Wall clock time and date at job start Tue Mar 31 2020 12:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47356 * 2 1 4 4 C 1.42905 * 113.99949 * 182.42051 * 3 2 1 5 5 H 1.09000 * 109.47199 * 340.77337 * 4 3 2 6 6 C 1.50699 * 109.47028 * 220.77740 * 4 3 2 7 7 O 1.21285 * 120.00143 * 349.67885 * 6 4 3 8 8 N 1.34776 * 120.00112 * 169.69128 * 6 4 3 9 9 C 1.46508 * 119.99636 * 4.70410 * 8 6 4 10 10 C 1.50701 * 109.46982 * 268.45128 * 9 8 6 11 11 H 1.07995 * 120.00308 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99649 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00253 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99925 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46815 * 89.99827 * 14 12 10 16 16 H 1.48500 * 109.47219 * 209.99944 * 14 12 10 17 17 H 1.48496 * 109.46991 * 329.99910 * 14 12 10 18 18 C 1.46493 * 120.00214 * 184.71397 * 8 6 4 19 19 C 1.50701 * 109.46918 * 269.99217 * 18 8 6 20 20 C 1.38237 * 119.61771 * 95.01682 * 19 18 8 21 21 C 1.38625 * 119.15987 * 179.70208 * 20 19 18 22 22 C 1.38674 * 118.42269 * 0.52224 * 21 20 19 23 23 C 1.38184 * 119.15850 * 359.50334 * 22 21 20 24 24 N 1.31848 * 119.62307 * 275.00170 * 19 18 8 25 25 C 1.52995 * 109.47009 * 100.77273 * 4 3 2 26 26 C 1.53002 * 117.49968 * 8.99889 * 25 4 3 27 27 C 1.53003 * 117.50107 * 300.33393 * 25 4 3 28 28 H 1.09005 * 109.47383 * 300.00062 * 1 2 3 29 29 H 1.09007 * 109.47198 * 59.99518 * 1 2 3 30 30 H 1.08995 * 109.47725 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46649 * 239.99868 * 2 1 3 32 32 H 1.09004 * 109.46716 * 120.00316 * 2 1 3 33 33 H 1.08998 * 109.47204 * 28.44827 * 9 8 6 34 34 H 1.08998 * 109.46423 * 148.45263 * 9 8 6 35 35 H 0.97002 * 120.00553 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47489 * 149.99779 * 18 8 6 37 37 H 1.09002 * 109.47608 * 29.98881 * 18 8 6 38 38 H 1.08002 * 120.41526 * 359.96123 * 20 19 18 39 39 H 1.08003 * 120.79098 * 180.27841 * 21 20 19 40 40 H 1.08001 * 120.41964 * 179.78063 * 22 21 20 41 41 H 1.07999 * 119.61164 * 180.25262 * 23 22 21 42 42 H 1.09003 * 115.55037 * 154.66688 * 25 4 3 43 43 H 1.08994 * 117.50027 * 359.97438 * 26 25 4 44 44 H 1.09003 * 117.49852 * 145.02224 * 26 25 4 45 45 H 1.08993 * 117.49847 * 214.97892 * 27 25 4 46 46 H 1.08996 * 117.49627 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4298 1.4604 -0.0551 5 1 3.8815 0.5172 0.2523 6 6 3.8826 2.5595 0.8711 7 8 3.0675 3.3060 1.3704 8 7 5.1934 2.7132 1.1445 9 6 6.1865 1.8794 0.4625 10 6 6.4528 0.6433 1.2824 11 1 5.9346 0.4939 2.2181 12 6 7.3589 -0.2963 0.8386 13 7 7.9903 -0.1142 -0.3006 14 14 7.6896 -1.8282 1.8552 15 1 6.7507 -2.9044 1.4484 16 1 9.0866 -2.2791 1.6310 17 1 7.4943 -1.5188 3.2944 18 6 5.6251 3.7137 2.1236 19 6 5.8756 5.0251 1.4246 20 6 4.8750 5.9780 1.3810 21 6 5.1178 7.1834 0.7409 22 6 6.3596 7.3821 0.1565 23 6 7.3106 6.3830 0.2400 24 7 7.0465 5.2505 0.8620 25 6 3.8602 1.7894 -1.4860 26 6 2.7612 2.1381 -2.4918 27 6 3.4847 0.7921 -2.5838 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8069 1.5904 -0.5175 34 1 7.1122 2.4421 0.3423 35 1 8.6275 -0.7754 -0.6131 36 1 6.5432 3.3778 2.6056 37 1 4.8471 3.8456 2.8755 38 1 3.9178 5.7873 1.8434 39 1 4.3565 7.9481 0.6950 40 1 6.5822 8.3077 -0.3535 41 1 8.2815 6.5316 -0.2089 42 1 4.8138 2.3086 -1.5824 43 1 1.7316 2.1325 -2.1342 44 1 2.9920 2.8862 -3.2502 45 1 4.1909 0.6554 -3.4026 46 1 2.9313 -0.0987 -2.2865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599325759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:05 Heat of formation + Delta-G solvation = -28.890343 kcal Electronic energy + Delta-G solvation = -27865.444171 eV Core-core repulsion = 24141.845761 eV Total energy + Delta-G solvation = -3723.598410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.56806 -40.81885 -39.16929 -37.16087 -36.58159 -34.70155 -33.39620 -32.97584 -32.23211 -29.65248 -29.15329 -26.97375 -25.00635 -24.33907 -24.00105 -23.19294 -22.96982 -21.99708 -20.41030 -18.72217 -18.08735 -17.99626 -17.68142 -17.29216 -17.04554 -16.59972 -16.44325 -16.31980 -15.97550 -15.57047 -15.13063 -14.77956 -14.37711 -14.24767 -14.14968 -13.92307 -13.78666 -13.54892 -13.34577 -13.08586 -13.03173 -12.76665 -12.63992 -12.57880 -12.50550 -12.25626 -12.10574 -12.02502 -11.73073 -11.51363 -11.18169 -10.80815 -10.75099 -10.57004 -10.40987 -10.28912 -9.91290 -9.50615 -8.17951 -6.32332 0.13330 0.39818 1.40591 1.42900 1.51975 1.63088 1.96293 2.40734 2.73912 2.95268 3.07025 3.12513 3.36464 3.60544 3.73148 3.83127 3.95702 4.02682 4.12973 4.16608 4.20181 4.25963 4.26545 4.34857 4.41820 4.50502 4.56474 4.59457 4.75979 4.78492 4.83675 4.87441 4.90460 4.97595 5.04165 5.16406 5.23978 5.26818 5.27263 5.28850 5.31491 5.61859 5.77023 5.82551 6.07134 6.13860 6.52137 6.79848 7.12296 7.24279 7.39477 8.87913 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008206 B = 0.006203 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3411.194990 B = 4512.810124 C = 6626.690449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.040 3.960 3 O -0.370 6.370 4 C 0.120 3.880 5 H 0.086 0.914 6 C 0.515 3.485 7 O -0.571 6.571 8 N -0.585 5.585 9 C 0.245 3.755 10 C -0.549 4.549 11 H 0.052 0.948 12 C 0.026 3.974 13 N -0.915 5.915 14 Si 0.953 3.047 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.273 1.273 18 C 0.168 3.832 19 C 0.095 3.905 20 C -0.160 4.160 21 C -0.079 4.079 22 C -0.163 4.163 23 C 0.079 3.921 24 N -0.504 5.504 25 C -0.191 4.191 26 C -0.150 4.150 27 C -0.158 4.158 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.018 0.982 35 H 0.267 0.733 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.165 0.835 40 H 0.173 0.827 41 H 0.175 0.825 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.504 7.448 -3.116 11.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.037 4.037 3 O -0.289 6.289 4 C 0.059 3.941 5 H 0.104 0.896 6 C 0.303 3.697 7 O -0.451 6.451 8 N -0.316 5.316 9 C 0.124 3.876 10 C -0.588 4.588 11 H 0.070 0.930 12 C -0.175 4.175 13 N -0.553 5.553 14 Si 0.778 3.222 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.197 1.197 18 C 0.044 3.956 19 C -0.042 4.042 20 C -0.181 4.181 21 C -0.105 4.105 22 C -0.182 4.182 23 C -0.078 4.078 24 N -0.214 5.214 25 C -0.210 4.210 26 C -0.186 4.186 27 C -0.195 4.195 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.149 0.851 39 H 0.183 0.817 40 H 0.190 0.810 41 H 0.192 0.808 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.271 7.238 -2.912 11.370 hybrid contribution 0.393 -0.546 0.604 0.904 sum -7.878 6.691 -2.308 10.591 Atomic orbital electron populations 1.21714 0.91513 1.03585 1.02907 1.22952 0.97253 0.82830 1.00623 1.87931 1.18444 1.27878 1.94645 1.21052 0.82657 0.97389 0.93039 0.89586 1.20693 0.82061 0.85245 0.81688 1.90541 1.53415 1.46684 1.54482 1.48084 1.06187 1.35883 1.41459 1.19385 0.86727 0.88472 0.92993 1.21645 1.24652 1.05427 1.07068 0.92972 1.25599 0.95058 1.00866 0.95962 1.70021 1.27367 1.36630 1.21328 0.85630 0.77637 0.79759 0.79133 1.19535 1.20688 1.19742 1.20155 1.00934 0.84214 0.90252 1.21566 0.89970 0.96026 0.96680 1.22145 0.99818 0.94958 1.01142 1.21975 0.97981 0.96469 0.94051 1.22521 0.93737 1.01613 1.00366 1.23284 1.00954 0.88448 0.95107 1.67487 1.21837 1.23309 1.08807 1.22572 1.00399 1.07845 0.90157 1.22949 0.97374 0.98514 0.99807 1.23065 1.03169 0.93764 0.99485 0.92612 0.91453 0.88650 0.92002 0.93874 0.93551 0.96397 0.92374 0.89823 0.89100 0.85066 0.81726 0.80952 0.80795 0.88495 0.87776 0.87929 0.87827 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 10.28 71.98 0.74 -2.34 16 2 C 0.04 1.13 6.29 71.98 0.45 1.59 16 3 O -0.37 -13.60 7.90 -130.15 -1.03 -14.63 16 4 C 0.12 4.82 2.18 29.85 0.07 4.89 16 5 H 0.09 3.72 7.02 -2.39 -0.02 3.70 16 6 C 0.51 23.04 7.03 87.66 0.62 23.66 16 7 O -0.57 -26.88 15.93 15.79 0.25 -26.63 16 8 N -0.59 -26.42 2.44 -830.50 -2.03 -28.45 16 9 C 0.24 12.28 4.66 85.63 0.40 12.68 16 10 C -0.55 -29.23 8.93 25.60 0.23 -29.00 16 11 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 12 C 0.03 1.38 5.46 84.65 0.46 1.84 16 13 N -0.91 -50.88 13.29 21.45 0.28 -50.59 16 14 Si 0.95 42.03 29.54 68.60 2.03 44.06 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 C 0.17 6.92 5.69 85.63 0.49 7.41 16 19 C 0.10 3.61 6.36 42.56 0.27 3.88 16 20 C -0.16 -5.19 9.72 22.36 0.22 -4.97 16 21 C -0.08 -1.94 10.18 22.47 0.23 -1.71 16 22 C -0.16 -3.66 10.11 22.36 0.23 -3.43 16 23 C 0.08 2.27 11.18 84.67 0.95 3.22 16 24 N -0.50 -19.07 10.27 -183.88 -1.89 -20.96 16 25 C -0.19 -7.05 4.57 -10.79 -0.05 -7.10 16 26 C -0.15 -4.47 9.88 30.62 0.30 -4.17 16 27 C -0.16 -4.74 10.07 30.62 0.31 -4.43 16 28 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.62 5.85 -2.38 -0.01 1.60 16 32 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.05 2.38 4.24 -2.39 -0.01 2.36 16 34 H 0.02 1.00 8.08 -2.39 -0.02 0.98 16 35 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.08 3.56 8.07 -2.39 -0.02 3.54 16 37 H 0.09 3.56 7.39 -2.39 -0.02 3.54 16 38 H 0.13 4.34 7.83 -2.91 -0.02 4.32 16 39 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 42 H 0.10 4.04 6.19 -2.39 -0.01 4.03 16 43 H 0.10 3.11 7.07 -2.39 -0.02 3.09 16 44 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 45 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 46 H 0.10 2.82 5.87 -2.39 -0.01 2.81 16 Total: -1.00 -66.98 380.04 4.50 -62.48 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.98 Total: 32.72 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 5.90 Total: 2.00 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -3.63 Total: -100.00 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.78 Total: -41.26 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -66.98 4.50 -62.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599325759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.591 kcal (2) G-P(sol) polarization free energy of solvation -66.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds