Wall clock time and date at job start Tue Mar 31 2020 12:41:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 O 1.21280 * 120.00088 * 2 1
4 4 N 1.34776 * 119.99834 * 180.02562 * 2 1 3
5 5 C 1.46503 * 119.99871 * 179.97438 * 4 2 1
6 6 C 1.53116 * 109.57122 * 274.70956 * 5 4 2
7 7 C 1.53042 * 109.27913 * 182.40768 * 6 5 4
8 8 N 1.46852 * 109.51839 * 59.18083 * 7 6 5
9 9 C 1.46902 * 110.99671 * 174.16007 * 8 7 6
10 10 C 1.50701 * 109.47040 * 169.99746 * 9 8 7
11 11 C 1.38297 * 119.93136 * 269.73251 * 10 9 8
12 12 C 1.38107 * 120.06833 * 179.72556 * 11 10 9
13 13 C 1.38880 * 119.92632 * 0.54348 * 12 11 10
14 14 O 1.35753 * 120.06540 * 179.74892 * 13 12 11
15 15 C 1.34833 * 116.99577 * 174.44188 * 14 13 12
16 16 H 1.07997 * 120.00098 * 5.05387 * 15 14 13
17 17 C 1.38653 * 119.99745 * 185.05409 * 15 14 13
18 18 N 1.31563 * 119.99980 * 0.02562 * 17 15 14
19 19 Si 1.86798 * 120.00128 * 179.97438 * 17 15 14
20 20 H 1.48497 * 109.46799 * 90.00093 * 19 17 15
21 21 H 1.48501 * 109.47460 * 210.00163 * 19 17 15
22 22 H 1.48504 * 109.47160 * 330.00199 * 19 17 15
23 23 C 1.38884 * 119.86249 * 359.72687 * 13 12 11
24 24 C 1.38089 * 119.93087 * 0.02562 * 23 13 12
25 25 C 1.46844 * 111.19753 * 298.25545 * 8 7 6
26 26 C 1.53045 * 109.52154 * 61.74630 * 25 8 7
27 27 H 1.09008 * 109.47041 * 270.00212 * 1 2 3
28 28 H 1.09005 * 109.47079 * 29.99681 * 1 2 3
29 29 H 1.08990 * 109.47442 * 150.00011 * 1 2 3
30 30 H 0.97001 * 120.00277 * 359.97438 * 4 2 1
31 31 H 1.09005 * 109.52229 * 34.86646 * 5 4 2
32 32 H 1.09002 * 109.50419 * 62.47338 * 6 5 4
33 33 H 1.09001 * 109.50856 * 302.35269 * 6 5 4
34 34 H 1.08997 * 109.46040 * 299.16533 * 7 6 5
35 35 H 1.08993 * 109.46272 * 179.19420 * 7 6 5
36 36 H 1.08997 * 109.47204 * 290.00245 * 9 8 7
37 37 H 1.09003 * 109.46975 * 50.00530 * 9 8 7
38 38 H 1.07999 * 119.96581 * 359.97438 * 11 10 9
39 39 H 1.07999 * 120.03226 * 180.27139 * 12 11 10
40 40 H 0.97001 * 119.99997 * 179.97438 * 18 17 15
41 41 H 1.07994 * 120.02996 * 179.97438 * 23 13 12
42 42 H 1.08002 * 119.96634 * 180.02562 * 24 23 13
43 43 H 1.08997 * 109.45945 * 181.75715 * 25 8 7
44 44 H 1.08994 * 109.46812 * 301.74108 * 25 8 7
45 45 H 1.08996 * 109.49942 * 60.76179 * 26 25 8
46 46 H 1.09002 * 109.49968 * 180.83899 * 26 25 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0503 0.0000
4 7 2.1808 -1.1672 -0.0005
5 6 3.6459 -1.1672 -0.0011
6 6 4.1582 -1.0485 -1.4391
7 6 5.6874 -1.1096 -1.4373
8 7 6.1270 -2.3795 -0.8453
9 6 7.5840 -2.5339 -0.9526
10 6 8.0261 -3.7149 -0.1275
11 6 8.3797 -3.5372 1.1976
12 6 8.7799 -4.6185 1.9579
13 6 8.8378 -5.8833 1.3873
14 8 9.2356 -6.9473 2.1307
15 6 9.1594 -8.1620 1.5506
16 1 8.8724 -8.2479 0.5130
17 6 9.4494 -9.3010 2.2862
18 7 9.7986 -9.1964 3.5503
19 14 9.3431 -10.9840 1.4828
20 1 10.6589 -11.3333 0.8897
21 1 8.9757 -11.9977 2.5039
22 1 8.3102 -10.9590 0.4161
23 6 8.4874 -6.0574 0.0547
24 6 8.0832 -4.9731 -0.6988
25 6 5.6870 -2.4950 0.5508
26 6 4.1577 -2.4752 0.6084
27 1 -0.3633 0.0000 1.0277
28 1 -0.3633 0.8900 -0.5138
29 1 -0.3634 -0.8899 -0.5138
30 1 1.6959 -2.0073 -0.0005
31 1 4.0104 -0.3244 0.5863
32 1 3.8326 -0.0991 -1.8642
33 1 3.7619 -1.8701 -2.0357
34 1 6.0833 -0.2797 -0.8520
35 1 6.0548 -1.0396 -2.4611
36 1 7.8563 -2.6967 -1.9954
37 1 8.0729 -1.6312 -0.5861
38 1 8.3391 -2.5526 1.6394
39 1 9.0517 -4.4798 2.9939
40 1 10.0011 -9.9932 4.0651
41 1 8.5318 -7.0397 -0.3919
42 1 7.8102 -5.1080 -1.7350
43 1 6.0541 -3.4314 0.9710
44 1 6.0827 -1.6586 1.1268
45 1 3.7615 -3.3193 0.0440
46 1 3.8317 -2.5460 1.6461
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000731211814.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:41:26
Heat of formation + Delta-G solvation = -41.980743 kcal
Electronic energy + Delta-G solvation = -26145.047128 eV
Core-core repulsion = 22420.881076 eV
Total energy + Delta-G solvation = -3724.166053 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.25679 -39.34223 -38.44440 -36.66299 -35.03038 -32.60036 -32.10425 -31.01672
-30.27911 -30.02290 -28.72070 -25.87409 -24.85750 -23.29685 -22.69338 -21.95559
-20.77094 -20.38071 -19.83059 -18.00035 -17.10751 -16.96299 -16.74985 -15.69567
-15.41105 -15.26447 -14.82264 -14.55205 -14.35649 -14.12730 -13.80624 -13.72101
-13.64142 -13.45850 -13.18378 -12.89071 -12.74554 -12.61629 -12.50278 -12.24664
-11.88717 -11.65119 -11.44813 -11.28507 -11.24954 -11.02186 -10.77482 -10.70460
-10.66120 -10.44840 -10.38795 -10.05265 -9.35123 -9.27410 -8.85551 -8.25071
-8.18247 -7.18690 -6.47512 -4.06264 2.17972 2.25597 2.38594 2.96301
3.10952 3.12111 3.16910 3.94450 3.99355 4.46412 4.58593 4.66256
4.70447 4.87838 4.96578 5.04002 5.06065 5.08723 5.23517 5.24352
5.33786 5.40203 5.41056 5.46594 5.53187 5.60731 5.72287 5.77726
5.82022 5.87154 5.90731 5.96509 6.08276 6.17983 6.19290 6.29628
6.41493 6.67042 6.88100 7.01965 7.09425 7.16797 7.26235 7.27803
7.38786 7.42475 7.79673 7.97368 7.97631 8.98218 9.68030 10.70399
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.020402 B = 0.002400 C = 0.002290
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1372.068983 B =11662.509049 C =12224.481131
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.509 3.491
3 O -0.550 6.550
4 N -0.726 5.726
5 C 0.142 3.858
6 C -0.123 4.123
7 C 0.058 3.942
8 N -0.533 5.533
9 C 0.114 3.886
10 C -0.187 4.187
11 C -0.069 4.069
12 C -0.194 4.194
13 C 0.156 3.844
14 O -0.178 6.178
15 C -0.391 4.391
16 H 0.092 0.908
17 C 0.039 3.961
18 N -0.862 5.862
19 Si 0.941 3.059
20 H -0.273 1.273
21 H -0.277 1.277
22 H -0.267 1.267
23 C -0.236 4.236
24 C -0.049 4.049
25 C 0.056 3.944
26 C -0.123 4.123
27 H 0.092 0.908
28 H 0.091 0.909
29 H 0.079 0.921
30 H 0.401 0.599
31 H 0.083 0.917
32 H 0.067 0.933
33 H 0.072 0.928
34 H 0.032 0.968
35 H 0.076 0.924
36 H 0.074 0.926
37 H 0.032 0.968
38 H 0.107 0.893
39 H 0.116 0.884
40 H 0.270 0.730
41 H 0.126 0.874
42 H 0.108 0.892
43 H 0.098 0.902
44 H 0.031 0.969
45 H 0.077 0.923
46 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.591 13.571 -8.533 21.677
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C 0.296 3.704
3 O -0.427 6.427
4 N -0.377 5.377
5 C 0.037 3.963
6 C -0.161 4.161
7 C -0.071 4.071
8 N -0.258 5.258
9 C -0.013 4.013
10 C -0.188 4.188
11 C -0.087 4.087
12 C -0.213 4.213
13 C 0.102 3.898
14 O -0.081 6.081
15 C -0.468 4.468
16 H 0.110 0.890
17 C -0.165 4.165
18 N -0.497 5.497
19 Si 0.766 3.234
20 H -0.199 1.199
21 H -0.203 1.203
22 H -0.192 1.192
23 C -0.255 4.255
24 C -0.068 4.068
25 C -0.072 4.072
26 C -0.161 4.161
27 H 0.111 0.889
28 H 0.110 0.890
29 H 0.098 0.902
30 H 0.235 0.765
31 H 0.101 0.899
32 H 0.086 0.914
33 H 0.091 0.909
34 H 0.050 0.950
35 H 0.094 0.906
36 H 0.093 0.907
37 H 0.050 0.950
38 H 0.125 0.875
39 H 0.134 0.866
40 H 0.080 0.920
41 H 0.144 0.856
42 H 0.126 0.874
43 H 0.116 0.884
44 H 0.049 0.951
45 H 0.095 0.905
46 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -14.225 13.775 -8.366 21.496
hybrid contribution 0.074 -0.678 0.027 0.682
sum -14.150 13.097 -8.339 21.007
Atomic orbital electron populations
1.21891 0.91849 1.04810 1.04746 1.20831 0.90583 0.83620 0.75384
1.90723 1.70841 1.31463 1.49714 1.46218 1.07474 1.08695 1.75293
1.21087 0.79021 0.99195 0.96958 1.21931 0.95303 1.02299 0.96610
1.22022 0.94818 0.90318 0.99949 1.62095 1.13051 1.32871 1.17811
1.20805 0.85973 0.95125 0.99386 1.19083 1.10494 0.94409 0.94798
1.20505 0.98000 0.97023 0.93207 1.20173 1.10106 0.90735 1.00271
1.19401 0.91302 0.88813 0.90302 1.83978 1.71420 1.13246 1.39421
1.21330 1.48463 0.80238 0.96724 0.89026 1.25296 0.96478 0.99246
0.95521 1.70041 1.42292 1.30200 1.07188 0.85713 0.78953 0.80167
0.78616 1.19875 1.20252 1.19167 1.21161 1.09883 0.99697 0.94757
1.20572 0.96216 0.91629 0.98370 1.22132 0.93484 1.02574 0.89026
1.21884 0.96520 0.96659 1.01033 0.88902 0.88993 0.90185 0.76478
0.89869 0.91392 0.90902 0.94955 0.90601 0.90717 0.94955 0.87533
0.86621 0.92008 0.85603 0.87404 0.88412 0.95118 0.90473 0.91043
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.93 10.30 36.01 0.37 -0.55 16
2 C 0.51 4.89 7.91 -10.99 -0.09 4.81 16
3 O -0.55 -7.84 16.76 5.56 0.09 -7.75 16
4 N -0.73 -5.98 5.08 -53.69 -0.27 -6.25 16
5 C 0.14 1.43 2.52 -67.81 -0.17 1.26 16
6 C -0.12 -1.25 5.68 -26.65 -0.15 -1.40 16
7 C 0.06 0.62 5.42 -3.83 -0.02 0.60 16
8 N -0.53 -6.64 4.80 -236.11 -1.13 -7.78 16
9 C 0.11 1.51 5.43 -4.97 -0.03 1.48 16
10 C -0.19 -3.04 4.12 -104.58 -0.43 -3.47 16
11 C -0.07 -1.17 7.80 -39.61 -0.31 -1.48 16
12 C -0.19 -3.96 9.99 -39.39 -0.39 -4.36 16
13 C 0.16 3.68 6.65 -39.10 -0.26 3.42 16
14 O -0.18 -4.99 9.76 0.03 0.00 -4.99 16
15 C -0.39 -10.78 9.49 30.89 0.29 -10.49 16
16 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16
17 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16
18 N -0.86 -25.04 13.67 55.48 0.76 -24.29 16
19 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16
20 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16
21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16
22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16
23 C -0.24 -4.99 9.17 -39.40 -0.36 -5.35 16
24 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16
25 C 0.06 0.70 4.58 -3.83 -0.02 0.68 16
26 C -0.12 -1.26 5.57 -26.65 -0.15 -1.40 16
27 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16
28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16
30 H 0.40 2.24 8.61 -40.82 -0.35 1.89 16
31 H 0.08 1.01 7.58 -51.93 -0.39 0.62 16
32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16
35 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16
36 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16
37 H 0.03 0.41 8.02 -51.93 -0.42 0.00 16
38 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16
39 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16
40 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16
41 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16
42 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16
43 H 0.10 1.45 5.65 -51.93 -0.29 1.16 16
44 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16
45 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16
46 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16
LS Contribution 373.42 15.07 5.63 5.63
Total: -1.00 -32.29 373.42 -9.22 -41.51
By element:
Atomic # 1 Polarization: 12.29 SS G_CDS: -7.07 Total: 5.22 kcal
Atomic # 6 Polarization: -14.35 SS G_CDS: -2.19 Total: -16.54 kcal
Atomic # 7 Polarization: -37.67 SS G_CDS: -0.65 Total: -38.31 kcal
Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal
Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -32.29 -9.22 -41.51 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000731211814.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.474 kcal
(2) G-P(sol) polarization free energy of solvation -32.290 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.764 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.981 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds