Wall clock time and date at job start Tue Mar 31 2020 12:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35435 * 116.99755 * 179.97438 * 3 2 1 5 5 N 1.32234 * 119.79897 * 359.72719 * 4 3 2 6 6 C 1.31885 * 121.79456 * 179.74676 * 5 4 3 7 7 C 1.38351 * 121.18965 * 0.53557 * 6 5 4 8 8 C 1.38345 * 119.45696 * 359.73503 * 7 6 5 9 9 C 1.50694 * 120.82462 * 180.02562 * 8 7 6 10 10 C 1.39989 * 118.34648 * 0.02562 * 8 7 6 11 11 C 1.47525 * 120.59389 * 179.97438 * 10 8 7 12 12 O 1.21591 * 119.99726 * 270.01736 * 11 10 8 13 13 N 1.34775 * 120.00129 * 90.02179 * 11 10 8 14 14 C 1.46923 * 120.62951 * 359.71834 * 13 11 10 15 15 C 1.53634 * 108.54199 * 126.36954 * 14 13 11 16 16 C 1.53036 * 109.24137 * 54.85325 * 15 14 13 17 17 C 1.53036 * 109.54179 * 298.51293 * 16 15 14 18 18 H 1.08998 * 109.49541 * 301.41585 * 17 16 15 19 19 C 1.50701 * 109.50154 * 181.31639 * 17 16 15 20 20 H 1.08004 * 119.99270 * 0.16087 * 19 17 16 21 21 C 1.37868 * 120.00438 * 180.16337 * 19 17 16 22 22 N 1.31518 * 119.99974 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 120.00454 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47163 * 89.99644 * 23 21 19 25 25 H 1.48496 * 109.47106 * 210.00026 * 23 21 19 26 26 H 1.48504 * 109.46574 * 329.99780 * 23 21 19 27 27 C 1.46925 * 120.63179 * 179.97438 * 13 11 10 28 28 H 1.08996 * 109.47090 * 300.00216 * 1 2 3 29 29 H 1.08999 * 109.47084 * 60.00043 * 1 2 3 30 30 H 1.08994 * 109.47194 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47592 * 239.99856 * 2 1 3 32 32 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 33 33 H 1.08001 * 119.40335 * 180.24497 * 6 5 4 34 34 H 1.07996 * 120.27530 * 179.76517 * 7 6 5 35 35 H 1.09009 * 109.46735 * 269.97628 * 9 8 7 36 36 H 1.08994 * 109.47537 * 29.97456 * 9 8 7 37 37 H 1.09000 * 109.47072 * 149.97813 * 9 8 7 38 38 H 1.08992 * 109.58907 * 246.19841 * 14 13 11 39 39 H 1.08993 * 109.58915 * 6.63050 * 14 13 11 40 40 H 1.08999 * 109.63047 * 294.86501 * 15 14 13 41 41 H 1.08999 * 109.45795 * 174.73907 * 15 14 13 42 42 H 1.08994 * 109.45930 * 178.48896 * 16 15 14 43 43 H 1.09004 * 109.46102 * 58.53300 * 16 15 14 44 44 H 0.96999 * 119.99810 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.58661 * 353.37134 * 27 13 11 46 46 H 1.08997 * 109.59152 * 113.65250 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3490 1.5247 0.0005 5 7 4.1508 0.4732 0.0065 6 6 5.4635 0.6003 0.0023 7 6 6.0626 1.8474 0.0025 8 6 5.2714 2.9822 0.0016 9 6 5.8913 4.3558 0.0011 10 6 3.8806 2.8229 0.0010 11 6 2.9901 3.9990 0.0006 12 8 2.6230 4.4839 1.0535 13 7 2.5834 4.5360 -1.1667 14 6 3.0234 3.9649 -2.4469 15 6 1.7816 3.6617 -3.2992 16 6 0.9401 4.9328 -3.4344 17 6 0.4741 5.3879 -2.0496 18 1 -0.1059 4.5927 -1.5815 19 6 -0.3812 6.6212 -2.1868 20 1 -0.5755 7.0375 -3.1643 21 6 -0.9154 7.2180 -1.0647 22 7 -0.6791 6.7107 0.1255 23 14 -1.9761 8.7462 -1.2348 24 1 -3.3974 8.3470 -1.3951 25 1 -1.8321 9.5866 -0.0190 26 1 -1.5419 9.5200 -2.4256 27 6 1.6961 5.7069 -1.1833 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 6.0819 -0.2851 0.0034 34 1 7.1390 1.9343 0.0028 35 1 6.0399 4.6876 1.0288 36 1 6.8523 4.3205 -0.5118 37 1 5.2300 5.0527 -0.5137 38 1 3.6606 4.6804 -2.9665 39 1 3.5771 3.0439 -2.2651 40 1 1.1893 2.8827 -2.8192 41 1 2.0931 3.3248 -4.2878 42 1 0.0719 4.7286 -4.0608 43 1 1.5408 5.7190 -3.8919 44 1 -1.0553 7.1304 0.9150 45 1 1.3739 5.9357 -0.1674 46 1 2.2279 6.5626 -1.5993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:50 Heat of formation + Delta-G solvation = -47.602927 kcal Electronic energy + Delta-G solvation = -28262.529125 eV Core-core repulsion = 24538.119276 eV Total energy + Delta-G solvation = -3724.409849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.91880 -38.99144 -38.05371 -36.56802 -33.93088 -33.23972 -32.09768 -31.61454 -30.14976 -29.56079 -28.09589 -25.30049 -24.93234 -23.54578 -23.29669 -21.78670 -21.57404 -19.95123 -18.48411 -18.00713 -17.04439 -17.00059 -16.29104 -16.02461 -15.46232 -15.02428 -14.52308 -14.27193 -14.04650 -13.81121 -13.63770 -13.42063 -13.17864 -13.11451 -12.79792 -12.59345 -12.50728 -12.47866 -12.15708 -12.07438 -11.85743 -11.78166 -11.43237 -10.97340 -10.91744 -10.70566 -10.47204 -10.37769 -10.19960 -9.97055 -9.85835 -9.55681 -9.21566 -9.08314 -8.85270 -8.42997 -8.38304 -7.70307 -5.95945 -4.05152 0.96341 1.21697 3.01737 3.19943 3.32759 3.40019 3.42161 3.58907 3.81513 4.25508 4.45447 4.61997 4.87059 4.91077 5.05415 5.06922 5.14234 5.33375 5.35620 5.38908 5.40806 5.47690 5.53572 5.55821 5.69179 5.72444 5.82076 5.92070 5.94156 6.01844 6.16785 6.20571 6.23151 6.35026 6.39518 6.64160 6.71406 6.88826 7.01649 7.18298 7.30625 7.32579 7.67527 7.77619 7.91734 8.03783 8.28019 8.42194 8.88015 8.99593 9.60332 11.09108 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.004489 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.796935 B = 6235.923107 C = 6859.999884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.069 3.931 3 O -0.290 6.290 4 C 0.356 3.644 5 N -0.545 5.545 6 C 0.147 3.853 7 C -0.218 4.218 8 C 0.020 3.980 9 C -0.122 4.122 10 C -0.185 4.185 11 C 0.568 3.432 12 O -0.527 6.527 13 N -0.594 5.594 14 C 0.114 3.886 15 C -0.132 4.132 16 C -0.109 4.109 17 C 0.041 3.959 18 H 0.030 0.970 19 C -0.521 4.521 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.879 5.879 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.113 3.887 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.160 0.840 34 H 0.140 0.860 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.263 0.737 45 H 0.123 0.877 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.130 -12.781 -2.968 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.007 4.007 3 O -0.196 6.196 4 C 0.176 3.824 5 N -0.270 5.270 6 C -0.009 4.009 7 C -0.238 4.238 8 C 0.012 3.988 9 C -0.178 4.178 10 C -0.191 4.191 11 C 0.353 3.647 12 O -0.403 6.403 13 N -0.326 5.326 14 C -0.010 4.010 15 C -0.170 4.170 16 C -0.147 4.147 17 C 0.022 3.978 18 H 0.048 0.952 19 C -0.559 4.559 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.007 4.007 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.177 0.823 34 H 0.158 0.842 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.141 0.859 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.239 -13.097 -2.202 18.060 hybrid contribution -0.126 1.221 -0.095 1.231 sum 12.113 -11.876 -2.297 17.119 Atomic orbital electron populations 1.21822 0.92762 1.02522 1.04135 1.22630 0.95142 0.80799 1.02089 1.86368 1.16076 1.30660 1.86447 1.19704 0.84421 0.88381 0.89863 1.67382 1.06538 1.32396 1.20681 1.22458 0.89170 0.97239 0.91986 1.21739 1.01119 0.92478 1.08480 1.20171 0.90564 0.96927 0.91151 1.20910 1.01061 0.92149 1.03729 1.19993 0.94337 0.93092 1.11675 1.17690 0.80194 0.82358 0.84498 1.90813 1.56593 1.62027 1.30880 1.48441 1.48118 1.31959 1.04106 1.21640 0.96551 0.97518 0.85292 1.22000 0.96867 0.99906 0.98230 1.21619 0.97918 0.94723 1.00443 1.18945 0.92408 0.96869 0.89567 0.95202 1.21072 1.30610 1.11256 0.92999 0.92397 1.25051 0.96178 0.97331 0.95420 1.69898 1.44074 1.39915 0.97760 0.86612 0.80807 0.83153 0.77539 1.20711 1.21208 1.19927 1.22307 0.89049 0.82807 1.06497 0.91340 0.91270 0.90459 0.91699 0.91757 0.82268 0.84247 0.89671 0.90390 0.90488 0.92043 0.91906 0.92035 0.92462 0.93048 0.93225 0.92667 0.85905 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 10.28 37.16 0.38 -1.54 16 2 C 0.07 0.94 6.03 37.16 0.22 1.17 16 3 O -0.29 -5.26 9.57 -18.00 -0.17 -5.43 16 4 C 0.36 6.09 7.38 -16.61 -0.12 5.97 16 5 N -0.55 -7.83 9.21 -12.98 -0.12 -7.95 16 6 C 0.15 1.63 11.17 -17.49 -0.20 1.44 16 7 C -0.22 -2.34 9.79 -39.50 -0.39 -2.72 16 8 C 0.02 0.27 5.95 -103.93 -0.62 -0.35 16 9 C -0.12 -1.46 9.69 36.00 0.35 -1.11 16 10 C -0.18 -3.26 3.65 -104.69 -0.38 -3.64 16 11 C 0.57 12.29 5.31 -12.48 -0.07 12.22 16 12 O -0.53 -13.75 16.52 5.29 0.09 -13.67 16 13 N -0.59 -12.46 2.97 -173.76 -0.52 -12.98 16 14 C 0.11 1.93 6.37 -3.48 -0.02 1.90 16 15 C -0.13 -2.26 6.10 -26.38 -0.16 -2.43 16 16 C -0.11 -2.22 5.10 -26.69 -0.14 -2.36 16 17 C 0.04 1.03 2.25 -91.67 -0.21 0.83 16 18 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 19 C -0.52 -14.19 8.56 -34.44 -0.29 -14.49 16 20 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 21 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 22 N -0.88 -25.93 11.39 55.43 0.63 -25.30 16 23 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.11 2.79 5.40 -3.73 -0.02 2.77 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 36 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.08 1.08 7.19 -51.93 -0.37 0.70 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.98 6.23 -51.93 -0.32 0.66 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.12 3.54 5.12 -51.93 -0.27 3.28 16 46 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -33.39 373.41 -8.50 -41.89 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.26 Total: 2.15 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.75 Total: -0.67 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.00 Total: -46.23 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.08 Total: -19.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.39 -8.50 -41.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.718 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds