Wall clock time and date at job start Tue Mar 31 2020 12:22:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.45201 * 109.47187 * 2 1
4 4 C 1.34673 * 116.99885 * 179.97438 * 3 2 1
5 5 O 1.21429 * 120.00041 * 0.02562 * 4 3 2
6 6 C 1.48069 * 120.00012 * 180.02562 * 4 3 2
7 7 C 1.39350 * 119.72987 * 180.02562 * 6 4 3
8 8 C 1.38591 * 119.05805 * 180.23273 * 7 6 4
9 9 C 1.38626 * 118.48806 * 359.48167 * 8 7 6
10 10 C 1.38580 * 119.35682 * 0.54152 * 9 8 7
11 11 C 1.50707 * 119.54785 * 179.72780 * 10 9 8
12 12 N 1.46893 * 109.47274 * 94.97299 * 11 10 9
13 13 C 1.46850 * 111.00007 * 45.79752 * 12 11 10
14 14 C 1.53041 * 109.52468 * 185.83766 * 13 12 11
15 15 C 1.53123 * 109.27541 * 300.82126 * 14 13 12
16 16 C 1.53114 * 109.16300 * 57.65008 * 15 14 13
17 17 H 1.09001 * 109.50015 * 62.29242 * 16 15 14
18 18 C 1.50707 * 109.49983 * 182.40455 * 16 15 14
19 19 H 1.07995 * 119.99511 * 119.80838 * 18 16 15
20 20 C 1.37871 * 119.99929 * 299.80221 * 18 16 15
21 21 N 1.31515 * 120.00436 * 0.02562 * 20 18 16
22 22 Si 1.86803 * 120.00024 * 179.97438 * 20 18 16
23 23 H 1.48500 * 109.46985 * 90.00146 * 22 20 18
24 24 H 1.48497 * 109.47459 * 210.00350 * 22 20 18
25 25 H 1.48503 * 109.46891 * 330.00499 * 22 20 18
26 26 C 1.46850 * 110.99987 * 169.99984 * 12 11 10
27 27 N 1.31504 * 120.91027 * 359.70020 * 10 9 8
28 28 H 1.08998 * 109.47129 * 60.00055 * 1 2 3
29 29 H 1.09003 * 109.46993 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.47355 * 300.00180 * 1 2 3
31 31 H 1.08997 * 109.47355 * 239.99820 * 2 1 3
32 32 H 1.08998 * 109.46688 * 120.00248 * 2 1 3
33 33 H 1.08002 * 120.46717 * 359.95051 * 7 6 4
34 34 H 1.07997 * 120.75809 * 179.74933 * 8 7 6
35 35 H 1.07997 * 120.32408 * 180.26600 * 9 8 7
36 36 H 1.09001 * 109.47365 * 214.98216 * 11 10 9
37 37 H 1.09004 * 109.46701 * 334.97226 * 11 10 9
38 38 H 1.09007 * 109.45591 * 305.85104 * 13 12 11
39 39 H 1.08995 * 109.46363 * 65.81972 * 13 12 11
40 40 H 1.08995 * 109.50100 * 180.87532 * 14 13 12
41 41 H 1.09003 * 109.53436 * 60.77500 * 14 13 12
42 42 H 1.09001 * 109.51817 * 297.74258 * 15 14 13
43 43 H 1.08996 * 109.57168 * 177.59170 * 15 14 13
44 44 H 0.96996 * 120.00036 * 179.97438 * 21 20 18
45 45 H 1.08997 * 109.46487 * 294.18042 * 26 12 11
46 46 H 1.09009 * 109.45718 * 54.14718 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0141 1.3690 0.0000
4 6 3.3492 1.5454 0.0005
5 8 4.0889 0.5824 0.0005
6 6 3.9152 2.9136 0.0011
7 6 5.2975 3.0896 0.0012
8 6 5.8122 4.3764 0.0067
9 6 4.9266 5.4429 0.0009
10 6 3.5633 5.1938 0.0014
11 6 2.5966 6.3500 0.0014
12 7 2.1900 6.6484 -1.3783
13 6 1.8500 5.4181 -2.1044
14 6 1.5731 5.7506 -3.5724
15 6 0.4163 6.7504 -3.6547
16 6 0.7760 8.0026 -2.8504
17 1 1.6552 8.4757 -3.2876
18 6 -0.3814 8.9675 -2.8773
19 1 -0.8558 9.2674 -1.9547
20 6 -0.8342 9.4674 -4.0798
21 7 -0.2567 9.1018 -5.2033
22 14 -2.2692 10.6628 -4.1133
23 1 -1.7576 12.0532 -4.0118
24 1 -3.0176 10.5024 -5.3858
25 1 -3.1732 10.3833 -2.9687
26 6 1.0760 7.6048 -1.4034
27 7 3.1015 3.9626 0.0012
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8899
31 1 1.8934 -0.5138 -0.8899
32 1 1.8933 -0.5139 0.8900
33 1 5.9583 2.2354 0.0015
34 1 6.8790 4.5445 0.0109
35 1 5.2954 6.4579 0.0006
36 1 1.7178 6.0888 0.5909
37 1 3.0781 7.2261 0.4358
38 1 2.6827 4.7174 -2.0415
39 1 0.9623 4.9678 -1.6603
40 1 1.3056 4.8395 -4.1076
41 1 2.4648 6.1880 -4.0215
42 1 -0.4856 6.2986 -3.2416
43 1 0.2429 7.0233 -4.6956
44 1 -0.5756 9.4532 -6.0493
45 1 0.1919 7.1442 -0.9626
46 1 1.3464 8.4924 -0.8314
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000600177797.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:22:41
Heat of formation + Delta-G solvation = -66.842263 kcal
Electronic energy + Delta-G solvation = -26818.823226 eV
Core-core repulsion = 23093.579097 eV
Total energy + Delta-G solvation = -3725.244129 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.03552 -40.98563 -39.53402 -37.80408 -35.83444 -34.04114 -33.79311 -32.66525
-32.16375 -31.54367 -27.87027 -26.91793 -26.43379 -24.23940 -23.96703 -23.36404
-22.68861 -21.85879 -20.35506 -19.35695 -18.46334 -18.05390 -17.73836 -17.27752
-16.95872 -16.86103 -16.49237 -15.91782 -15.39635 -15.22726 -14.96577 -14.85961
-14.58628 -14.46015 -14.28892 -13.99850 -13.68550 -13.59539 -13.41095 -12.99764
-12.95225 -12.89419 -12.79481 -12.58303 -12.51729 -12.48455 -11.97363 -11.86393
-11.71541 -11.59048 -11.39400 -10.99252 -10.89655 -10.65358 -10.58581 -10.35301
-10.22339 -9.17131 -8.05477 -6.19267 -0.56475 0.13564 1.25868 1.43606
1.44381 1.46684 1.54317 2.44406 2.60057 2.89798 3.21895 3.26153
3.52162 3.79122 3.90109 3.96175 4.00355 4.03252 4.16337 4.24322
4.27074 4.32641 4.40072 4.50176 4.56252 4.66014 4.74145 4.74832
4.77279 4.86979 4.91025 4.97815 5.01212 5.04862 5.08857 5.12367
5.17924 5.31595 5.36082 5.51554 5.52193 5.65729 5.95287 6.10607
6.19445 6.25064 6.39616 6.46454 6.81611 6.93191 7.48583 8.99384
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.015756 B = 0.003159 C = 0.002810
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1776.657433 B = 8860.348941 C = 9961.138231
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.052 3.948
3 O -0.348 6.348
4 C 0.526 3.474
5 O -0.520 6.520
6 C 0.060 3.940
7 C -0.104 4.104
8 C -0.069 4.069
9 C -0.110 4.110
10 C 0.117 3.883
11 C 0.101 3.899
12 N -0.534 5.534
13 C 0.081 3.919
14 C -0.110 4.110
15 C -0.102 4.102
16 C 0.054 3.946
17 H 0.003 0.997
18 C -0.534 4.534
19 H 0.054 0.946
20 C 0.014 3.986
21 N -0.916 5.916
22 Si 0.954 3.046
23 H -0.274 1.274
24 H -0.286 1.286
25 H -0.269 1.269
26 C 0.082 3.918
27 N -0.456 5.456
28 H 0.059 0.941
29 H 0.107 0.893
30 H 0.065 0.935
31 H 0.074 0.926
32 H 0.078 0.922
33 H 0.163 0.837
34 H 0.189 0.811
35 H 0.173 0.827
36 H 0.042 0.958
37 H 0.118 0.882
38 H 0.067 0.933
39 H 0.017 0.983
40 H 0.058 0.942
41 H 0.052 0.948
42 H 0.019 0.981
43 H 0.059 0.941
44 H 0.260 0.740
45 H 0.014 0.986
46 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.874 -14.198 12.666 21.914
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.021 4.021
3 O -0.264 6.264
4 C 0.370 3.630
5 O -0.409 6.409
6 C -0.076 4.076
7 C -0.125 4.125
8 C -0.095 4.095
9 C -0.131 4.131
10 C -0.024 4.024
11 C -0.026 4.026
12 N -0.258 5.258
13 C -0.047 4.047
14 C -0.148 4.148
15 C -0.140 4.140
16 C 0.036 3.964
17 H 0.021 0.979
18 C -0.573 4.573
19 H 0.072 0.928
20 C -0.185 4.185
21 N -0.556 5.556
22 Si 0.780 3.220
23 H -0.200 1.200
24 H -0.211 1.211
25 H -0.194 1.194
26 C -0.046 4.046
27 N -0.169 5.169
28 H 0.079 0.921
29 H 0.125 0.875
30 H 0.084 0.916
31 H 0.092 0.908
32 H 0.097 0.903
33 H 0.181 0.819
34 H 0.207 0.793
35 H 0.191 0.809
36 H 0.060 0.940
37 H 0.135 0.865
38 H 0.085 0.915
39 H 0.035 0.965
40 H 0.077 0.923
41 H 0.071 0.929
42 H 0.037 0.963
43 H 0.077 0.923
44 H 0.069 0.931
45 H 0.032 0.968
46 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 10.513 -14.461 12.256 21.676
hybrid contribution -0.926 0.153 -0.071 0.941
sum 9.587 -14.308 12.185 21.098
Atomic orbital electron populations
1.21830 0.90896 1.04444 1.03330 1.23393 0.96893 0.78729 1.03086
1.86715 1.22911 1.33976 1.82770 1.21038 0.81129 0.88827 0.71999
1.90800 1.60981 1.41914 1.47247 1.20107 0.91502 0.89899 1.06101
1.22329 0.93428 1.00587 0.96137 1.22078 1.02813 0.90057 0.94525
1.22654 0.92423 1.02928 0.95049 1.21268 0.94102 0.90816 0.96172
1.21166 0.96429 0.94891 0.90146 1.62193 1.38410 1.12256 1.12989
1.21864 0.98333 0.90822 0.93685 1.21596 0.98931 0.98552 0.95737
1.21458 0.94928 0.95493 1.02163 1.18572 0.94645 0.92603 0.90613
0.97912 1.21519 1.16618 1.26360 0.92781 0.92801 1.25713 0.99271
0.98107 0.95390 1.70037 1.42604 1.44938 0.97970 0.85623 0.79593
0.79442 0.77380 1.19989 1.21130 1.19356 1.22034 0.89584 0.94187
0.98760 1.67407 1.40680 0.99447 1.09356 0.92149 0.87477 0.91634
0.90789 0.90329 0.81919 0.79334 0.80920 0.93965 0.86451 0.91480
0.96464 0.92319 0.92889 0.96261 0.92281 0.93127 0.96816 0.91048
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.36 10.29 71.98 0.74 -1.61 16
2 C 0.05 1.04 6.19 71.98 0.45 1.49 16
3 O -0.35 -9.63 10.04 -55.82 -0.56 -10.19 16
4 C 0.53 14.64 7.95 70.43 0.56 15.20 16
5 O -0.52 -14.99 16.11 20.07 0.32 -14.67 16
6 C 0.06 1.57 6.75 41.88 0.28 1.86 16
7 C -0.10 -1.99 9.63 22.62 0.22 -1.77 16
8 C -0.07 -0.99 10.17 22.45 0.23 -0.76 16
9 C -0.11 -1.98 9.73 22.44 0.22 -1.77 16
10 C 0.12 2.99 4.92 42.69 0.21 3.20 16
11 C 0.10 2.84 5.59 85.56 0.48 3.32 16
12 N -0.53 -19.19 4.80 -900.91 -4.32 -23.52 16
13 C 0.08 3.04 4.71 86.33 0.41 3.45 16
14 C -0.11 -4.57 6.09 30.65 0.19 -4.39 16
15 C -0.10 -5.08 5.03 30.67 0.15 -4.92 16
16 C 0.05 2.78 2.26 -11.49 -0.03 2.75 16
17 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16
18 C -0.53 -29.58 8.56 25.60 0.22 -29.36 16
19 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16
20 C 0.01 0.77 5.30 84.65 0.45 1.22 16
21 N -0.92 -53.45 11.36 21.45 0.24 -53.20 16
22 Si 0.95 43.74 29.54 68.60 2.03 45.76 16
23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
24 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16
25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
26 C 0.08 3.42 4.65 86.32 0.40 3.82 16
27 N -0.46 -13.24 8.41 -173.11 -1.46 -14.69 16
28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
29 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16
30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16
32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
33 H 0.16 2.55 7.64 -2.91 -0.02 2.53 16
34 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16
35 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16
36 H 0.04 1.26 8.08 -2.39 -0.02 1.24 16
37 H 0.12 2.62 8.04 -2.39 -0.02 2.60 16
38 H 0.07 2.39 5.76 -2.38 -0.01 2.38 16
39 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16
40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16
41 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16
42 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16
43 H 0.06 3.29 6.16 -2.39 -0.01 3.28 16
44 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16
45 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16
46 H 0.07 2.81 8.12 -2.38 -0.02 2.80 16
Total: -1.00 -68.86 374.92 2.38 -66.48
By element:
Atomic # 1 Polarization: 11.35 SS G_CDS: 0.96 Total: 12.31 kcal
Atomic # 6 Polarization: -13.45 SS G_CDS: 5.17 Total: -8.28 kcal
Atomic # 7 Polarization: -85.87 SS G_CDS: -5.54 Total: -91.41 kcal
Atomic # 8 Polarization: -24.62 SS G_CDS: -0.24 Total: -24.86 kcal
Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal
Total: -68.86 2.38 -66.48 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600177797.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.366 kcal
(2) G-P(sol) polarization free energy of solvation -68.861 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.226 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.477 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.842 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds