Wall clock time and date at job start Tue Mar 31 2020 12:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38527 * 126.37274 * 2 1 4 4 C 1.38680 * 133.86970 * 359.97438 * 3 2 1 5 5 C 1.38145 * 119.83077 * 180.02562 * 4 3 2 6 6 F 1.35100 * 119.80874 * 179.97438 * 5 4 3 7 7 C 1.38885 * 120.37716 * 0.02562 * 5 4 3 8 8 C 1.37688 * 120.47613 * 359.97438 * 7 5 4 9 9 C 1.39691 * 119.80729 * 0.26041 * 8 7 5 10 10 N 1.35990 * 133.36054 * 179.74288 * 9 8 7 11 11 C 1.30937 * 109.60872 * 180.02562 * 10 9 8 12 12 N 1.37949 * 125.06183 * 180.02562 * 11 10 9 13 13 C 1.46955 * 110.99989 * 58.85971 * 12 11 10 14 14 C 1.53053 * 109.36134 * 176.80906 * 13 12 11 15 15 N 1.46952 * 109.36587 * 58.40270 * 14 13 12 16 16 C 1.46904 * 111.00140 * 176.80802 * 15 14 13 17 17 C 1.50699 * 109.46887 * 58.96499 * 16 15 14 18 18 H 1.07996 * 120.00150 * 5.08598 * 17 16 15 19 19 C 1.37880 * 119.99878 * 185.08881 * 17 16 15 20 20 N 1.31511 * 119.99735 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 119.99931 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47451 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47248 * 119.99795 * 21 19 17 24 24 H 1.48507 * 109.47180 * 239.99828 * 21 19 17 25 25 C 1.46955 * 110.88009 * 300.67624 * 15 14 13 26 26 C 1.46952 * 111.00183 * 295.05934 * 12 11 10 27 27 H 1.09001 * 109.47294 * 85.03091 * 1 2 3 28 28 H 1.08993 * 109.47402 * 205.03583 * 1 2 3 29 29 H 1.09004 * 109.47485 * 325.03760 * 1 2 3 30 30 H 1.07993 * 120.08417 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.76057 * 179.97438 * 7 5 4 32 32 H 1.08003 * 120.09518 * 179.97438 * 8 7 5 33 33 H 1.08992 * 109.48925 * 296.77416 * 13 12 11 34 34 H 1.09004 * 109.48800 * 56.84923 * 13 12 11 35 35 H 1.08997 * 109.49230 * 298.43213 * 14 13 12 36 36 H 1.09007 * 109.48559 * 178.36926 * 14 13 12 37 37 H 1.09001 * 109.47105 * 178.96076 * 16 15 14 38 38 H 1.09001 * 109.47096 * 298.96104 * 16 15 14 39 39 H 0.97007 * 119.99896 * 180.02562 * 20 19 17 40 40 H 1.08992 * 109.48925 * 299.35598 * 25 15 14 41 41 H 1.09004 * 109.48800 * 179.28091 * 25 15 14 42 42 H 1.09007 * 109.48939 * 303.15675 * 26 12 11 43 43 H 1.08996 * 109.49036 * 63.19929 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2865 1.1154 0.0000 4 6 2.0514 2.4821 -0.0004 5 6 3.1160 3.3625 -0.0008 6 9 2.8865 4.6938 -0.0018 7 6 4.4208 2.8867 -0.0013 8 6 4.6704 1.5326 -0.0009 9 6 3.6042 0.6300 -0.0055 10 7 3.5304 -0.7278 -0.0107 11 6 2.2749 -1.0997 -0.0140 12 7 1.8357 -2.4074 -0.0192 13 6 2.3387 -3.1364 1.1534 14 6 1.7660 -4.5558 1.1525 15 7 2.1512 -5.2359 -0.0919 16 6 1.6835 -6.6284 -0.0974 17 6 0.1838 -6.6552 0.0480 18 1 -0.3748 -5.7309 0.0531 19 6 -0.4752 -7.8597 0.1746 20 7 0.2051 -8.9851 0.1690 21 14 -2.3340 -7.8928 0.3555 22 1 -2.8585 -6.5036 0.3327 23 1 -2.9270 -8.6636 -0.7668 24 1 -2.6946 -8.5375 1.6438 25 6 1.6482 -4.5068 -1.2645 26 6 2.2209 -3.0874 -1.2636 27 1 -0.3634 0.0890 -1.0238 28 1 -0.3634 -0.9310 0.4349 29 1 -0.3634 0.8422 0.5889 30 1 1.0387 2.8573 -0.0013 31 1 5.2456 3.5838 -0.0020 32 1 5.6875 1.1693 -0.0017 33 1 3.4269 -3.1834 1.1132 34 1 2.0299 -2.6204 2.0625 35 1 0.6792 -4.5095 1.2202 36 1 2.1607 -5.1077 2.0057 37 1 1.9659 -7.1029 -1.0372 38 1 2.1388 -7.1679 0.7332 39 1 -0.2585 -9.8326 0.2577 40 1 0.5601 -4.4598 -1.2243 41 1 1.9571 -5.0229 -2.1736 42 1 1.8263 -2.5355 -2.1168 43 1 3.3078 -3.1334 -1.3315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601261846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:49 Heat of formation + Delta-G solvation = 55.487175 kcal Electronic energy + Delta-G solvation = -26412.232611 eV Core-core repulsion = 22601.125531 eV Total energy + Delta-G solvation = -3811.107081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.10435 -42.32653 -38.99564 -37.17089 -35.05981 -34.16595 -32.40644 -30.82064 -30.55097 -29.10365 -27.47623 -27.10883 -25.16783 -23.14534 -22.91271 -22.37777 -21.79137 -20.54028 -19.15594 -18.10433 -17.56815 -17.00808 -16.35250 -16.25959 -15.87695 -15.63813 -15.21731 -14.85251 -14.49359 -14.44663 -14.29692 -14.10192 -13.44111 -13.41531 -13.29827 -13.18489 -12.97300 -12.69426 -12.07836 -11.97515 -11.72819 -11.51159 -11.13943 -10.95079 -10.84407 -10.66952 -10.57216 -10.54594 -10.21403 -10.18817 -9.92222 -9.63056 -8.79412 -8.57904 -8.48674 -8.17619 -7.26528 -6.07937 -4.17197 0.55930 1.11754 2.18184 2.42778 3.22331 3.31006 3.33435 3.49459 3.70029 3.94156 4.16041 4.35848 4.54424 4.57741 4.80955 4.90386 4.94780 5.01617 5.17168 5.21058 5.22667 5.35895 5.44738 5.53175 5.60042 5.66626 5.81569 5.85944 5.90889 5.94765 6.00363 6.11432 6.24146 6.39711 6.49291 6.61633 6.63806 6.76120 6.86710 7.20901 7.35616 7.47456 7.71766 7.84563 7.95664 8.18269 8.22871 8.93161 9.49946 10.97270 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.029329 B = 0.002743 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.464662 B =10204.825936 C =10820.298543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.477 5.477 3 C 0.071 3.929 4 C -0.143 4.143 5 C 0.108 3.892 6 F -0.138 7.138 7 C -0.161 4.161 8 C -0.035 4.035 9 C 0.049 3.951 10 N -0.507 5.507 11 C 0.470 3.530 12 N -0.477 5.477 13 C 0.072 3.928 14 C 0.066 3.934 15 N -0.542 5.542 16 C 0.187 3.813 17 C -0.550 4.550 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.890 5.890 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.065 3.935 26 C 0.072 3.928 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.262 0.738 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.911 22.115 -0.359 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.168 5.168 3 C -0.040 4.040 4 C -0.165 4.165 5 C 0.087 3.913 6 F -0.117 7.117 7 C -0.182 4.182 8 C -0.055 4.055 9 C -0.071 4.071 10 N -0.230 5.230 11 C 0.115 3.885 12 N -0.202 5.202 13 C -0.055 4.055 14 C -0.063 4.063 15 N -0.267 5.267 16 C 0.062 3.938 17 C -0.589 4.589 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.065 4.065 26 C -0.054 4.054 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.151 0.849 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.428 21.379 -0.341 21.835 hybrid contribution -2.185 0.581 0.106 2.264 sum 2.242 21.960 -0.236 22.075 Atomic orbital electron populations 1.21994 0.75490 1.05104 1.03453 1.45282 1.07461 1.04177 1.59899 1.18294 0.91258 0.88322 1.06094 1.19611 0.99271 0.89203 1.08416 1.17077 0.93282 0.76954 1.03977 1.91496 1.95485 1.30628 1.94061 1.20825 0.95279 0.95852 1.06220 1.20119 0.98017 0.90252 0.97102 1.19012 0.91940 0.90520 1.05644 1.71115 1.17355 1.10501 1.24011 1.21148 0.83340 0.87775 0.96237 1.58966 1.58883 0.95980 1.06402 1.22352 0.99250 0.94419 0.89497 1.21956 0.99456 0.90602 0.94274 1.62709 1.58523 1.04881 1.00555 1.19753 0.93500 0.82516 0.98077 1.21775 0.93469 0.92628 1.51009 0.92289 1.24965 0.98216 0.95665 0.94946 1.69952 1.35510 0.97538 1.49831 0.86595 0.85933 0.78051 0.77750 1.19857 1.20978 1.20961 1.21968 0.98650 0.90508 0.95329 1.22333 1.00070 0.94983 0.88050 0.90750 0.88064 0.90236 0.84909 0.84114 0.84186 0.92238 0.91149 0.93020 0.90455 0.95299 0.94552 0.92822 0.93243 0.90524 0.91192 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 11.13 59.84 0.67 1.42 16 2 N -0.48 -6.05 3.23 -122.46 -0.40 -6.45 16 3 C 0.07 0.89 6.87 -83.85 -0.58 0.32 16 4 C -0.14 -1.51 10.01 -39.45 -0.40 -1.90 16 5 C 0.11 1.11 7.29 -39.38 -0.29 0.82 16 6 F -0.14 -1.43 17.26 2.25 0.04 -1.39 16 7 C -0.16 -1.50 9.99 -39.54 -0.40 -1.90 16 8 C -0.04 -0.38 10.10 -39.24 -0.40 -0.78 16 9 C 0.05 0.68 7.22 -84.66 -0.61 0.07 16 10 N -0.51 -7.94 11.14 -11.50 -0.13 -8.07 16 11 C 0.47 6.96 6.25 -319.95 -2.00 4.96 16 12 N -0.48 -7.29 4.50 -174.60 -0.79 -8.08 16 13 C 0.07 1.13 5.47 -3.77 -0.02 1.11 16 14 C 0.07 1.22 5.24 -3.77 -0.02 1.20 16 15 N -0.54 -11.08 4.92 -235.91 -1.16 -12.24 16 16 C 0.19 4.60 5.14 -4.97 -0.03 4.58 16 17 C -0.55 -14.42 7.66 -34.44 -0.26 -14.68 16 18 H 0.06 1.54 5.82 -52.49 -0.31 1.23 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 21 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.06 1.18 5.32 -3.77 -0.02 1.16 16 26 C 0.07 1.13 5.52 -3.77 -0.02 1.11 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.10 0.99 7.99 -51.93 -0.41 0.58 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.14 1.27 8.06 -52.48 -0.42 0.84 16 33 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 34 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 35 H 0.05 1.04 6.62 -51.93 -0.34 0.70 16 36 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 37 H 0.03 0.76 8.12 -51.93 -0.42 0.34 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.05 0.98 6.78 -51.93 -0.35 0.63 16 41 H 0.08 1.38 8.12 -51.93 -0.42 0.95 16 42 H 0.07 1.00 8.13 -51.92 -0.42 0.57 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 354.85 15.07 5.35 5.35 Total: -1.00 -29.73 354.85 -11.87 -41.60 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.04 Total: -0.87 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -4.46 Total: -0.85 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -1.73 Total: -59.59 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.73 -11.87 -41.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.085 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds