Wall clock time and date at job start Tue Mar 31 2020 12:22:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.45201 * 109.47187 * 2 1
4 4 C 1.34673 * 116.99885 * 179.97438 * 3 2 1
5 5 O 1.21429 * 120.00041 * 0.02562 * 4 3 2
6 6 C 1.48069 * 120.00012 * 180.02562 * 4 3 2
7 7 C 1.39350 * 119.72987 * 180.02562 * 6 4 3
8 8 C 1.38591 * 119.05805 * 180.23273 * 7 6 4
9 9 C 1.38626 * 118.48806 * 359.48167 * 8 7 6
10 10 C 1.38580 * 119.35682 * 0.54152 * 9 8 7
11 11 C 1.50707 * 119.54785 * 179.72780 * 10 9 8
12 12 N 1.46893 * 109.47274 * 94.97299 * 11 10 9
13 13 C 1.46850 * 111.00007 * 45.79752 * 12 11 10
14 14 C 1.53041 * 109.52468 * 185.83766 * 13 12 11
15 15 C 1.53123 * 109.27541 * 300.82126 * 14 13 12
16 16 C 1.53114 * 109.16300 * 57.65008 * 15 14 13
17 17 H 1.09001 * 109.50015 * 62.29242 * 16 15 14
18 18 C 1.50707 * 109.49983 * 182.40455 * 16 15 14
19 19 H 1.07995 * 119.99511 * 119.80838 * 18 16 15
20 20 C 1.37871 * 119.99929 * 299.80221 * 18 16 15
21 21 N 1.31515 * 120.00436 * 0.02562 * 20 18 16
22 22 Si 1.86803 * 120.00024 * 179.97438 * 20 18 16
23 23 H 1.48500 * 109.46985 * 90.00146 * 22 20 18
24 24 H 1.48497 * 109.47459 * 210.00350 * 22 20 18
25 25 H 1.48503 * 109.46891 * 330.00499 * 22 20 18
26 26 C 1.46850 * 110.99987 * 169.99984 * 12 11 10
27 27 N 1.31504 * 120.91027 * 359.70020 * 10 9 8
28 28 H 1.08998 * 109.47129 * 60.00055 * 1 2 3
29 29 H 1.09003 * 109.46993 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.47355 * 300.00180 * 1 2 3
31 31 H 1.08997 * 109.47355 * 239.99820 * 2 1 3
32 32 H 1.08998 * 109.46688 * 120.00248 * 2 1 3
33 33 H 1.08002 * 120.46717 * 359.95051 * 7 6 4
34 34 H 1.07997 * 120.75809 * 179.74933 * 8 7 6
35 35 H 1.07997 * 120.32408 * 180.26600 * 9 8 7
36 36 H 1.09001 * 109.47365 * 214.98216 * 11 10 9
37 37 H 1.09004 * 109.46701 * 334.97226 * 11 10 9
38 38 H 1.09007 * 109.45591 * 305.85104 * 13 12 11
39 39 H 1.08995 * 109.46363 * 65.81972 * 13 12 11
40 40 H 1.08995 * 109.50100 * 180.87532 * 14 13 12
41 41 H 1.09003 * 109.53436 * 60.77500 * 14 13 12
42 42 H 1.09001 * 109.51817 * 297.74258 * 15 14 13
43 43 H 1.08996 * 109.57168 * 177.59170 * 15 14 13
44 44 H 0.96996 * 120.00036 * 179.97438 * 21 20 18
45 45 H 1.08997 * 109.46487 * 294.18042 * 26 12 11
46 46 H 1.09009 * 109.45718 * 54.14718 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0141 1.3690 0.0000
4 6 3.3492 1.5454 0.0005
5 8 4.0889 0.5824 0.0005
6 6 3.9152 2.9136 0.0011
7 6 5.2975 3.0896 0.0012
8 6 5.8122 4.3764 0.0067
9 6 4.9266 5.4429 0.0009
10 6 3.5633 5.1938 0.0014
11 6 2.5966 6.3500 0.0014
12 7 2.1900 6.6484 -1.3783
13 6 1.8500 5.4181 -2.1044
14 6 1.5731 5.7506 -3.5724
15 6 0.4163 6.7504 -3.6547
16 6 0.7760 8.0026 -2.8504
17 1 1.6552 8.4757 -3.2876
18 6 -0.3814 8.9675 -2.8773
19 1 -0.8558 9.2674 -1.9547
20 6 -0.8342 9.4674 -4.0798
21 7 -0.2567 9.1018 -5.2033
22 14 -2.2692 10.6628 -4.1133
23 1 -1.7576 12.0532 -4.0118
24 1 -3.0176 10.5024 -5.3858
25 1 -3.1732 10.3833 -2.9687
26 6 1.0760 7.6048 -1.4034
27 7 3.1015 3.9626 0.0012
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8899
31 1 1.8934 -0.5138 -0.8899
32 1 1.8933 -0.5139 0.8900
33 1 5.9583 2.2354 0.0015
34 1 6.8790 4.5445 0.0109
35 1 5.2954 6.4579 0.0006
36 1 1.7178 6.0888 0.5909
37 1 3.0781 7.2261 0.4358
38 1 2.6827 4.7174 -2.0415
39 1 0.9623 4.9678 -1.6603
40 1 1.3056 4.8395 -4.1076
41 1 2.4648 6.1880 -4.0215
42 1 -0.4856 6.2986 -3.2416
43 1 0.2429 7.0233 -4.6956
44 1 -0.5756 9.4532 -6.0493
45 1 0.1919 7.1442 -0.9626
46 1 1.3464 8.4924 -0.8314
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000600177797.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:22:42
Heat of formation + Delta-G solvation = -48.974049 kcal
Electronic energy + Delta-G solvation = -26818.048402 eV
Core-core repulsion = 23093.579097 eV
Total energy + Delta-G solvation = -3724.469305 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-41.06912 -39.96568 -37.99595 -36.79740 -34.18513 -32.93672 -32.40188 -31.74398
-30.90861 -29.72963 -26.61897 -25.55385 -24.89777 -23.27477 -22.78682 -21.74071
-21.58467 -20.58546 -18.61511 -18.33367 -17.14398 -16.78560 -16.45168 -16.30177
-16.03184 -15.41083 -14.86936 -14.44931 -14.39099 -13.97041 -13.74374 -13.40514
-13.38911 -13.12417 -12.99518 -12.91668 -12.43826 -12.22818 -12.11753 -11.88832
-11.79332 -11.73023 -11.37810 -10.96882 -10.93499 -10.72255 -10.65711 -10.64395
-10.22148 -9.96346 -9.78217 -9.73079 -9.43920 -9.29581 -8.98656 -8.67560
-8.27602 -7.66802 -5.95207 -4.01389 0.34377 0.99382 2.23080 2.34964
3.32385 3.39194 3.42078 3.56244 3.84707 4.41140 4.47554 4.54541
4.69242 4.71575 4.75639 4.76723 4.80789 5.02782 5.16470 5.33534
5.34991 5.43838 5.53687 5.58164 5.74633 5.76896 5.84139 5.86614
5.89778 6.01585 6.16724 6.17775 6.31160 6.38762 6.43879 6.56734
6.77920 6.80057 6.98128 7.24951 7.36780 7.41673 7.65393 7.74940
7.76857 7.81418 8.10516 8.20087 8.50189 9.02668 9.62831 11.10781
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.015756 B = 0.003159 C = 0.002810
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1776.657433 B = 8860.348941 C = 9961.138231
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.060 3.940
3 O -0.330 6.330
4 C 0.528 3.472
5 O -0.505 6.505
6 C 0.086 3.914
7 C -0.112 4.112
8 C -0.084 4.084
9 C -0.118 4.118
10 C 0.140 3.860
11 C 0.099 3.901
12 N -0.531 5.531
13 C 0.067 3.933
14 C -0.117 4.117
15 C -0.110 4.110
16 C 0.056 3.944
17 H 0.034 0.966
18 C -0.514 4.514
19 H 0.054 0.946
20 C 0.063 3.937
21 N -0.888 5.888
22 Si 0.890 3.110
23 H -0.281 1.281
24 H -0.287 1.287
25 H -0.275 1.275
26 C 0.068 3.932
27 N -0.427 5.427
28 H 0.070 0.930
29 H 0.079 0.921
30 H 0.068 0.932
31 H 0.071 0.929
32 H 0.069 0.931
33 H 0.147 0.853
34 H 0.146 0.854
35 H 0.147 0.853
36 H 0.052 0.948
37 H 0.091 0.909
38 H 0.054 0.946
39 H 0.030 0.970
40 H 0.044 0.956
41 H 0.057 0.943
42 H 0.030 0.970
43 H 0.090 0.910
44 H 0.259 0.741
45 H 0.022 0.978
46 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.439 -14.121 11.454 20.487
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.014 4.014
3 O -0.245 6.245
4 C 0.372 3.628
5 O -0.393 6.393
6 C -0.051 4.051
7 C -0.133 4.133
8 C -0.110 4.110
9 C -0.139 4.139
10 C 0.000 4.000
11 C -0.029 4.029
12 N -0.256 5.256
13 C -0.061 4.061
14 C -0.155 4.155
15 C -0.148 4.148
16 C 0.037 3.963
17 H 0.052 0.948
18 C -0.553 4.553
19 H 0.072 0.928
20 C -0.138 4.138
21 N -0.527 5.527
22 Si 0.718 3.282
23 H -0.207 1.207
24 H -0.213 1.213
25 H -0.200 1.200
26 C -0.059 4.059
27 N -0.139 5.139
28 H 0.089 0.911
29 H 0.098 0.902
30 H 0.087 0.913
31 H 0.089 0.911
32 H 0.088 0.912
33 H 0.165 0.835
34 H 0.164 0.836
35 H 0.165 0.835
36 H 0.070 0.930
37 H 0.109 0.891
38 H 0.073 0.927
39 H 0.049 0.951
40 H 0.063 0.937
41 H 0.076 0.924
42 H 0.049 0.951
43 H 0.108 0.892
44 H 0.069 0.931
45 H 0.041 0.959
46 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 9.080 -14.376 11.026 20.265
hybrid contribution -0.531 0.172 0.289 0.629
sum 8.549 -14.204 11.315 20.071
Atomic orbital electron populations
1.21805 0.92269 1.02876 1.04061 1.23113 0.95783 0.79959 1.02504
1.86717 1.22834 1.32023 1.82941 1.20809 0.81108 0.88483 0.72432
1.90829 1.60795 1.41467 1.46252 1.19953 0.90339 0.90511 1.04275
1.22027 0.94461 0.99036 0.97741 1.21607 1.00963 0.91551 0.96882
1.22352 0.93661 1.01080 0.96785 1.21349 0.92996 0.91650 0.94050
1.21104 0.96073 0.92979 0.92753 1.62287 1.40117 1.12923 1.10312
1.22049 0.98462 0.90434 0.95149 1.21689 1.00773 0.99069 0.93993
1.21647 0.93958 0.94789 1.04407 1.18656 0.96630 0.92877 0.88113
0.94754 1.21142 1.15816 1.25697 0.92642 0.92803 1.24930 0.96760
0.96432 0.95707 1.69896 1.41295 1.43965 0.97542 0.86633 0.82705
0.81509 0.77350 1.20737 1.21313 1.20006 1.22351 0.88823 0.93090
1.01595 1.67567 1.39374 0.98686 1.08305 0.91083 0.90213 0.91324
0.91085 0.91216 0.83477 0.83607 0.83479 0.93035 0.89115 0.92724
0.95144 0.93724 0.92382 0.95121 0.89184 0.93087 0.95926 0.92079
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.26 10.29 37.16 0.38 -0.87 16
2 C 0.06 0.61 6.19 37.16 0.23 0.84 16
3 O -0.33 -4.51 10.04 -40.42 -0.41 -4.92 16
4 C 0.53 7.40 7.95 34.76 0.28 7.68 16
5 O -0.51 -7.40 16.11 -19.21 -0.31 -7.71 16
6 C 0.09 1.17 6.75 -83.02 -0.56 0.61 16
7 C -0.11 -1.22 9.63 -39.04 -0.38 -1.59 16
8 C -0.08 -0.78 10.17 -39.31 -0.40 -1.17 16
9 C -0.12 -1.27 9.73 -39.31 -0.38 -1.65 16
10 C 0.14 1.91 4.92 -82.60 -0.41 1.51 16
11 C 0.10 1.46 5.59 -4.98 -0.03 1.43 16
12 N -0.53 -9.73 4.80 -236.11 -1.13 -10.87 16
13 C 0.07 1.26 4.71 -3.83 -0.02 1.25 16
14 C -0.12 -2.41 6.09 -26.65 -0.16 -2.57 16
15 C -0.11 -2.64 5.03 -26.61 -0.13 -2.78 16
16 C 0.06 1.39 2.26 -91.69 -0.21 1.19 16
17 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16
18 C -0.51 -13.99 8.56 -34.44 -0.29 -14.29 16
19 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16
20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16
21 N -0.89 -25.31 11.36 55.43 0.63 -24.68 16
22 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16
23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16
26 C 0.07 1.42 4.65 -3.84 -0.02 1.40 16
27 N -0.43 -6.36 8.41 -6.07 -0.05 -6.41 16
28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16
29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
33 H 0.15 1.36 7.64 -52.49 -0.40 0.96 16
34 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16
35 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16
36 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16
37 H 0.09 1.13 8.04 -51.93 -0.42 0.71 16
38 H 0.05 0.99 5.76 -51.92 -0.30 0.70 16
39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
40 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16
41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16
43 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16
44 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
46 H 0.06 1.22 8.12 -51.92 -0.42 0.80 16
LS Contribution 374.92 15.07 5.65 5.65
Total: -1.00 -30.89 374.92 -10.15 -41.04
By element:
Atomic # 1 Polarization: 6.45 SS G_CDS: -7.32 Total: -0.87 kcal
Atomic # 6 Polarization: -5.19 SS G_CDS: -2.19 Total: -7.38 kcal
Atomic # 7 Polarization: -41.40 SS G_CDS: -0.55 Total: -41.96 kcal
Atomic # 8 Polarization: -11.91 SS G_CDS: -0.72 Total: -12.63 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -30.89 -10.15 -41.04 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600177797.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.938 kcal
(2) G-P(sol) polarization free energy of solvation -30.888 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.826 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.974 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds