Wall clock time and date at job start Tue Mar 31 2020 12:41:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 O 1.21280 * 120.00088 * 2 1
4 4 N 1.34776 * 119.99834 * 180.02562 * 2 1 3
5 5 C 1.46503 * 119.99871 * 179.97438 * 4 2 1
6 6 C 1.53116 * 109.57122 * 274.70956 * 5 4 2
7 7 C 1.53042 * 109.27913 * 182.40768 * 6 5 4
8 8 N 1.46852 * 109.51839 * 59.18083 * 7 6 5
9 9 C 1.46902 * 110.99671 * 174.16007 * 8 7 6
10 10 C 1.50701 * 109.47040 * 169.99746 * 9 8 7
11 11 C 1.38297 * 119.93136 * 269.73251 * 10 9 8
12 12 C 1.38107 * 120.06833 * 179.72556 * 11 10 9
13 13 C 1.38880 * 119.92632 * 0.54348 * 12 11 10
14 14 O 1.35753 * 120.06540 * 179.74892 * 13 12 11
15 15 C 1.34833 * 116.99577 * 174.44188 * 14 13 12
16 16 H 1.07997 * 120.00098 * 5.05387 * 15 14 13
17 17 C 1.38653 * 119.99745 * 185.05409 * 15 14 13
18 18 N 1.31563 * 119.99980 * 0.02562 * 17 15 14
19 19 Si 1.86798 * 120.00128 * 179.97438 * 17 15 14
20 20 H 1.48497 * 109.46799 * 90.00093 * 19 17 15
21 21 H 1.48501 * 109.47460 * 210.00163 * 19 17 15
22 22 H 1.48504 * 109.47160 * 330.00199 * 19 17 15
23 23 C 1.38884 * 119.86249 * 359.72687 * 13 12 11
24 24 C 1.38089 * 119.93087 * 0.02562 * 23 13 12
25 25 C 1.46844 * 111.19753 * 298.25545 * 8 7 6
26 26 C 1.53045 * 109.52154 * 61.74630 * 25 8 7
27 27 H 1.09008 * 109.47041 * 270.00212 * 1 2 3
28 28 H 1.09005 * 109.47079 * 29.99681 * 1 2 3
29 29 H 1.08990 * 109.47442 * 150.00011 * 1 2 3
30 30 H 0.97001 * 120.00277 * 359.97438 * 4 2 1
31 31 H 1.09005 * 109.52229 * 34.86646 * 5 4 2
32 32 H 1.09002 * 109.50419 * 62.47338 * 6 5 4
33 33 H 1.09001 * 109.50856 * 302.35269 * 6 5 4
34 34 H 1.08997 * 109.46040 * 299.16533 * 7 6 5
35 35 H 1.08993 * 109.46272 * 179.19420 * 7 6 5
36 36 H 1.08997 * 109.47204 * 290.00245 * 9 8 7
37 37 H 1.09003 * 109.46975 * 50.00530 * 9 8 7
38 38 H 1.07999 * 119.96581 * 359.97438 * 11 10 9
39 39 H 1.07999 * 120.03226 * 180.27139 * 12 11 10
40 40 H 0.97001 * 119.99997 * 179.97438 * 18 17 15
41 41 H 1.07994 * 120.02996 * 179.97438 * 23 13 12
42 42 H 1.08002 * 119.96634 * 180.02562 * 24 23 13
43 43 H 1.08997 * 109.45945 * 181.75715 * 25 8 7
44 44 H 1.08994 * 109.46812 * 301.74108 * 25 8 7
45 45 H 1.08996 * 109.49942 * 60.76179 * 26 25 8
46 46 H 1.09002 * 109.49968 * 180.83899 * 26 25 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0503 0.0000
4 7 2.1808 -1.1672 -0.0005
5 6 3.6459 -1.1672 -0.0011
6 6 4.1582 -1.0485 -1.4391
7 6 5.6874 -1.1096 -1.4373
8 7 6.1270 -2.3795 -0.8453
9 6 7.5840 -2.5339 -0.9526
10 6 8.0261 -3.7149 -0.1275
11 6 8.3797 -3.5372 1.1976
12 6 8.7799 -4.6185 1.9579
13 6 8.8378 -5.8833 1.3873
14 8 9.2356 -6.9473 2.1307
15 6 9.1594 -8.1620 1.5506
16 1 8.8724 -8.2479 0.5130
17 6 9.4494 -9.3010 2.2862
18 7 9.7986 -9.1964 3.5503
19 14 9.3431 -10.9840 1.4828
20 1 10.6589 -11.3333 0.8897
21 1 8.9757 -11.9977 2.5039
22 1 8.3102 -10.9590 0.4161
23 6 8.4874 -6.0574 0.0547
24 6 8.0832 -4.9731 -0.6988
25 6 5.6870 -2.4950 0.5508
26 6 4.1577 -2.4752 0.6084
27 1 -0.3633 0.0000 1.0277
28 1 -0.3633 0.8900 -0.5138
29 1 -0.3634 -0.8899 -0.5138
30 1 1.6959 -2.0073 -0.0005
31 1 4.0104 -0.3244 0.5863
32 1 3.8326 -0.0991 -1.8642
33 1 3.7619 -1.8701 -2.0357
34 1 6.0833 -0.2797 -0.8520
35 1 6.0548 -1.0396 -2.4611
36 1 7.8563 -2.6967 -1.9954
37 1 8.0729 -1.6312 -0.5861
38 1 8.3391 -2.5526 1.6394
39 1 9.0517 -4.4798 2.9939
40 1 10.0011 -9.9932 4.0651
41 1 8.5318 -7.0397 -0.3919
42 1 7.8102 -5.1080 -1.7350
43 1 6.0541 -3.4314 0.9710
44 1 6.0827 -1.6586 1.1268
45 1 3.7615 -3.3193 0.0440
46 1 3.8317 -2.5460 1.6461
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000731211814.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:41:26
Heat of formation + Delta-G solvation = -64.478856 kcal
Electronic energy + Delta-G solvation = -26146.022720 eV
Core-core repulsion = 22420.881076 eV
Total energy + Delta-G solvation = -3725.141644 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.19660 -40.74571 -39.65767 -38.16744 -36.04112 -34.32752 -33.29017 -32.00211
-31.73694 -31.02196 -29.72917 -27.58441 -26.24068 -24.29504 -23.72009 -23.52044
-21.85655 -21.49665 -20.77524 -19.81894 -18.80412 -17.84828 -17.58348 -16.59710
-16.54890 -16.46162 -16.20361 -16.10677 -15.54286 -15.49202 -15.17507 -15.02222
-14.79647 -14.41856 -14.40703 -14.21149 -14.01594 -13.58530 -13.36371 -13.27723
-13.00954 -12.95187 -12.88464 -12.49176 -12.39940 -12.23052 -12.14252 -12.12614
-11.98604 -11.76223 -11.46500 -11.15416 -10.88434 -10.77860 -10.06505 -9.74839
-9.28818 -8.84130 -8.46175 -6.14074 0.60597 0.68117 1.36048 1.44927
1.53437 1.66007 2.18610 2.28395 2.74387 3.03712 3.29710 3.52726
3.69456 3.82425 3.97236 4.01866 4.06008 4.12407 4.20055 4.27762
4.40328 4.46981 4.51409 4.53290 4.61290 4.65603 4.67776 4.71645
4.75640 4.85128 4.94498 4.98912 5.04714 5.09958 5.12785 5.14760
5.17584 5.29395 5.32968 5.52978 5.57431 5.73335 5.82570 6.04148
6.11727 6.17689 6.26498 6.61105 6.98777 7.29110 7.79803 8.76992
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.020402 B = 0.002400 C = 0.002290
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1372.068983 B =11662.509049 C =12224.481131
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.503 3.497
3 O -0.603 6.603
4 N -0.715 5.715
5 C 0.146 3.854
6 C -0.115 4.115
7 C 0.060 3.940
8 N -0.535 5.535
9 C 0.114 3.886
10 C -0.157 4.157
11 C -0.058 4.058
12 C -0.204 4.204
13 C 0.116 3.884
14 O -0.233 6.233
15 C -0.411 4.411
16 H 0.102 0.898
17 C -0.024 4.024
18 N -0.921 5.921
19 Si 1.018 2.982
20 H -0.264 1.264
21 H -0.272 1.272
22 H -0.252 1.252
23 C -0.242 4.242
24 C -0.047 4.047
25 C 0.055 3.945
26 C -0.114 4.114
27 H 0.107 0.893
28 H 0.090 0.910
29 H 0.107 0.893
30 H 0.416 0.584
31 H 0.061 0.939
32 H 0.061 0.939
33 H 0.079 0.921
34 H 0.030 0.970
35 H 0.090 0.910
36 H 0.093 0.907
37 H 0.046 0.954
38 H 0.137 0.863
39 H 0.110 0.890
40 H 0.272 0.728
41 H 0.118 0.882
42 H 0.139 0.861
43 H 0.073 0.927
44 H 0.031 0.969
45 H 0.082 0.918
46 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.617 14.582 -11.137 24.755
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.292 3.708
3 O -0.484 6.484
4 N -0.367 5.367
5 C 0.041 3.959
6 C -0.154 4.154
7 C -0.069 4.069
8 N -0.260 5.260
9 C -0.012 4.012
10 C -0.158 4.158
11 C -0.077 4.077
12 C -0.223 4.223
13 C 0.065 3.935
14 O -0.139 6.139
15 C -0.488 4.488
16 H 0.119 0.881
17 C -0.221 4.221
18 N -0.560 5.560
19 Si 0.837 3.163
20 H -0.189 1.189
21 H -0.197 1.197
22 H -0.176 1.176
23 C -0.261 4.261
24 C -0.066 4.066
25 C -0.073 4.073
26 C -0.152 4.152
27 H 0.125 0.875
28 H 0.109 0.891
29 H 0.126 0.874
30 H 0.254 0.746
31 H 0.079 0.921
32 H 0.079 0.921
33 H 0.097 0.903
34 H 0.048 0.952
35 H 0.108 0.892
36 H 0.111 0.889
37 H 0.064 0.936
38 H 0.155 0.845
39 H 0.128 0.872
40 H 0.081 0.919
41 H 0.135 0.865
42 H 0.156 0.844
43 H 0.091 0.909
44 H 0.049 0.951
45 H 0.101 0.899
46 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -16.288 14.808 -11.008 24.612
hybrid contribution 0.601 -0.628 0.720 1.129
sum -15.687 14.180 -10.288 23.516
Atomic orbital electron populations
1.21900 0.88289 1.06172 1.06063 1.21619 0.92289 0.82891 0.74020
1.90701 1.72191 1.33299 1.52241 1.46132 1.06786 1.09339 1.74406
1.20900 0.80209 0.98098 0.96682 1.21846 0.94971 1.02112 0.96441
1.22060 0.95111 0.89197 1.00492 1.62098 1.12225 1.34062 1.17663
1.20860 0.86755 0.93868 0.99761 1.19522 1.06655 0.95114 0.94471
1.20820 0.96230 0.97222 0.93391 1.20388 1.10471 0.90775 1.00657
1.19927 0.93146 0.88900 0.91508 1.83944 1.74555 1.14227 1.41223
1.21812 1.48709 0.80831 0.97400 0.88070 1.26586 0.95891 1.03541
0.96105 1.70189 1.45126 1.31449 1.09195 0.84594 0.79563 0.74257
0.77862 1.18878 1.19657 1.17575 1.21246 1.10144 1.00607 0.94135
1.20888 0.95151 0.91042 0.99504 1.22086 0.94991 1.01178 0.89081
1.21784 0.95017 0.96818 1.01577 0.87461 0.89071 0.87393 0.74649
0.92110 0.92073 0.90279 0.95180 0.89163 0.88887 0.93597 0.84476
0.87155 0.91891 0.86451 0.84368 0.90851 0.95087 0.89948 0.90481
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.31 10.30 71.24 0.73 -0.58 16
2 C 0.50 8.82 7.91 87.66 0.69 9.51 16
3 O -0.60 -16.90 16.76 -3.03 -0.05 -16.95 16
4 N -0.71 -10.18 5.08 -442.16 -2.25 -12.43 16
5 C 0.15 2.68 2.52 45.07 0.11 2.79 16
6 C -0.11 -2.05 5.68 30.65 0.17 -1.87 16
7 C 0.06 1.09 5.42 86.33 0.47 1.56 16
8 N -0.54 -11.50 4.80 -900.92 -4.32 -15.82 16
9 C 0.11 2.57 5.43 85.56 0.46 3.03 16
10 C -0.16 -4.65 4.12 -19.83 -0.08 -4.74 16
11 C -0.06 -1.88 7.80 22.25 0.17 -1.71 16
12 C -0.20 -8.50 9.99 22.39 0.22 -8.28 16
13 C 0.12 5.67 6.65 22.58 0.15 5.82 16
14 O -0.23 -13.94 9.76 -22.80 -0.22 -14.16 16
15 C -0.41 -23.80 9.49 67.92 0.64 -23.15 16
16 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16
17 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16
18 N -0.92 -56.43 13.67 21.61 0.30 -56.13 16
19 Si 1.02 42.54 29.55 68.60 2.03 44.57 16
20 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16
21 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16
22 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16
23 C -0.24 -10.31 9.17 22.39 0.21 -10.11 16
24 C -0.05 -1.58 9.69 22.25 0.22 -1.36 16
25 C 0.06 1.24 4.58 86.33 0.40 1.64 16
26 C -0.11 -2.08 5.57 30.65 0.17 -1.90 16
27 H 0.11 0.59 8.14 -2.38 -0.02 0.58 16
28 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16
29 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16
30 H 0.42 3.39 8.61 -92.71 -0.80 2.60 16
31 H 0.06 1.42 7.58 -2.38 -0.02 1.41 16
32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
34 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16
35 H 0.09 1.43 8.12 -2.39 -0.02 1.42 16
36 H 0.09 1.85 8.08 -2.39 -0.02 1.84 16
37 H 0.05 0.96 8.02 -2.39 -0.02 0.94 16
38 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16
39 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16
40 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16
41 H 0.12 5.12 5.64 -2.91 -0.02 5.10 16
42 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16
43 H 0.07 2.03 5.65 -2.39 -0.01 2.02 16
44 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16
45 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
46 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
Total: -1.00 -75.89 373.42 0.87 -75.01
By element:
Atomic # 1 Polarization: 25.96 SS G_CDS: 0.19 Total: 26.15 kcal
Atomic # 6 Polarization: -35.44 SS G_CDS: 5.21 Total: -30.23 kcal
Atomic # 7 Polarization: -78.11 SS G_CDS: -6.28 Total: -84.38 kcal
Atomic # 8 Polarization: -30.84 SS G_CDS: -0.27 Total: -31.11 kcal
Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal
Total: -75.89 0.87 -75.01 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000731211814.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.534 kcal
(2) G-P(sol) polarization free energy of solvation -75.887 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.353 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.013 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.479 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds