Wall clock time and date at job start Tue Mar 31 2020 12:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42892 * 109.47080 * 2 1 4 4 C 1.35899 * 117.00127 * 179.97438 * 3 2 1 5 5 C 1.38805 * 120.02221 * 0.02600 * 4 3 2 6 6 C 1.38168 * 120.08710 * 179.97438 * 5 4 3 7 7 C 1.38175 * 120.12117 * 359.74520 * 6 5 4 8 8 C 1.38883 * 120.03885 * 0.50813 * 7 6 5 9 9 N 1.39943 * 120.03995 * 179.76503 * 8 7 6 10 10 C 1.34779 * 119.99933 * 24.03463 * 9 8 7 11 11 O 1.21585 * 119.99558 * 350.42536 * 10 9 8 12 12 N 1.34770 * 120.00325 * 170.42661 * 10 9 8 13 13 C 1.46934 * 120.62758 * 4.94105 * 12 10 9 14 14 C 1.53194 * 108.77214 * 233.58420 * 13 12 10 15 15 C 1.53040 * 109.31172 * 305.36378 * 14 13 12 16 16 C 1.53039 * 109.53848 * 61.36837 * 15 14 13 17 17 H 1.08995 * 109.50031 * 58.58325 * 16 15 14 18 18 C 1.50702 * 109.49826 * 178.68271 * 16 15 14 19 19 H 1.08007 * 119.99955 * 359.97438 * 18 16 15 20 20 C 1.37878 * 120.00097 * 179.97438 * 18 16 15 21 21 N 1.31517 * 119.99802 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00018 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46962 * 60.00064 * 22 20 18 24 24 H 1.48499 * 109.46980 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47320 * 300.00374 * 22 20 18 26 26 C 1.46920 * 120.63399 * 184.65675 * 12 10 9 27 27 C 1.38590 * 120.02031 * 180.02562 * 4 3 2 28 28 H 1.08993 * 109.47678 * 299.99751 * 1 2 3 29 29 H 1.08997 * 109.47074 * 60.00163 * 1 2 3 30 30 H 1.09008 * 109.46799 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47043 * 240.00209 * 2 1 3 32 32 H 1.09003 * 109.47278 * 120.00235 * 2 1 3 33 33 H 1.07997 * 119.95372 * 359.95786 * 5 4 3 34 34 H 1.07997 * 119.94014 * 180.02562 * 6 5 4 35 35 H 1.07994 * 119.97539 * 180.27519 * 7 6 5 36 36 H 0.96996 * 120.00001 * 204.30263 * 9 8 7 37 37 H 1.09002 * 109.58707 * 353.37127 * 13 12 10 38 38 H 1.09002 * 109.58603 * 113.65475 * 13 12 10 39 39 H 1.08991 * 109.49828 * 65.31547 * 14 13 12 40 40 H 1.09000 * 109.49326 * 185.41479 * 14 13 12 41 41 H 1.08998 * 109.46107 * 181.38740 * 15 14 13 42 42 H 1.09001 * 109.46267 * 301.35649 * 15 14 13 43 43 H 0.96996 * 119.99524 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.58962 * 246.20299 * 26 12 10 45 45 H 1.09004 * 109.58754 * 6.62675 * 26 12 10 46 46 H 1.08001 * 120.06434 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1996 0.4249 0.0005 6 6 5.5695 0.6044 0.0005 7 6 6.1018 1.8795 -0.0047 8 6 5.2601 2.9842 0.0006 9 7 5.7991 4.2757 0.0002 10 6 7.0404 4.4876 -0.4803 11 8 7.7570 3.5434 -0.7507 12 7 7.4873 5.7462 -0.6609 13 6 6.6763 6.8964 -0.2386 14 6 6.5110 7.8466 -1.4288 15 6 7.8913 8.2177 -1.9757 16 6 8.6058 6.9546 -2.4617 17 1 8.0058 6.4709 -3.2325 18 6 9.9517 7.3250 -3.0296 19 1 10.2664 8.3581 -3.0432 20 6 10.7814 6.3450 -3.5319 21 7 10.3980 5.0870 -3.5158 22 14 12.4494 6.8042 -4.2365 23 1 13.2665 7.4621 -3.1856 24 1 13.1421 5.5781 -4.7078 25 1 12.2651 7.7374 -5.3768 26 6 8.7973 5.9941 -1.2781 27 6 3.8837 2.8058 0.0011 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.7864 -0.5729 0.0008 34 1 6.2256 -0.2535 0.0001 35 1 7.1729 2.0171 -0.0092 36 1 5.2810 5.0176 0.3493 37 1 5.6968 6.5511 0.0921 38 1 7.1762 7.4153 0.5793 39 1 5.9307 7.3546 -2.2093 40 1 5.9935 8.7494 -1.1044 41 1 7.7776 8.9132 -2.8072 42 1 8.4800 8.6872 -1.1876 43 1 10.9819 4.3976 -3.8688 44 1 9.4678 6.4425 -0.5450 45 1 9.2177 5.0533 -1.6335 46 1 3.2270 3.6632 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596693696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:30 Heat of formation + Delta-G solvation = -52.037852 kcal Electronic energy + Delta-G solvation = -26652.810617 eV Core-core repulsion = 22928.208456 eV Total energy + Delta-G solvation = -3724.602162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.95703 -40.83190 -39.11690 -37.97331 -35.88687 -35.06260 -33.48483 -32.85935 -31.60059 -30.84431 -29.92286 -27.06106 -26.28073 -24.72514 -23.77360 -23.51447 -22.69641 -21.58368 -20.43279 -19.60652 -19.07180 -18.22843 -17.42211 -17.02077 -16.92360 -16.69492 -16.58594 -16.24836 -15.94242 -15.24662 -15.17673 -14.76298 -14.49801 -14.41473 -14.35395 -14.21026 -13.92309 -13.61746 -13.33462 -13.20085 -13.05893 -12.85155 -12.69046 -12.67384 -12.29658 -12.24621 -11.88123 -11.84309 -11.74150 -11.63939 -11.33763 -11.03823 -10.93315 -10.68802 -10.50450 -9.60676 -9.35907 -8.87380 -8.10047 -6.26964 0.30989 0.50191 1.41028 1.42412 1.49613 1.51649 2.08519 2.30178 2.42684 2.84207 2.90612 3.18901 3.87016 3.97441 4.09324 4.10831 4.12935 4.18760 4.23715 4.36054 4.38724 4.42914 4.57309 4.58365 4.64670 4.73903 4.78247 4.82555 4.93204 4.98732 5.09653 5.18040 5.21790 5.25632 5.29098 5.32151 5.34161 5.39738 5.52285 5.59893 5.67770 5.87602 5.93825 5.95418 6.10892 6.34500 6.48179 6.85315 6.95418 7.42711 7.49725 8.93213 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.002814 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.751410 B = 9946.510871 C =10743.404869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.327 6.327 4 C 0.145 3.855 5 C -0.229 4.229 6 C -0.063 4.063 7 C -0.207 4.207 8 C 0.198 3.802 9 N -0.670 5.670 10 C 0.694 3.306 11 O -0.608 6.608 12 N -0.619 5.619 13 C 0.105 3.895 14 C -0.125 4.125 15 C -0.105 4.105 16 C 0.038 3.962 17 H -0.015 1.015 18 C -0.536 4.536 19 H 0.063 0.937 20 C 0.009 3.991 21 N -0.915 5.915 22 Si 0.957 3.043 23 H -0.266 1.266 24 H -0.290 1.290 25 H -0.269 1.269 26 C 0.142 3.858 27 C -0.195 4.195 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.153 0.847 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.420 0.580 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.106 0.894 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.259 0.741 44 H 0.039 0.961 45 H 0.077 0.923 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.398 -5.401 10.885 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.242 6.242 4 C 0.099 3.901 5 C -0.249 4.249 6 C -0.081 4.081 7 C -0.228 4.228 8 C 0.101 3.899 9 N -0.320 5.320 10 C 0.396 3.604 11 O -0.488 6.488 12 N -0.354 5.354 13 C -0.017 4.017 14 C -0.163 4.163 15 C -0.143 4.143 16 C 0.019 3.981 17 H 0.004 0.996 18 C -0.574 4.574 19 H 0.081 0.919 20 C -0.190 4.190 21 N -0.553 5.553 22 Si 0.782 3.218 23 H -0.191 1.191 24 H -0.216 1.216 25 H -0.194 1.194 26 C 0.020 3.980 27 C -0.217 4.217 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.171 0.829 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.261 0.739 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.125 0.875 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.096 0.904 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.950 -5.984 10.611 22.528 hybrid contribution 1.234 0.129 -0.615 1.385 sum -17.716 -5.855 9.996 21.167 Atomic orbital electron populations 1.21807 0.91383 1.04183 1.03195 1.23097 0.96890 0.80683 1.02428 1.86029 1.18149 1.31465 1.88536 1.18606 0.82846 0.93343 0.95295 1.21414 0.93651 0.98963 1.10848 1.21090 0.95090 0.96579 0.95361 1.21865 1.01925 0.92418 1.06598 1.17420 0.91590 0.83832 0.97066 1.42572 1.15647 1.09140 1.64592 1.16139 0.81777 0.83985 0.78486 1.90777 1.57463 1.41632 1.58915 1.47783 1.21307 1.03712 1.62608 1.21969 0.95395 0.86650 0.97703 1.21903 0.97205 0.99948 0.97282 1.21514 0.95611 0.97320 0.99862 1.18995 0.94671 0.92455 0.91980 0.99648 1.21485 1.02286 0.93718 1.39916 0.91862 1.25901 1.02106 0.94897 0.96103 1.70084 1.38084 1.00735 1.46412 0.85626 0.79729 0.77357 0.79060 1.19117 1.21598 1.19378 1.21768 0.80531 1.02167 0.93576 1.19946 0.92117 0.96847 1.12798 0.91657 0.92035 0.88150 0.91321 0.90764 0.82932 0.83947 0.84880 0.73894 0.88256 0.89541 0.93237 0.87528 0.92944 0.92168 0.93160 0.94225 0.90446 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.04 0.61 5.46 71.98 0.39 1.01 16 3 O -0.33 -7.14 10.13 -92.41 -0.94 -8.08 16 4 C 0.15 3.64 6.68 22.49 0.15 3.79 16 5 C -0.23 -5.39 9.04 22.39 0.20 -5.18 16 6 C -0.06 -1.74 10.03 22.24 0.22 -1.52 16 7 C -0.21 -7.29 8.88 22.41 0.20 -7.09 16 8 C 0.20 6.35 6.48 38.13 0.25 6.60 16 9 N -0.67 -21.15 5.26 -317.23 -1.67 -22.82 16 10 C 0.69 28.99 8.21 179.06 1.47 30.46 16 11 O -0.61 -31.25 12.55 -3.98 -0.05 -31.30 16 12 N -0.62 -24.69 2.97 -836.05 -2.48 -27.17 16 13 C 0.10 2.86 6.42 86.36 0.55 3.41 16 14 C -0.13 -3.56 6.08 30.67 0.19 -3.38 16 15 C -0.11 -3.98 5.10 30.62 0.16 -3.82 16 16 C 0.04 1.93 2.26 -11.32 -0.03 1.90 16 17 H -0.01 -0.86 8.14 -2.39 -0.02 -0.87 16 18 C -0.54 -29.39 8.56 25.60 0.22 -29.18 16 19 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 20 C 0.01 0.53 5.30 84.65 0.45 0.98 16 21 N -0.91 -55.95 11.41 21.45 0.24 -55.71 16 22 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 C 0.14 7.07 5.41 86.51 0.47 7.54 16 27 C -0.20 -5.23 9.88 22.49 0.22 -5.01 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 32 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 33 H 0.15 2.57 6.29 -2.91 -0.02 2.55 16 34 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.13 5.66 5.24 -4.00 -0.02 5.63 16 36 H 0.42 9.66 6.28 -92.71 -0.58 9.08 16 37 H 0.10 1.93 5.60 -2.39 -0.01 1.92 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.08 4.63 5.18 -2.38 -0.01 4.62 16 46 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -74.90 364.75 3.39 -71.51 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.40 Total: 27.39 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 5.85 Total: -0.23 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -3.90 Total: -105.70 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.99 Total: -39.38 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -74.90 3.39 -71.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596693696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.471 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds