Wall clock time and date at job start Tue Mar 31 2020 12:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47555 * 2 1 4 4 C 1.36085 * 117.00051 * 180.02562 * 3 2 1 5 5 C 1.38541 * 120.00264 * 0.02562 * 4 3 2 6 6 C 1.38204 * 120.07127 * 179.74388 * 5 4 3 7 7 C 1.38863 * 120.07099 * 0.51215 * 6 5 4 8 8 N 1.39924 * 120.00292 * 179.73773 * 7 6 5 9 9 C 1.46504 * 119.99841 * 359.73328 * 8 7 6 10 10 C 1.52994 * 109.47344 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99894 * 10 9 8 12 12 C 1.47200 * 109.47451 * 294.99956 * 10 9 8 13 13 N 9.46465 * 158.63821 * 319.73285 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99738 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.38828 * 119.99852 * 359.47093 * 7 6 5 24 24 C 1.38512 * 119.92429 * 0.27077 * 23 7 6 25 25 O 1.35992 * 120.03189 * 179.97438 * 24 23 7 26 26 C 1.42904 * 116.99960 * 0.02562 * 25 24 23 27 27 C 1.53001 * 109.46850 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.46758 * 300.00067 * 1 2 3 29 29 H 1.08997 * 109.46868 * 59.99613 * 1 2 3 30 30 H 1.08999 * 109.47533 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46649 * 240.00193 * 2 1 3 32 32 H 1.09001 * 109.47321 * 120.00453 * 2 1 3 33 33 H 1.07996 * 119.96059 * 0.02562 * 5 4 3 34 34 H 1.08005 * 119.96423 * 180.28201 * 6 5 4 35 35 H 0.96994 * 120.00502 * 179.72553 * 8 7 6 36 36 H 1.08998 * 109.47354 * 59.99505 * 9 8 7 37 37 H 1.09002 * 109.47318 * 299.99727 * 9 8 7 38 38 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 39 39 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.03302 * 180.25069 * 23 7 6 42 42 H 1.08994 * 109.47271 * 299.99525 * 26 25 24 43 43 H 1.08999 * 109.46663 * 59.99859 * 26 25 24 44 44 H 1.09000 * 109.47491 * 300.00271 * 27 26 25 45 45 H 1.08999 * 109.47253 * 60.00648 * 27 26 25 46 46 H 1.09003 * 109.46732 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3556 1.5254 -0.0005 5 6 4.1995 0.4267 -0.0016 6 6 5.5698 0.6061 -0.0075 7 6 6.1038 1.8879 -0.0016 8 7 7.4915 2.0678 -0.0021 9 6 8.3810 0.9037 -0.0028 10 6 9.8368 1.3743 -0.0038 11 1 10.0018 2.0469 0.8380 12 6 10.1225 2.0834 -1.2617 13 7 10.3444 2.6306 -2.2283 14 6 10.7641 0.1638 0.1212 15 6 12.1906 0.6343 0.2437 16 1 12.4134 1.6911 0.2339 17 6 13.2106 -0.2841 0.3747 18 7 12.9392 -1.5709 0.3871 19 14 14.9779 0.2994 0.5343 20 1 15.3063 0.4969 1.9690 21 1 15.8897 -0.7187 -0.0465 22 1 15.1428 1.5837 -0.1926 23 6 5.2609 2.9910 -0.0009 24 6 3.8875 2.8112 -0.0004 25 8 3.0598 3.8902 0.0008 26 6 3.6752 5.1799 0.0009 27 6 2.5929 6.2613 0.0017 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.7860 -0.5709 -0.0024 34 1 6.2261 -0.2517 -0.0129 35 1 7.8645 2.9631 -0.0020 36 1 8.1930 0.3033 -0.8929 37 1 8.1937 0.3027 0.8871 38 1 10.6634 -0.4640 -0.7642 39 1 10.4939 -0.4111 1.0069 40 1 13.6569 -2.2170 0.4789 41 1 5.6757 3.9882 -0.0005 42 1 4.2961 5.2862 0.8904 43 1 4.2947 5.2869 -0.8896 44 1 1.9722 6.1550 -0.8880 45 1 1.9731 6.1545 0.8919 46 1 3.0623 7.2451 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732917711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:21 Heat of formation + Delta-G solvation = -39.216846 kcal Electronic energy + Delta-G solvation = -25521.383396 eV Core-core repulsion = 21797.337195 eV Total energy + Delta-G solvation = -3724.046201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53896 -38.58730 -38.20901 -36.72345 -34.74526 -33.56937 -32.22785 -31.71113 -31.40553 -29.98602 -28.10873 -26.33547 -24.62046 -23.74669 -23.26249 -22.01897 -21.34422 -21.14489 -18.64679 -17.53757 -17.27291 -16.64429 -16.39731 -16.27600 -15.86212 -15.72689 -14.89977 -14.74374 -14.48414 -14.04652 -14.02207 -13.60332 -13.24165 -13.01927 -12.99159 -12.83069 -12.78272 -12.64566 -12.45857 -12.29624 -12.15278 -11.88554 -11.76838 -11.46946 -11.32108 -11.19272 -11.02586 -10.92534 -10.81383 -10.79064 -10.64001 -10.41023 -9.72343 -9.39439 -9.34476 -8.53466 -8.40424 -6.99512 -6.17645 -4.21563 1.35633 1.69297 3.10845 3.23144 3.23902 3.31314 3.34786 3.44465 3.49586 3.61634 3.84542 4.34200 4.63368 4.69841 4.73896 4.77508 4.81710 4.93609 5.03385 5.06745 5.08092 5.20156 5.21352 5.29348 5.33498 5.41810 5.54219 5.56084 5.57011 5.57969 5.61151 5.77965 5.82971 5.87686 5.94382 6.20416 6.28170 6.33821 6.40744 6.58059 7.10011 7.30420 7.34401 7.40024 7.64329 7.76467 7.82078 8.12299 8.28249 8.82400 9.44472 10.93116 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.002413 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.381909 B =11601.182862 C =12871.325825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.312 6.312 4 C 0.034 3.966 5 C -0.121 4.121 6 C -0.195 4.195 7 C 0.231 3.769 8 N -0.745 5.745 9 C 0.131 3.869 10 C -0.003 4.003 11 H 0.108 0.892 12 C 0.238 3.762 13 N -0.466 5.466 14 C 0.034 3.966 15 C -0.530 4.530 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.254 4.254 24 C 0.148 3.852 25 O -0.306 6.306 26 C 0.053 3.947 27 C -0.150 4.150 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.398 0.602 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.029 0.971 39 H 0.042 0.958 40 H 0.264 0.736 41 H 0.130 0.870 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.368 6.214 2.446 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.227 6.227 4 C -0.012 4.012 5 C -0.140 4.140 6 C -0.218 4.218 7 C 0.126 3.874 8 N -0.375 5.375 9 C 0.006 3.994 10 C -0.025 4.025 11 H 0.125 0.875 12 C -0.079 4.079 13 N -0.143 5.143 14 C -0.005 4.005 15 C -0.568 4.568 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.277 4.277 24 C 0.101 3.899 25 O -0.219 6.219 26 C -0.022 4.022 27 C -0.208 4.208 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.232 0.768 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.148 0.852 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.201 6.836 0.993 24.207 hybrid contribution 1.632 0.176 0.442 1.700 sum -21.568 7.013 1.435 22.725 Atomic orbital electron populations 1.21742 0.93186 1.02455 1.03341 1.22675 0.95548 0.82838 1.00974 1.86122 1.18338 1.27911 1.90296 1.17875 0.82911 0.90864 1.09515 1.20787 0.93283 0.97123 1.02813 1.20423 0.94557 0.95686 1.11134 1.17454 0.83749 0.92885 0.93287 1.44888 1.01923 1.08772 1.81910 1.21537 0.87257 0.88057 1.02501 1.19478 0.94727 0.99844 0.88446 0.87458 1.28971 0.91891 0.92501 0.94533 1.80907 1.09823 1.11241 1.12296 1.19154 0.92557 0.89720 0.99034 1.21098 0.91185 0.93086 1.51426 0.92502 1.24950 0.99299 0.94838 0.94823 1.69931 1.32863 1.00503 1.49474 0.86573 0.84408 0.78629 0.78372 1.20404 1.21080 1.19889 1.20386 0.91048 0.98770 1.17523 1.17837 0.88150 0.84945 0.98929 1.86154 1.34190 1.12830 1.88776 1.22759 0.96629 0.81460 1.01379 1.21755 0.98927 0.96636 1.03435 0.91691 0.91715 0.90690 0.92485 0.92443 0.85076 0.85221 0.76789 0.91599 0.90100 0.95308 0.93965 0.92671 0.85197 0.92092 0.92156 0.91616 0.91588 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.50 5.46 37.16 0.20 0.70 16 3 O -0.31 -4.05 9.92 -34.62 -0.34 -4.40 16 4 C 0.03 0.46 6.70 -39.13 -0.26 0.20 16 5 C -0.12 -1.45 9.03 -39.48 -0.36 -1.81 16 6 C -0.20 -2.47 9.31 -39.36 -0.37 -2.83 16 7 C 0.23 3.03 6.65 -83.71 -0.56 2.47 16 8 N -0.75 -9.58 5.53 -58.60 -0.32 -9.90 16 9 C 0.13 1.81 4.28 -4.04 -0.02 1.79 16 10 C 0.00 -0.05 2.26 -93.41 -0.21 -0.26 16 11 H 0.11 1.65 8.14 -51.92 -0.42 1.23 16 12 C 0.24 4.59 13.44 -20.87 -0.28 4.31 16 13 N -0.47 -9.90 18.52 42.03 0.78 -9.12 16 14 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 15 C -0.53 -13.58 8.60 -34.44 -0.30 -13.88 16 16 H 0.06 1.45 7.59 -52.49 -0.40 1.05 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16 19 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.25 -3.21 8.88 -39.26 -0.35 -3.56 16 24 C 0.15 2.01 6.70 -39.15 -0.26 1.75 16 25 O -0.31 -4.00 9.92 -34.33 -0.34 -4.34 16 26 C 0.05 0.50 5.46 37.16 0.20 0.70 16 27 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.47 7.66 -51.92 -0.40 0.07 16 32 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 33 H 0.13 1.26 6.29 -52.49 -0.33 0.93 16 34 H 0.13 1.51 6.72 -52.48 -0.35 1.16 16 35 H 0.40 4.81 8.23 -40.82 -0.34 4.48 16 36 H 0.07 0.94 7.94 -51.93 -0.41 0.52 16 37 H 0.08 1.03 7.96 -51.93 -0.41 0.61 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.13 1.42 6.30 -52.49 -0.33 1.09 16 42 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16 43 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -31.10 388.49 -7.77 -38.87 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.10 Total: 0.89 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -2.01 Total: -9.59 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 1.19 Total: -43.08 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.68 Total: -8.74 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.10 -7.77 -38.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732917711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.344 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds