Wall clock time and date at job start Tue Mar 31 2020 12:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47071 * 2 1 4 4 C 1.42899 * 114.00233 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.49680 * 329.93883 * 4 3 2 6 6 C 1.53043 * 109.49679 * 209.84160 * 4 3 2 7 7 C 1.53041 * 109.53481 * 178.68133 * 6 4 3 8 8 C 1.53200 * 109.31185 * 61.36570 * 7 6 4 9 9 N 1.46926 * 108.77295 * 305.36366 * 8 7 6 10 10 C 1.34780 * 120.62586 * 233.62963 * 9 8 7 11 11 O 1.21585 * 119.99756 * 174.72987 * 10 9 8 12 12 N 1.34776 * 120.00303 * 354.73225 * 10 9 8 13 13 C 1.39956 * 120.00134 * 184.65711 * 12 10 9 14 14 C 1.39293 * 119.94408 * 34.63617 * 13 12 10 15 15 C 1.38491 * 120.42352 * 179.97438 * 14 13 12 16 16 C 1.37683 * 120.32554 * 0.02562 * 15 14 13 17 17 C 1.40741 * 119.88042 * 359.97438 * 16 15 14 18 18 C 1.41406 * 120.20857 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00265 * 151.00700 * 18 17 16 20 20 C 1.39930 * 119.99963 * 331.01439 * 18 17 16 21 21 N 1.30833 * 120.00269 * 161.78558 * 20 18 17 22 22 Si 1.86800 * 120.00280 * 341.78268 * 20 18 17 23 23 H 1.48500 * 109.47356 * 87.76014 * 22 20 18 24 24 H 1.48495 * 109.47671 * 207.76755 * 22 20 18 25 25 H 1.48504 * 109.46715 * 327.76395 * 22 20 18 26 26 C 1.38235 * 119.94868 * 214.36454 * 13 12 10 27 27 C 1.46924 * 118.73913 * 53.60969 * 9 8 7 28 28 H 1.09001 * 109.47673 * 299.99727 * 1 2 3 29 29 H 1.09007 * 109.46842 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47147 * 60.00079 * 1 2 3 31 31 H 1.09000 * 109.47147 * 119.99921 * 2 1 3 32 32 H 1.09001 * 109.47673 * 240.00273 * 2 1 3 33 33 H 1.08999 * 109.45946 * 298.70134 * 6 4 3 34 34 H 1.08994 * 109.45854 * 58.66560 * 6 4 3 35 35 H 1.08992 * 109.50044 * 301.41254 * 7 6 4 36 36 H 1.09000 * 109.52281 * 181.32584 * 7 6 4 37 37 H 1.08998 * 109.58545 * 185.57593 * 8 7 6 38 38 H 1.09003 * 109.58658 * 65.15082 * 8 7 6 39 39 H 0.97000 * 119.99825 * 4.66039 * 12 10 9 40 40 H 1.07993 * 119.78628 * 0.02627 * 14 13 12 41 41 H 1.08000 * 119.83303 * 180.02562 * 15 14 13 42 42 H 1.08001 * 120.05796 * 180.02562 * 16 15 14 43 43 H 0.96993 * 120.00431 * 179.97438 * 21 20 18 44 44 H 1.07999 * 120.15514 * 359.97438 * 26 13 12 45 45 H 1.09003 * 109.58225 * 186.60540 * 27 9 8 46 46 H 1.08994 * 109.70545 * 66.25276 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6025 0.5156 6 6 3.8408 2.7482 0.7184 7 6 5.3673 2.8536 0.7484 8 6 5.8996 2.9096 -0.6870 9 7 5.3894 1.7468 -1.4262 10 6 6.2341 0.9217 -2.0760 11 8 5.8112 -0.0890 -2.6032 12 7 7.5475 1.2169 -2.1414 13 6 8.4086 0.4133 -2.8974 14 6 7.9559 -0.1729 -4.0771 15 6 8.7997 -0.9694 -4.8332 16 6 10.0962 -1.1910 -4.4262 17 6 10.5674 -0.6052 -3.2364 18 6 11.8979 -0.8278 -2.8122 19 1 12.4101 -0.0793 -2.2259 20 6 12.5509 -2.0178 -3.1522 21 7 13.8554 -2.0905 -3.0846 22 14 11.5600 -3.5026 -3.7027 23 1 11.3440 -3.4371 -5.1704 24 1 12.3010 -4.7447 -3.3663 25 1 10.2471 -3.5063 -3.0088 26 6 9.7087 0.2072 -2.4751 27 6 3.9411 1.5005 -1.4432 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.4279 3.6065 0.1885 34 1 3.4578 2.7328 1.7388 35 1 5.7822 1.9832 1.2566 36 1 5.6595 3.7590 1.2803 37 1 6.9892 2.8849 -0.6739 38 1 5.5586 3.8266 -1.1677 39 1 7.8960 1.9862 -1.6644 40 1 6.9407 -0.0045 -4.4046 41 1 8.4388 -1.4189 -5.7465 42 1 10.7506 -1.8126 -5.0194 43 1 14.3080 -2.9155 -3.3199 44 1 10.0619 0.6652 -1.5631 45 1 3.7386 0.5460 -1.9291 46 1 3.4385 2.3008 -1.9863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590856652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:46 Heat of formation + Delta-G solvation = -70.018263 kcal Electronic energy + Delta-G solvation = -26579.983387 eV Core-core repulsion = 22854.601536 eV Total energy + Delta-G solvation = -3725.381851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.89446 -40.10579 -39.16360 -37.62307 -36.21526 -35.11774 -33.75765 -32.44011 -32.16299 -30.97335 -29.91521 -27.06107 -26.51689 -24.38050 -23.65294 -23.29049 -22.86447 -21.94603 -20.58888 -19.77180 -19.16560 -17.86204 -17.70874 -17.39505 -17.00162 -16.51996 -16.36662 -16.07801 -15.76403 -15.57850 -15.39023 -15.04817 -14.58723 -14.44222 -14.18202 -14.11864 -13.99897 -13.82082 -13.35972 -13.29916 -13.05860 -13.00058 -12.81746 -12.48540 -12.40581 -12.13273 -12.02769 -11.97562 -11.80883 -11.56696 -11.53578 -11.37427 -10.97885 -10.90939 -10.72899 -9.73279 -9.55519 -8.91854 -8.83438 -6.50606 0.69436 0.77916 1.27565 1.39867 1.43159 1.49178 2.01227 2.13401 2.57468 2.63318 2.87525 3.49704 3.70632 3.75718 3.89843 3.96204 4.13026 4.13646 4.25515 4.29356 4.41458 4.46236 4.53823 4.55624 4.60602 4.64943 4.71523 4.82854 4.85517 4.87466 4.94959 4.97265 4.99844 5.04014 5.12961 5.22909 5.28867 5.30602 5.41382 5.57552 5.65884 5.79664 5.90807 5.97704 6.17744 6.24111 6.39318 6.70446 6.81183 6.86411 7.43444 8.17336 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.002800 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.873732 B = 9996.742525 C =10559.659553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 O -0.387 6.387 4 C 0.081 3.919 5 H 0.053 0.947 6 C -0.109 4.109 7 C -0.126 4.126 8 C 0.098 3.902 9 N -0.619 5.619 10 C 0.701 3.299 11 O -0.614 6.614 12 N -0.672 5.672 13 C 0.193 3.807 14 C -0.231 4.231 15 C -0.068 4.068 16 C -0.268 4.268 17 C 0.090 3.910 18 C -0.479 4.479 19 H 0.065 0.935 20 C 0.053 3.947 21 N -0.844 5.844 22 Si 0.962 3.038 23 H -0.254 1.254 24 H -0.277 1.277 25 H -0.266 1.266 26 C -0.238 4.238 27 C 0.111 3.889 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.416 0.584 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.294 0.706 44 H 0.115 0.885 45 H 0.067 0.933 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.340 9.807 8.384 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.306 6.306 4 C 0.022 3.978 5 H 0.071 0.929 6 C -0.147 4.147 7 C -0.164 4.164 8 C -0.024 4.024 9 N -0.357 5.357 10 C 0.403 3.597 11 O -0.494 6.494 12 N -0.322 5.322 13 C 0.099 3.901 14 C -0.253 4.253 15 C -0.086 4.086 16 C -0.288 4.288 17 C 0.087 3.913 18 C -0.509 4.509 19 H 0.083 0.917 20 C -0.162 4.162 21 N -0.470 5.470 22 Si 0.787 3.213 23 H -0.180 1.180 24 H -0.203 1.203 25 H -0.190 1.190 26 C -0.260 4.260 27 C -0.013 4.013 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.256 0.744 40 H 0.127 0.873 41 H 0.142 0.858 42 H 0.122 0.878 43 H 0.105 0.895 44 H 0.133 0.867 45 H 0.086 0.914 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.555 9.197 8.049 24.779 hybrid contribution 0.563 -0.734 -0.084 0.929 sum -20.992 8.463 7.965 23.994 Atomic orbital electron populations 1.21739 0.92147 1.03327 1.03084 1.22702 0.96837 0.83143 1.00242 1.87884 1.20319 1.27437 1.94940 1.22426 0.81088 0.99824 0.94509 0.92919 1.21571 0.95789 0.95916 1.01401 1.21914 0.94562 1.04382 0.95543 1.22081 0.99686 0.87943 0.92661 1.47229 1.06037 1.28400 1.54043 1.15993 0.81246 0.82792 0.79641 1.90901 1.76964 1.28203 1.53294 1.42620 1.05787 1.31569 1.52216 1.17310 0.89102 0.93389 0.90306 1.20579 0.99950 1.07770 0.96959 1.20797 0.92846 0.96418 0.98584 1.21296 0.97503 1.10418 0.99582 1.17643 0.92265 0.90768 0.90630 1.19410 0.96347 1.03762 1.31346 0.91727 1.26685 0.95381 1.02496 0.91620 1.69703 1.10043 1.29869 1.37389 0.85614 0.79000 0.76698 0.80004 1.17987 1.20324 1.19032 1.20827 0.93142 1.10051 1.01946 1.21912 0.78417 1.02782 0.98171 0.91507 0.89644 0.92031 0.92878 0.93994 0.89816 0.90002 0.92173 0.86720 0.89333 0.88556 0.74404 0.87261 0.85802 0.87818 0.89529 0.86685 0.91432 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 71.98 0.74 -1.18 16 2 C 0.05 0.82 6.47 71.98 0.47 1.29 16 3 O -0.39 -7.65 9.99 -148.98 -1.49 -9.13 16 4 C 0.08 1.53 2.76 30.67 0.08 1.61 16 5 H 0.05 1.13 7.79 -2.39 -0.02 1.11 16 6 C -0.11 -1.44 5.54 30.62 0.17 -1.27 16 7 C -0.13 -1.46 6.08 30.68 0.19 -1.27 16 8 C 0.10 1.45 6.39 86.37 0.55 2.00 16 9 N -0.62 -14.84 2.97 -836.91 -2.49 -17.33 16 10 C 0.70 23.77 8.03 179.05 1.44 25.21 16 11 O -0.61 -26.33 13.49 -3.98 -0.05 -26.38 16 12 N -0.67 -22.32 5.25 -317.32 -1.66 -23.98 16 13 C 0.19 8.22 6.25 38.10 0.24 8.46 16 14 C -0.23 -10.34 8.66 22.58 0.20 -10.14 16 15 C -0.07 -3.05 10.02 22.20 0.22 -2.82 16 16 C -0.27 -13.24 7.33 22.75 0.17 -13.07 16 17 C 0.09 4.67 5.13 -21.31 -0.11 4.56 16 18 C -0.48 -26.73 9.57 23.46 0.22 -26.50 16 19 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 20 C 0.05 2.88 5.41 85.25 0.46 3.34 16 21 N -0.84 -46.02 13.93 21.82 0.30 -45.72 16 22 Si 0.96 44.18 24.62 68.60 1.69 45.87 16 23 H -0.25 -11.07 6.31 99.48 0.63 -10.44 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 25 H -0.27 -12.88 7.10 99.48 0.71 -12.18 16 26 C -0.24 -10.97 9.70 22.85 0.22 -10.75 16 27 C 0.11 2.52 6.06 86.36 0.52 3.04 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.87 8.08 -2.39 -0.02 0.85 16 32 H 0.04 0.81 8.02 -2.39 -0.02 0.79 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 1.19 5.65 -2.39 -0.01 1.18 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.42 10.50 6.31 -92.71 -0.58 9.92 16 40 H 0.11 4.87 6.47 -2.91 -0.02 4.85 16 41 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 42 H 0.10 5.07 4.39 -2.91 -0.01 5.06 16 43 H 0.29 14.44 8.30 -92.71 -0.77 13.68 16 44 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 45 H 0.07 1.92 6.87 -2.39 -0.02 1.90 16 46 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -68.91 363.78 2.40 -66.50 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.32 Total: 27.67 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 5.78 Total: -17.49 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -3.85 Total: -87.03 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.54 Total: -35.52 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.69 Total: 45.87 kcal Total: -68.91 2.40 -66.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590856652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.515 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds