Wall clock time and date at job start Tue Mar 31 2020 12:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38527 * 126.37274 * 2 1 4 4 C 1.38680 * 133.86970 * 359.97438 * 3 2 1 5 5 C 1.38145 * 119.83077 * 180.02562 * 4 3 2 6 6 F 1.35100 * 119.80874 * 179.97438 * 5 4 3 7 7 C 1.38885 * 120.37716 * 0.02562 * 5 4 3 8 8 C 1.37688 * 120.47613 * 359.97438 * 7 5 4 9 9 C 1.39691 * 119.80729 * 0.26041 * 8 7 5 10 10 N 1.35990 * 133.36054 * 179.74288 * 9 8 7 11 11 C 1.30937 * 109.60872 * 180.02562 * 10 9 8 12 12 N 1.37949 * 125.06183 * 180.02562 * 11 10 9 13 13 C 1.46955 * 110.99989 * 58.85971 * 12 11 10 14 14 C 1.53053 * 109.36134 * 176.80906 * 13 12 11 15 15 N 1.46952 * 109.36587 * 58.40270 * 14 13 12 16 16 C 1.46904 * 111.00140 * 176.80802 * 15 14 13 17 17 C 1.50699 * 109.46887 * 58.96499 * 16 15 14 18 18 H 1.07996 * 120.00150 * 5.08598 * 17 16 15 19 19 C 1.37880 * 119.99878 * 185.08881 * 17 16 15 20 20 N 1.31511 * 119.99735 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 119.99931 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47451 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47248 * 119.99795 * 21 19 17 24 24 H 1.48507 * 109.47180 * 239.99828 * 21 19 17 25 25 C 1.46955 * 110.88009 * 300.67624 * 15 14 13 26 26 C 1.46952 * 111.00183 * 295.05934 * 12 11 10 27 27 H 1.09001 * 109.47294 * 85.03091 * 1 2 3 28 28 H 1.08993 * 109.47402 * 205.03583 * 1 2 3 29 29 H 1.09004 * 109.47485 * 325.03760 * 1 2 3 30 30 H 1.07993 * 120.08417 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.76057 * 179.97438 * 7 5 4 32 32 H 1.08003 * 120.09518 * 179.97438 * 8 7 5 33 33 H 1.08992 * 109.48925 * 296.77416 * 13 12 11 34 34 H 1.09004 * 109.48800 * 56.84923 * 13 12 11 35 35 H 1.08997 * 109.49230 * 298.43213 * 14 13 12 36 36 H 1.09007 * 109.48559 * 178.36926 * 14 13 12 37 37 H 1.09001 * 109.47105 * 178.96076 * 16 15 14 38 38 H 1.09001 * 109.47096 * 298.96104 * 16 15 14 39 39 H 0.97007 * 119.99896 * 180.02562 * 20 19 17 40 40 H 1.08992 * 109.48925 * 299.35598 * 25 15 14 41 41 H 1.09004 * 109.48800 * 179.28091 * 25 15 14 42 42 H 1.09007 * 109.48939 * 303.15675 * 26 12 11 43 43 H 1.08996 * 109.49036 * 63.19929 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2865 1.1154 0.0000 4 6 2.0514 2.4821 -0.0004 5 6 3.1160 3.3625 -0.0008 6 9 2.8865 4.6938 -0.0018 7 6 4.4208 2.8867 -0.0013 8 6 4.6704 1.5326 -0.0009 9 6 3.6042 0.6300 -0.0055 10 7 3.5304 -0.7278 -0.0107 11 6 2.2749 -1.0997 -0.0140 12 7 1.8357 -2.4074 -0.0192 13 6 2.3387 -3.1364 1.1534 14 6 1.7660 -4.5558 1.1525 15 7 2.1512 -5.2359 -0.0919 16 6 1.6835 -6.6284 -0.0974 17 6 0.1838 -6.6552 0.0480 18 1 -0.3748 -5.7309 0.0531 19 6 -0.4752 -7.8597 0.1746 20 7 0.2051 -8.9851 0.1690 21 14 -2.3340 -7.8928 0.3555 22 1 -2.8585 -6.5036 0.3327 23 1 -2.9270 -8.6636 -0.7668 24 1 -2.6946 -8.5375 1.6438 25 6 1.6482 -4.5068 -1.2645 26 6 2.2209 -3.0874 -1.2636 27 1 -0.3634 0.0890 -1.0238 28 1 -0.3634 -0.9310 0.4349 29 1 -0.3634 0.8422 0.5889 30 1 1.0387 2.8573 -0.0013 31 1 5.2456 3.5838 -0.0020 32 1 5.6875 1.1693 -0.0017 33 1 3.4269 -3.1834 1.1132 34 1 2.0299 -2.6204 2.0625 35 1 0.6792 -4.5095 1.2202 36 1 2.1607 -5.1077 2.0057 37 1 1.9659 -7.1029 -1.0372 38 1 2.1388 -7.1679 0.7332 39 1 -0.2585 -9.8326 0.2577 40 1 0.5601 -4.4598 -1.2243 41 1 1.9571 -5.0229 -2.1736 42 1 1.8263 -2.5355 -2.1168 43 1 3.3078 -3.1334 -1.3315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601261846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:48 Heat of formation + Delta-G solvation = 38.460630 kcal Electronic energy + Delta-G solvation = -26412.970937 eV Core-core repulsion = 22601.125531 eV Total energy + Delta-G solvation = -3811.845407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.90580 -43.28667 -40.33350 -38.19530 -36.48282 -35.15795 -34.35500 -31.97051 -31.63527 -30.41319 -28.86263 -27.94916 -26.86598 -24.57045 -24.18387 -23.30499 -23.19218 -21.65782 -20.60143 -19.00156 -18.62566 -18.38236 -17.79793 -17.23623 -17.03418 -16.58425 -16.50517 -16.02268 -15.88739 -15.71578 -15.66473 -15.20872 -14.96000 -14.71924 -14.16362 -14.11152 -14.06935 -13.76189 -13.58983 -13.45185 -13.02702 -12.79556 -12.64694 -12.52302 -12.32042 -12.22588 -12.11596 -11.81948 -11.76372 -11.52940 -11.45665 -11.18404 -10.59628 -10.03998 -9.43157 -9.09115 -9.04192 -8.13892 -6.32881 -0.32147 0.29426 1.23781 1.37908 1.39902 1.43756 1.50849 2.38975 2.61607 2.62455 3.09496 3.11762 3.27811 3.33308 3.66100 3.81319 3.92745 4.06406 4.09861 4.15263 4.21267 4.35607 4.39532 4.40660 4.46138 4.58155 4.66407 4.73231 4.76264 4.83708 4.95635 5.05462 5.06449 5.11091 5.21552 5.24019 5.35899 5.38110 5.52955 5.59709 5.75964 5.77812 6.03113 6.22162 6.31835 6.47564 6.71558 6.87449 7.38675 8.89084 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.029329 B = 0.002743 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.464662 B =10204.825936 C =10820.298543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.474 5.474 3 C 0.063 3.937 4 C -0.142 4.142 5 C 0.109 3.891 6 F -0.136 7.136 7 C -0.148 4.148 8 C -0.040 4.040 9 C 0.019 3.981 10 N -0.532 5.532 11 C 0.450 3.550 12 N -0.473 5.473 13 C 0.086 3.914 14 C 0.072 3.928 15 N -0.545 5.545 16 C 0.201 3.799 17 C -0.552 4.552 18 H 0.061 0.939 19 C 0.011 3.989 20 N -0.927 5.927 21 Si 0.957 3.043 22 H -0.265 1.265 23 H -0.281 1.281 24 H -0.280 1.280 25 C 0.070 3.930 26 C 0.086 3.914 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.154 0.846 31 H 0.170 0.830 32 H 0.154 0.846 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.006 0.994 38 H 0.009 0.991 39 H 0.264 0.736 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 25.041 -0.340 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.165 5.165 3 C -0.048 4.048 4 C -0.164 4.164 5 C 0.088 3.912 6 F -0.115 7.115 7 C -0.169 4.169 8 C -0.060 4.060 9 C -0.101 4.101 10 N -0.256 5.256 11 C 0.095 3.905 12 N -0.199 5.199 13 C -0.041 4.041 14 C -0.057 4.057 15 N -0.269 5.269 16 C 0.074 3.926 17 C -0.591 4.591 18 H 0.079 0.921 19 C -0.188 4.188 20 N -0.567 5.567 21 Si 0.783 3.217 22 H -0.189 1.189 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.059 4.059 26 C -0.041 4.041 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.172 0.828 31 H 0.188 0.812 32 H 0.171 0.829 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.024 0.976 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.547 24.344 -0.325 24.603 hybrid contribution -1.832 -0.188 0.093 1.844 sum 1.715 24.155 -0.231 24.217 Atomic orbital electron populations 1.22223 0.73673 1.05821 1.04712 1.45370 1.08469 1.03524 1.59095 1.18494 0.90856 0.88948 1.06462 1.19800 1.00552 0.88304 1.07728 1.17226 0.93665 0.76972 1.03373 1.91509 1.95508 1.30499 1.93974 1.21117 0.95902 0.95657 1.04240 1.20357 0.98162 0.90487 0.96976 1.19418 0.93482 0.90116 1.07098 1.70994 1.18135 1.12014 1.24442 1.20935 0.83766 0.87591 0.98177 1.58872 1.58794 0.96510 1.05700 1.22129 0.98406 0.92807 0.90727 1.21907 0.98530 0.92138 0.93139 1.62616 1.58576 1.03434 1.02308 1.19401 0.92858 0.84699 0.95601 1.21991 0.94169 0.92672 1.50236 0.92125 1.25806 1.02959 0.95324 0.94719 1.70075 1.37458 0.98171 1.51001 0.85520 0.80198 0.78371 0.77654 1.18867 1.20644 1.20625 1.21940 0.97759 0.91953 0.94281 1.22136 0.99312 0.93417 0.89208 0.89515 0.88807 0.87776 0.82821 0.81244 0.82860 0.93095 0.89515 0.94530 0.90926 0.97604 0.97290 0.92680 0.94663 0.90605 0.89334 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 11.13 127.77 1.42 2.67 16 2 N -0.47 -11.23 3.23 -541.34 -1.75 -12.98 16 3 C 0.06 1.47 6.87 38.72 0.27 1.73 16 4 C -0.14 -2.60 10.01 22.35 0.22 -2.38 16 5 C 0.11 1.91 7.29 22.40 0.16 2.07 16 6 F -0.14 -2.39 17.26 44.97 0.78 -1.61 16 7 C -0.15 -2.34 9.99 22.29 0.22 -2.11 16 8 C -0.04 -0.80 10.10 22.49 0.23 -0.57 16 9 C 0.02 0.49 7.22 39.38 0.28 0.78 16 10 N -0.53 -16.33 11.14 -190.29 -2.12 -18.45 16 11 C 0.45 12.93 6.25 260.49 1.63 14.56 16 12 N -0.47 -14.21 4.50 -706.32 -3.18 -17.39 16 13 C 0.09 2.72 5.47 86.31 0.47 3.19 16 14 C 0.07 2.70 5.24 86.31 0.45 3.15 16 15 N -0.55 -22.89 4.92 -900.28 -4.43 -27.32 16 16 C 0.20 10.30 5.14 85.56 0.44 10.74 16 17 C -0.55 -29.45 7.66 25.60 0.20 -29.26 16 18 H 0.06 3.17 5.82 -2.91 -0.02 3.16 16 19 C 0.01 0.62 5.46 84.66 0.46 1.08 16 20 N -0.93 -54.22 13.29 21.45 0.28 -53.94 16 21 Si 0.96 42.73 29.54 68.60 2.03 44.76 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 C 0.07 2.56 5.32 86.31 0.46 3.02 16 26 C 0.09 2.67 5.52 86.31 0.48 3.14 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.69 7.99 -2.39 -0.02 1.67 16 29 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 31 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.05 1.70 8.09 -2.39 -0.02 1.68 16 34 H 0.09 2.45 8.13 -2.39 -0.02 2.43 16 35 H 0.04 1.49 6.62 -2.39 -0.02 1.47 16 36 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 37 H 0.01 0.32 8.12 -2.39 -0.02 0.30 16 38 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 40 H 0.04 1.40 6.78 -2.39 -0.02 1.39 16 41 H 0.08 2.77 8.12 -2.39 -0.02 2.75 16 42 H 0.09 2.42 8.13 -2.38 -0.02 2.40 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -64.60 354.85 0.03 -64.57 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.02 Total: 10.54 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 7.40 Total: 11.81 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -11.19 Total: -130.07 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -64.60 0.03 -64.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.033 kcal (2) G-P(sol) polarization free energy of solvation -64.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds