 7.89441 8.08753 8.20951 8.37696 8.65477 8.79474 8.86391 10.10304 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.002800 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.873732 B = 9996.742525 C =10559.659553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.380 6.380 4 C 0.077 3.923 5 H 0.065 0.935 6 C -0.114 4.114 7 C -0.133 4.133 8 C 0.108 3.892 9 N -0.630 5.630 10 C 0.705 3.295 11 O -0.569 6.569 12 N -0.681 5.681 13 C 0.185 3.815 14 C -0.231 4.231 15 C -0.066 4.066 16 C -0.253 4.253 17 C 0.108 3.892 18 C -0.450 4.450 19 H 0.090 0.910 20 C 0.085 3.915 21 N -0.811 5.811 22 Si 0.914 3.086 23 H -0.267 1.267 24 H -0.294 1.294 25 H -0.248 1.248 26 C -0.233 4.233 27 C 0.111 3.889 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.397 0.603 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.285 0.715 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.308 8.626 7.743 22.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.299 6.299 4 C 0.018 3.982 5 H 0.083 0.917 6 C -0.152 4.152 7 C -0.171 4.171 8 C -0.016 4.016 9 N -0.370 5.370 10 C 0.408 3.592 11 O -0.445 6.445 12 N -0.329 5.329 13 C 0.092 3.908 14 C -0.252 4.252 15 C -0.084 4.084 16 C -0.273 4.273 17 C 0.104 3.896 18 C -0.478 4.478 19 H 0.108 0.892 20 C -0.133 4.133 21 N -0.435 5.435 22 Si 0.742 3.258 23 H -0.193 1.193 24 H -0.221 1.221 25 H -0.171 1.171 26 C -0.255 4.255 27 C -0.013 4.013 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.234 0.766 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.112 0.888 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.510 7.950 7.367 22.318 hybrid contribution 0.130 -0.505 0.075 0.527 sum -19.380 7.445 7.443 22.055 Atomic orbital electron populations 1.21739 0.93684 1.02300 1.02997 1.22563 0.95532 0.83671 1.00519 1.87887 1.20305 1.26680 1.95023 1.22444 0.81164 0.98853 0.95756 0.91676 1.21561 0.95372 0.97116 1.01103 1.21924 0.95221 1.03333 0.96648 1.21693 0.99091 0.88867 0.91919 1.47189 1.06216 1.28417 1.55163 1.15828 0.81166 0.82724 0.79522 1.90933 1.76254 1.26041 1.51243 1.42821 1.06022 1.31526 1.52546 1.17323 0.89099 0.93895 0.90459 1.20348 0.99945 1.08194 0.96720 1.20495 0.93543 0.96775 0.97631 1.21218 0.96666 1.09796 0.99584 1.17466 0.92383 0.89850 0.89905 1.19401 0.95250 1.03302 1.29890 0.89246 1.26121 0.94714 1.00892 0.91588 1.69691 1.09198 1.28704 1.35921 0.86350 0.81019 0.78578 0.79896 1.19306 1.22123 1.17142 1.20681 0.92726 1.10450 1.01618 1.21834 0.78933 1.03676 0.96819 0.91977 0.91080 0.91807 0.93324 0.92933 0.90798 0.90968 0.91085 0.89793 0.90055 0.90962 0.76592 0.87503 0.88536 0.87701 0.90490 0.88009 0.88751 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.70 16 2 C 0.05 0.49 6.47 37.16 0.24 0.73 16 3 O -0.38 -4.01 9.99 -35.23 -0.35 -4.36 16 4 C 0.08 0.79 2.76 -26.61 -0.07 0.71 16 5 H 0.07 0.72 7.79 -51.93 -0.40 0.31 16 6 C -0.11 -0.92 5.54 -26.69 -0.15 -1.07 16 7 C -0.13 -1.00 6.08 -26.61 -0.16 -1.16 16 8 C 0.11 0.97 6.39 -3.71 -0.02 0.95 16 9 N -0.63 -8.12 2.97 -178.50 -0.53 -8.65 16 10 C 0.71 12.36 8.03 -86.92 -0.70 11.66 16 11 O -0.57 -12.25 13.49 5.29 0.07 -12.17 16 12 N -0.68 -11.85 5.25 -14.27 -0.07 -11.92 16 13 C 0.18 4.03 6.25 -83.76 -0.52 3.51 16 14 C -0.23 -5.29 8.66 -39.10 -0.34 -5.63 16 15 C -0.07 -1.51 10.02 -39.69 -0.40 -1.91 16 16 C -0.25 -6.29 7.33 -38.84 -0.28 -6.58 16 17 C 0.11 2.76 5.13 -106.85 -0.55 2.21 16 18 C -0.45 -12.19 9.57 -37.74 -0.36 -12.55 16 19 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 20 C 0.09 2.26 5.41 -17.34 -0.09 2.17 16 21 N -0.81 -21.71 13.93 55.55 0.77 -20.94 16 22 Si 0.91 21.45 24.62 -169.99 -4.18 17.27 16 23 H -0.27 -6.06 6.31 56.52 0.36 -5.71 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.25 -6.07 7.10 56.52 0.40 -5.67 16 26 C -0.23 -5.41 9.70 -38.69 -0.38 -5.78 16 27 C 0.11 1.33 6.06 -3.71 -0.02 1.30 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.05 0.50 8.02 -51.93 -0.42 0.08 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.68 5.65 -51.93 -0.29 0.39 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.40 5.47 6.31 -40.82 -0.26 5.22 16 40 H 0.11 2.44 6.47 -52.49 -0.34 2.10 16 41 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 42 H 0.11 2.59 4.39 -52.49 -0.23 2.36 16 43 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 44 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 45 H 0.09 1.32 6.87 -51.93 -0.36 0.97 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -31.38 363.78 -9.21 -40.59 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.97 Total: 6.86 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -3.43 Total: -12.14 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.17 Total: -41.51 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.28 Total: -16.54 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.18 Total: 17.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.38 -9.21 -40.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590856652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.368 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds