Wall clock time and date at job start Tue Mar 31 2020 12:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42894 * 109.47045 * 2 1 4 4 C 1.42904 * 114.00088 * 184.81968 * 3 2 1 5 5 H 1.08992 * 109.47384 * 329.54850 * 4 3 2 6 6 C 1.50705 * 109.46709 * 89.54637 * 4 3 2 7 7 O 1.21284 * 119.99971 * 5.00191 * 6 4 3 8 8 N 1.34778 * 119.99907 * 185.00005 * 6 4 3 9 9 C 1.46499 * 119.99910 * 0.02562 * 8 6 4 10 10 C 1.50706 * 109.47160 * 269.99830 * 9 8 6 11 11 H 1.08006 * 119.99757 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00322 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99467 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00206 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47144 * 90.00353 * 14 12 10 16 16 H 1.48501 * 109.47250 * 210.00089 * 14 12 10 17 17 H 1.48501 * 109.47390 * 330.00245 * 14 12 10 18 18 C 1.46497 * 120.00096 * 180.02562 * 8 6 4 19 19 C 1.50702 * 109.47116 * 89.99986 * 18 8 6 20 20 C 1.38227 * 119.61772 * 95.02730 * 19 18 8 21 21 C 1.38624 * 119.15774 * 179.74962 * 20 19 18 22 22 C 1.38676 * 118.42459 * 0.46193 * 21 20 19 23 23 C 1.38178 * 119.15801 * 359.51611 * 22 21 20 24 24 N 1.31862 * 119.61801 * 274.99816 * 19 18 8 25 25 C 1.52998 * 109.47409 * 209.54321 * 4 3 2 26 26 C 1.53000 * 117.49654 * 121.69030 * 25 4 3 27 27 C 1.53002 * 117.49704 * 53.03455 * 25 4 3 28 28 H 1.09006 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47116 * 299.99617 * 1 2 3 30 30 H 1.08990 * 109.47711 * 59.99786 * 1 2 3 31 31 H 1.09001 * 109.47116 * 240.00383 * 2 1 3 32 32 H 1.09001 * 109.47242 * 120.00095 * 2 1 3 33 33 H 1.08996 * 109.47310 * 29.99488 * 9 8 6 34 34 H 1.08998 * 109.47169 * 149.99968 * 9 8 6 35 35 H 0.97005 * 119.99296 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.46899 * 330.00287 * 18 8 6 37 37 H 1.08998 * 109.47067 * 210.00174 * 18 8 6 38 38 H 1.07998 * 120.41743 * 359.94762 * 20 19 18 39 39 H 1.08007 * 120.78625 * 180.23068 * 21 20 19 40 40 H 1.07992 * 120.41753 * 179.78196 * 22 21 20 41 41 H 1.08005 * 119.61329 * 180.25027 * 23 22 21 42 42 H 1.08999 * 115.55629 * 267.36640 * 25 4 3 43 43 H 1.08996 * 117.49822 * 0.02562 * 26 25 4 44 44 H 1.09004 * 117.49738 * 145.01741 * 26 25 4 45 45 H 1.08999 * 117.49915 * 214.97862 * 27 25 4 46 46 H 1.08996 * 117.49671 * 0.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3472 0.0000 4 6 3.4264 1.4616 -0.1097 5 1 3.8976 0.5935 0.3511 6 6 3.8139 1.5304 -1.5644 7 8 2.9548 1.5774 -2.4193 8 7 5.1151 1.5398 -1.9155 9 6 6.1528 1.4825 -0.8830 10 6 6.5174 2.8820 -0.4590 11 1 6.0249 3.7293 -0.9129 12 6 7.4794 3.0807 0.5084 13 7 8.0793 2.0489 1.0608 14 14 7.9317 4.8154 1.0335 15 1 7.0637 5.2326 2.1639 16 1 9.3530 4.8479 1.4626 17 1 7.7381 5.7446 -0.1086 18 6 5.4918 1.6072 -3.3296 19 6 5.6297 3.0494 -3.7445 20 6 6.8742 3.6505 -3.7231 21 6 6.9909 4.9760 -4.1117 22 6 5.8448 5.6535 -4.4998 23 6 4.6347 4.9864 -4.4961 24 7 4.5617 3.7232 -4.1244 25 6 3.8923 2.7330 0.6028 26 6 4.9059 2.5755 1.7379 27 6 3.4512 2.9312 2.0544 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8898 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.7788 0.9280 -0.0224 34 1 7.0352 0.9824 -1.2820 35 1 8.7559 2.1887 1.7417 36 1 4.7220 1.1273 -3.9339 37 1 6.4421 1.0942 -3.4773 38 1 7.7451 3.0935 -3.4106 39 1 7.9511 5.4706 -4.1086 40 1 5.8981 6.6879 -4.8052 41 1 3.7381 5.5058 -4.8009 42 1 3.9729 3.6208 -0.0244 43 1 5.2412 1.5663 1.9768 44 1 5.6534 3.3599 1.8577 45 1 3.2420 3.9495 2.3822 46 1 2.8295 2.1558 2.5018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599325760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:09 Heat of formation + Delta-G solvation = -23.612230 kcal Electronic energy + Delta-G solvation = -28580.290579 eV Core-core repulsion = 24856.921044 eV Total energy + Delta-G solvation = -3723.369534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49103 -40.70691 -38.71061 -37.68977 -36.39508 -34.54455 -33.32920 -32.79133 -32.16267 -29.52760 -29.07287 -26.83426 -24.87338 -24.25566 -23.83465 -23.05374 -22.87793 -21.95737 -20.23069 -18.53973 -18.44101 -17.82710 -17.58438 -17.02031 -16.79442 -16.59567 -16.39527 -16.18639 -15.93938 -15.51591 -15.03842 -14.63889 -14.34076 -14.13334 -14.04498 -13.90701 -13.80732 -13.41546 -13.27544 -13.12405 -12.86417 -12.80568 -12.67715 -12.52518 -12.31395 -12.16208 -11.98095 -11.81842 -11.55374 -11.36770 -11.05575 -10.81835 -10.70838 -10.39905 -10.30815 -10.13850 -9.78438 -9.40978 -8.05975 -6.06815 0.23436 0.48593 1.37719 1.45619 1.49324 1.71316 2.20999 2.46099 2.65664 3.05849 3.23234 3.36214 3.47368 3.70983 3.85976 3.93713 4.01336 4.05429 4.18179 4.25494 4.30665 4.32548 4.36040 4.41692 4.47112 4.52121 4.62038 4.73905 4.82594 4.85819 4.91135 4.93661 4.97334 5.04610 5.26351 5.27381 5.29115 5.31558 5.35294 5.40610 5.50613 5.76948 5.88366 5.90534 6.17254 6.22031 6.60994 6.93852 7.21503 7.37399 7.56043 9.00406 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009749 B = 0.007025 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.324393 B = 3984.554004 C = 5810.743183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.047 3.953 3 O -0.375 6.375 4 C 0.125 3.875 5 H 0.086 0.914 6 C 0.492 3.508 7 O -0.568 6.568 8 N -0.589 5.589 9 C 0.250 3.750 10 C -0.494 4.494 11 H 0.036 0.964 12 C 0.052 3.948 13 N -0.908 5.908 14 Si 0.911 3.089 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.280 1.280 18 C 0.168 3.832 19 C 0.103 3.897 20 C -0.143 4.143 21 C -0.088 4.088 22 C -0.170 4.170 23 C 0.071 3.929 24 N -0.499 5.499 25 C -0.130 4.130 26 C -0.109 4.109 27 C -0.170 4.170 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.027 0.973 35 H 0.263 0.737 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.156 0.844 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 0.252 -3.049 4.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 O -0.293 6.293 4 C 0.064 3.936 5 H 0.104 0.896 6 C 0.279 3.721 7 O -0.448 6.448 8 N -0.321 5.321 9 C 0.129 3.871 10 C -0.533 4.533 11 H 0.055 0.945 12 C -0.148 4.148 13 N -0.548 5.548 14 Si 0.739 3.261 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.206 1.206 18 C 0.044 3.956 19 C -0.035 4.035 20 C -0.163 4.163 21 C -0.114 4.114 22 C -0.190 4.190 23 C -0.086 4.086 24 N -0.209 5.209 25 C -0.149 4.149 26 C -0.146 4.146 27 C -0.207 4.207 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.156 0.844 39 H 0.174 0.826 40 H 0.181 0.819 41 H 0.184 0.816 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.124 -0.076 -3.339 6.116 hybrid contribution 1.576 1.314 0.182 2.060 sum -3.547 1.238 -3.156 4.907 Atomic orbital electron populations 1.21691 0.91956 1.03465 1.02588 1.22749 0.97210 0.83005 0.99962 1.87955 1.19646 1.28022 1.93664 1.21293 0.82460 0.98854 0.91020 0.89647 1.21479 0.82577 0.75949 0.92059 1.90613 1.50122 1.51338 1.52730 1.48206 1.06312 1.70582 1.06978 1.19323 0.85293 0.96921 0.85515 1.21109 1.19983 0.91852 1.20378 0.94528 1.25007 0.95892 0.97672 0.96249 1.69947 1.26893 1.30050 1.27878 0.86332 0.77513 0.83525 0.78705 1.20174 1.21191 1.20572 1.20220 1.01888 0.90989 0.82518 1.21602 0.89143 0.97484 0.95305 1.22069 0.98568 0.96758 0.98906 1.21904 1.00289 0.93876 0.95310 1.22413 0.93059 1.02346 1.01133 1.23119 0.98797 0.90267 0.96393 1.67518 1.32961 1.09907 1.10487 1.21520 1.06198 0.96126 0.91018 1.22756 0.90684 1.02529 0.98632 1.23142 0.98630 1.02906 0.96020 0.88650 0.91348 0.93284 0.94767 0.91727 0.94828 0.95469 0.92711 0.90589 0.87444 0.84419 0.82644 0.81877 0.81609 0.90913 0.89455 0.89766 0.88636 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 10.28 71.98 0.74 -2.67 16 2 C 0.05 1.42 6.44 71.98 0.46 1.89 16 3 O -0.37 -14.36 9.31 -129.99 -1.21 -15.57 16 4 C 0.12 4.96 1.97 29.85 0.06 5.02 16 5 H 0.09 3.21 6.55 -2.39 -0.02 3.20 16 6 C 0.49 21.80 6.97 87.66 0.61 22.41 16 7 O -0.57 -28.16 16.09 15.95 0.26 -27.90 16 8 N -0.59 -24.74 2.44 -830.50 -2.03 -26.77 16 9 C 0.25 10.91 4.73 85.64 0.40 11.31 16 10 C -0.49 -22.91 5.60 25.60 0.14 -22.77 16 11 H 0.04 1.87 7.40 -2.91 -0.02 1.85 16 12 C 0.05 2.45 3.50 84.65 0.30 2.75 16 13 N -0.91 -44.46 13.29 21.45 0.28 -44.17 16 14 Si 0.91 39.22 28.20 68.60 1.93 41.16 16 15 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 18 C 0.17 6.42 5.76 85.63 0.49 6.91 16 19 C 0.10 3.98 6.36 42.55 0.27 4.25 16 20 C -0.14 -4.89 9.58 22.36 0.21 -4.68 16 21 C -0.09 -2.56 10.18 22.47 0.23 -2.33 16 22 C -0.17 -4.65 10.11 22.36 0.23 -4.42 16 23 C 0.07 2.33 11.18 84.67 0.95 3.27 16 24 N -0.50 -20.05 10.27 -183.88 -1.89 -21.94 16 25 C -0.13 -5.24 3.47 -10.79 -0.04 -5.28 16 26 C -0.11 -4.28 6.72 30.62 0.21 -4.07 16 27 C -0.17 -5.80 10.03 30.62 0.31 -5.49 16 28 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.03 1.11 8.11 -2.39 -0.02 1.09 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.03 1.52 4.99 -2.39 -0.01 1.51 16 34 H 0.03 1.23 7.89 -2.39 -0.02 1.21 16 35 H 0.26 12.59 8.31 -92.70 -0.77 11.82 16 36 H 0.08 3.02 7.42 -2.39 -0.02 3.01 16 37 H 0.11 3.52 7.79 -2.39 -0.02 3.50 16 38 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 39 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 41 H 0.17 4.46 8.06 -2.91 -0.02 4.44 16 42 H 0.07 3.38 7.49 -2.39 -0.02 3.36 16 43 H 0.09 3.48 7.53 -2.39 -0.02 3.47 16 44 H 0.08 3.63 4.88 -2.38 -0.01 3.62 16 45 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -61.57 373.23 3.89 -57.68 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.97 Total: 31.41 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 5.57 Total: 6.10 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -3.63 Total: -92.88 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.95 Total: -43.47 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.93 Total: 41.16 kcal Total: -61.57 3.89 -57.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599325760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.070 kcal (2) G-P(sol) polarization free energy of solvation -61.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds