Wall clock time and date at job start Tue Mar 31 2020 12:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42892 * 109.47080 * 2 1 4 4 C 1.35899 * 117.00127 * 179.97438 * 3 2 1 5 5 C 1.38805 * 120.02221 * 0.02600 * 4 3 2 6 6 C 1.38168 * 120.08710 * 179.97438 * 5 4 3 7 7 C 1.38175 * 120.12117 * 359.74520 * 6 5 4 8 8 C 1.38883 * 120.03885 * 0.50813 * 7 6 5 9 9 N 1.39943 * 120.03995 * 179.76503 * 8 7 6 10 10 C 1.34779 * 119.99933 * 24.03463 * 9 8 7 11 11 O 1.21585 * 119.99558 * 350.42536 * 10 9 8 12 12 N 1.34770 * 120.00325 * 170.42661 * 10 9 8 13 13 C 1.46934 * 120.62758 * 4.94105 * 12 10 9 14 14 C 1.53194 * 108.77214 * 233.58420 * 13 12 10 15 15 C 1.53040 * 109.31172 * 305.36378 * 14 13 12 16 16 C 1.53039 * 109.53848 * 61.36837 * 15 14 13 17 17 H 1.08995 * 109.50031 * 58.58325 * 16 15 14 18 18 C 1.50702 * 109.49826 * 178.68271 * 16 15 14 19 19 H 1.08007 * 119.99955 * 359.97438 * 18 16 15 20 20 C 1.37878 * 120.00097 * 179.97438 * 18 16 15 21 21 N 1.31517 * 119.99802 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00018 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46962 * 60.00064 * 22 20 18 24 24 H 1.48499 * 109.46980 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47320 * 300.00374 * 22 20 18 26 26 C 1.46920 * 120.63399 * 184.65675 * 12 10 9 27 27 C 1.38590 * 120.02031 * 180.02562 * 4 3 2 28 28 H 1.08993 * 109.47678 * 299.99751 * 1 2 3 29 29 H 1.08997 * 109.47074 * 60.00163 * 1 2 3 30 30 H 1.09008 * 109.46799 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47043 * 240.00209 * 2 1 3 32 32 H 1.09003 * 109.47278 * 120.00235 * 2 1 3 33 33 H 1.07997 * 119.95372 * 359.95786 * 5 4 3 34 34 H 1.07997 * 119.94014 * 180.02562 * 6 5 4 35 35 H 1.07994 * 119.97539 * 180.27519 * 7 6 5 36 36 H 0.96996 * 120.00001 * 204.30263 * 9 8 7 37 37 H 1.09002 * 109.58707 * 353.37127 * 13 12 10 38 38 H 1.09002 * 109.58603 * 113.65475 * 13 12 10 39 39 H 1.08991 * 109.49828 * 65.31547 * 14 13 12 40 40 H 1.09000 * 109.49326 * 185.41479 * 14 13 12 41 41 H 1.08998 * 109.46107 * 181.38740 * 15 14 13 42 42 H 1.09001 * 109.46267 * 301.35649 * 15 14 13 43 43 H 0.96996 * 119.99524 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.58962 * 246.20299 * 26 12 10 45 45 H 1.09004 * 109.58754 * 6.62675 * 26 12 10 46 46 H 1.08001 * 120.06434 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1996 0.4249 0.0005 6 6 5.5695 0.6044 0.0005 7 6 6.1018 1.8795 -0.0047 8 6 5.2601 2.9842 0.0006 9 7 5.7991 4.2757 0.0002 10 6 7.0404 4.4876 -0.4803 11 8 7.7570 3.5434 -0.7507 12 7 7.4873 5.7462 -0.6609 13 6 6.6763 6.8964 -0.2386 14 6 6.5110 7.8466 -1.4288 15 6 7.8913 8.2177 -1.9757 16 6 8.6058 6.9546 -2.4617 17 1 8.0058 6.4709 -3.2325 18 6 9.9517 7.3250 -3.0296 19 1 10.2664 8.3581 -3.0432 20 6 10.7814 6.3450 -3.5319 21 7 10.3980 5.0870 -3.5158 22 14 12.4494 6.8042 -4.2365 23 1 13.2665 7.4621 -3.1856 24 1 13.1421 5.5781 -4.7078 25 1 12.2651 7.7374 -5.3768 26 6 8.7973 5.9941 -1.2781 27 6 3.8837 2.8058 0.0011 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.7864 -0.5729 0.0008 34 1 6.2256 -0.2535 0.0001 35 1 7.1729 2.0171 -0.0092 36 1 5.2810 5.0176 0.3493 37 1 5.6968 6.5511 0.0921 38 1 7.1762 7.4153 0.5793 39 1 5.9307 7.3546 -2.2093 40 1 5.9935 8.7494 -1.1044 41 1 7.7776 8.9132 -2.8072 42 1 8.4800 8.6872 -1.1876 43 1 10.9819 4.3976 -3.8688 44 1 9.4678 6.4425 -0.5450 45 1 9.2177 5.0533 -1.6335 46 1 3.2270 3.6632 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596693696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:30 Heat of formation + Delta-G solvation = -33.333438 kcal Electronic energy + Delta-G solvation = -26651.999533 eV Core-core repulsion = 22928.208456 eV Total energy + Delta-G solvation = -3723.791077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.60779 -39.69816 -37.82273 -36.57411 -34.42219 -33.27160 -32.15617 -31.83806 -30.05593 -29.62526 -28.74861 -25.14070 -24.83180 -23.81122 -22.64017 -21.94854 -21.55078 -20.14445 -18.91184 -18.41568 -17.66462 -16.26571 -16.24263 -16.19895 -15.85936 -15.33607 -14.90622 -14.77240 -14.37127 -13.84284 -13.66835 -13.61061 -13.44968 -13.37907 -12.89420 -12.74337 -12.60533 -12.43758 -12.17542 -12.03709 -11.94700 -11.69132 -11.02006 -11.01485 -10.93542 -10.84974 -10.55769 -10.43714 -10.27085 -10.13173 -9.92943 -9.24918 -9.13667 -8.97945 -8.44951 -8.33627 -7.97916 -7.59703 -6.00383 -4.09341 1.43983 1.64009 2.80007 3.27585 3.32927 3.38128 3.39241 3.56369 4.02314 4.20427 4.43017 4.67264 4.71184 4.93547 4.99341 5.12383 5.16924 5.21944 5.29615 5.42414 5.46062 5.49919 5.51091 5.60201 5.69452 5.75824 5.84469 5.92396 6.10033 6.26602 6.34155 6.39556 6.45423 6.57202 6.64507 6.76258 6.79925 6.93698 7.01047 7.12829 7.26287 7.37942 7.46677 7.69579 7.87191 8.01521 8.36846 8.38330 8.93319 9.02495 9.56307 11.04937 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.002814 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.751410 B = 9946.510871 C =10743.404869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.319 6.319 4 C 0.146 3.854 5 C -0.239 4.239 6 C -0.061 4.061 7 C -0.177 4.177 8 C 0.218 3.782 9 N -0.689 5.689 10 C 0.700 3.300 11 O -0.560 6.560 12 N -0.615 5.615 13 C 0.112 3.888 14 C -0.133 4.133 15 C -0.110 4.110 16 C 0.040 3.960 17 H 0.029 0.971 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.879 5.879 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.127 3.873 27 C -0.197 4.197 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.168 0.832 36 H 0.403 0.597 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.264 0.736 44 H 0.043 0.957 45 H 0.124 0.876 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.866 -6.071 9.709 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.100 3.900 5 C -0.259 4.259 6 C -0.080 4.080 7 C -0.197 4.197 8 C 0.120 3.880 9 N -0.337 5.337 10 C 0.403 3.597 11 O -0.437 6.437 12 N -0.351 5.351 13 C -0.012 4.012 14 C -0.172 4.172 15 C -0.148 4.148 16 C 0.021 3.979 17 H 0.048 0.952 18 C -0.561 4.561 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.517 5.517 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 C 0.007 3.993 27 C -0.219 4.219 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.185 0.815 36 H 0.241 0.759 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.142 0.858 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.348 -6.692 9.404 20.012 hybrid contribution 0.571 0.432 -0.262 0.762 sum -15.777 -6.260 9.142 19.279 Atomic orbital electron populations 1.21775 0.92962 1.02698 1.03462 1.22733 0.95577 0.82219 1.01423 1.86019 1.19286 1.29054 1.88949 1.18461 0.81887 0.93389 0.96231 1.21114 0.94515 0.97521 1.12702 1.20893 0.93920 0.97167 0.95989 1.22020 1.03236 0.90457 1.04006 1.17293 0.90764 0.84296 0.95631 1.42940 1.17204 1.08291 1.65276 1.15937 0.80837 0.84438 0.78533 1.90781 1.55794 1.40066 1.57056 1.47906 1.22015 1.02275 1.62861 1.21582 0.93999 0.88260 0.97401 1.21946 0.99655 0.98044 0.97530 1.21623 0.93569 1.00105 0.99512 1.19064 0.95694 0.90246 0.92924 0.95248 1.21027 1.01161 0.93575 1.40321 0.92379 1.25059 0.98358 0.95060 0.95540 1.69876 1.36893 0.99703 1.45188 0.86645 0.84061 0.77762 0.79464 1.20233 1.21254 1.20305 1.22386 0.78476 1.04747 0.93685 1.19806 0.93002 0.95551 1.13565 0.91607 0.91546 0.90504 0.92058 0.92124 0.86034 0.85708 0.81493 0.75943 0.92177 0.91642 0.92065 0.92126 0.92925 0.93096 0.92544 0.93873 0.85808 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.48 5.46 37.16 0.20 0.68 16 3 O -0.32 -3.89 10.13 -19.42 -0.20 -4.09 16 4 C 0.15 1.98 6.68 -39.24 -0.26 1.72 16 5 C -0.24 -3.04 9.04 -39.40 -0.36 -3.40 16 6 C -0.06 -0.85 10.03 -39.63 -0.40 -1.25 16 7 C -0.18 -2.98 8.88 -39.37 -0.35 -3.33 16 8 C 0.22 3.49 6.48 -83.71 -0.54 2.95 16 9 N -0.69 -10.94 5.26 -14.24 -0.07 -11.01 16 10 C 0.70 14.10 8.21 -86.92 -0.71 13.39 16 11 O -0.56 -13.38 12.55 5.29 0.07 -13.31 16 12 N -0.61 -12.07 2.97 -178.23 -0.53 -12.60 16 13 C 0.11 1.66 6.42 -3.71 -0.02 1.63 16 14 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 15 C -0.11 -2.13 5.10 -26.69 -0.14 -2.27 16 16 C 0.04 0.97 2.26 -91.43 -0.21 0.76 16 17 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 18 C -0.52 -13.96 8.56 -34.44 -0.29 -14.25 16 19 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 21 N -0.88 -25.46 11.41 55.43 0.63 -24.83 16 22 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.13 3.02 5.41 -3.49 -0.02 3.00 16 27 C -0.20 -2.79 9.88 -39.25 -0.39 -3.18 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 32 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 33 H 0.12 1.23 6.29 -52.49 -0.33 0.90 16 34 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.17 3.25 5.24 -52.56 -0.28 2.97 16 36 H 0.40 5.02 6.28 -40.82 -0.26 4.77 16 37 H 0.06 0.70 5.60 -51.93 -0.29 0.40 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.12 3.45 5.18 -51.93 -0.27 3.18 16 46 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -31.52 364.75 -9.82 -41.34 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.83 Total: 7.64 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -3.36 Total: -4.74 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.03 Total: -48.44 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.13 Total: -17.40 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.52 -9.82 -41.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596693696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.006 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds