Wall clock time and date at job start Tue Mar 31 2020 12:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20755 * 119.99948 * 2 1 4 4 C 1.50699 * 119.99801 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47130 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47258 * 180.02562 * 5 4 2 7 7 C 1.52989 * 109.47336 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47436 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47358 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47021 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00316 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99659 * 179.97438 * 10 9 8 13 13 C 1.39475 * 120.00058 * 184.87146 * 12 10 9 14 14 C 1.38589 * 119.58120 * 182.94614 * 13 12 10 15 15 C 1.40813 * 118.79406 * 179.70006 * 14 13 12 16 16 C 1.41550 * 120.99641 * 180.25456 * 15 14 13 17 17 H 1.07999 * 120.00002 * 154.03193 * 16 15 14 18 18 C 1.40029 * 119.99998 * 334.03763 * 16 15 14 19 19 N 1.30736 * 120.00307 * 163.02668 * 18 16 15 20 20 Si 1.86806 * 119.99947 * 343.02242 * 18 16 15 21 21 H 1.48496 * 109.47082 * 95.20761 * 20 18 16 22 22 H 1.48502 * 109.47287 * 215.21056 * 20 18 16 23 23 H 1.48504 * 109.46767 * 335.20605 * 20 18 16 24 24 C 1.41170 * 118.00675 * 0.28053 * 15 14 13 25 25 C 1.37586 * 119.01672 * 359.97438 * 24 15 14 26 26 N 1.32082 * 121.10984 * 0.02844 * 25 24 15 27 27 H 1.08998 * 109.47072 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46780 * 299.99125 * 1 2 3 29 29 H 1.09004 * 109.47209 * 59.99153 * 1 2 3 30 30 H 1.09004 * 109.47361 * 59.99626 * 4 2 1 31 31 H 1.08998 * 109.47144 * 299.99740 * 4 2 1 32 32 H 1.08999 * 109.47086 * 60.00236 * 5 4 2 33 33 H 1.08998 * 109.47257 * 300.00115 * 5 4 2 34 34 H 1.08993 * 109.47092 * 59.99679 * 6 5 4 35 35 H 1.09007 * 109.46917 * 300.00069 * 6 5 4 36 36 H 1.09004 * 109.47133 * 59.99595 * 7 6 5 37 37 H 1.08998 * 109.46988 * 299.99944 * 7 6 5 38 38 H 1.09004 * 109.47232 * 59.99727 * 8 7 6 39 39 H 1.08998 * 109.47045 * 299.99982 * 8 7 6 40 40 H 1.09004 * 109.46942 * 59.99831 * 9 8 7 41 41 H 1.08998 * 109.47257 * 300.00133 * 9 8 7 42 42 H 0.96997 * 120.00311 * 4.87422 * 12 10 9 43 43 H 1.07995 * 120.60528 * 359.97438 * 14 13 12 44 44 H 0.96999 * 120.00271 * 180.02562 * 19 18 16 45 45 H 1.08002 * 120.48938 * 179.97438 * 24 15 14 46 46 H 1.07999 * 119.44565 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0256 -0.0011 6 6 4.5298 -2.3507 -0.0023 7 6 6.0339 -2.0712 -0.0022 8 6 6.7989 -3.3961 -0.0028 9 6 8.3032 -3.1166 -0.0033 10 6 9.0566 -4.4218 -0.0033 11 8 8.4502 -5.4720 -0.0033 12 7 10.4044 -4.4217 -0.0042 13 6 11.1017 -5.6253 -0.1067 14 6 12.4862 -5.6212 -0.0452 15 6 13.1731 -6.8464 -0.1441 16 6 14.5864 -6.8969 -0.0816 17 1 15.0801 -7.7955 0.2578 18 6 15.3442 -5.7818 -0.4597 19 7 16.5983 -5.6917 -0.1014 20 14 14.5633 -4.4229 -1.4762 21 1 14.0850 -3.3435 -0.5754 22 1 15.5681 -3.8710 -2.4201 23 1 13.4160 -4.9741 -2.2411 24 6 12.4102 -8.0228 -0.3079 25 6 11.0388 -7.9266 -0.3635 26 7 10.4323 -6.7572 -0.2668 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.9971 -1.8764 -0.8908 31 1 1.9972 -1.8771 0.8891 32 1 4.0285 -0.4543 0.8889 33 1 4.0278 -0.4538 -0.8910 34 1 4.2660 -2.9216 -0.8925 35 1 4.2668 -2.9228 0.8874 36 1 6.2974 -1.5003 0.8882 37 1 6.2972 -1.4988 -0.8917 38 1 6.5355 -3.9674 -0.8931 39 1 6.5356 -3.9681 0.8869 40 1 8.5668 -2.5452 0.8867 41 1 8.5662 -2.5448 -0.8932 42 1 10.8894 -3.5848 0.0665 43 1 13.0282 -4.6957 0.0808 44 1 17.1231 -4.9190 -0.3630 45 1 12.8958 -8.9842 -0.3885 46 1 10.4483 -8.8222 -0.4883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764685321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:16 Heat of formation + Delta-G solvation = -90.837859 kcal Electronic energy + Delta-G solvation = -24750.847520 eV Core-core repulsion = 21024.562863 eV Total energy + Delta-G solvation = -3726.284656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38856 -40.46444 -39.77528 -37.15818 -36.14634 -35.53817 -34.34052 -33.22664 -31.83658 -30.85891 -29.56227 -27.93843 -26.29693 -24.22928 -23.64637 -22.26039 -21.83142 -21.17385 -20.37585 -19.55009 -18.57625 -17.58388 -17.28528 -17.20347 -16.69161 -16.63272 -16.39801 -15.94599 -15.86054 -15.82545 -15.26091 -14.96356 -14.78832 -14.70385 -14.29894 -14.00241 -13.57131 -13.51245 -13.37268 -13.07913 -12.94364 -12.78453 -12.67159 -12.61792 -12.41935 -12.28716 -11.83712 -11.80693 -11.79624 -11.63983 -11.54398 -11.32692 -11.27052 -10.94583 -10.50043 -10.17027 -9.66927 -9.01823 -8.97791 -6.74843 0.53786 0.75523 1.05302 1.21748 1.38121 1.47094 1.84093 2.07959 2.08740 2.65798 3.17887 3.53001 3.59379 3.84935 4.01448 4.03687 4.05928 4.20100 4.28920 4.37196 4.49346 4.50641 4.57718 4.62493 4.65777 4.67564 4.73778 4.76907 4.79794 4.85692 4.88505 4.99543 5.07165 5.10293 5.14111 5.19570 5.24213 5.29147 5.39351 5.49105 5.52397 5.56889 5.68183 6.02222 6.18337 6.48555 6.52424 6.62489 6.66248 7.25347 7.69720 8.05771 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028115 B = 0.001825 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.676389 B =15335.836679 C =16162.065507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.352 3.648 3 O -0.512 6.512 4 C -0.174 4.174 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.114 4.114 8 C -0.098 4.098 9 C -0.129 4.129 10 C 0.493 3.507 11 O -0.523 6.523 12 N -0.661 5.661 13 C 0.365 3.635 14 C -0.332 4.332 15 C 0.111 3.889 16 C -0.467 4.467 17 H 0.066 0.934 18 C 0.052 3.948 19 N -0.828 5.828 20 Si 0.970 3.030 21 H -0.243 1.243 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.287 4.287 25 C 0.129 3.871 26 N -0.576 5.576 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.425 0.575 43 H 0.117 0.883 44 H 0.300 0.700 45 H 0.120 0.880 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.491 12.979 -0.846 28.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.232 3.768 3 O -0.390 6.390 4 C -0.211 4.211 5 C -0.148 4.148 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.136 4.136 9 C -0.169 4.169 10 C 0.281 3.719 11 O -0.396 6.396 12 N -0.309 5.309 13 C 0.136 3.864 14 C -0.357 4.357 15 C 0.103 3.897 16 C -0.497 4.497 17 H 0.084 0.916 18 C -0.166 4.166 19 N -0.453 5.453 20 Si 0.793 3.207 21 H -0.168 1.168 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.311 4.311 25 C -0.023 4.023 26 N -0.296 5.296 27 H 0.126 0.874 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.263 0.737 43 H 0.134 0.866 44 H 0.111 0.889 45 H 0.138 0.862 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -26.334 12.925 -0.860 29.348 hybrid contribution 1.753 0.326 -0.130 1.788 sum -24.581 13.251 -0.990 27.943 Atomic orbital electron populations 1.22313 0.92258 1.06446 1.04986 1.25312 0.93436 0.90173 0.67875 1.90412 1.73148 1.37030 1.38432 1.22279 0.95297 0.96929 1.06568 1.21372 0.94160 0.97311 1.01967 1.21563 0.94334 0.96841 1.02652 1.21559 0.94783 0.95995 1.02814 1.21284 0.92068 0.98004 1.02293 1.21796 0.95700 0.92628 1.06750 1.21895 0.81478 0.93250 0.75250 1.90752 1.67698 1.35260 1.45880 1.43741 1.07551 1.07367 1.72229 1.18317 0.87754 0.86907 0.93373 1.21260 0.92465 0.99030 1.22985 1.17887 0.93458 0.91734 0.86612 1.19529 0.90219 1.00450 1.39474 0.91558 1.26899 0.94971 1.00238 0.94511 1.69644 1.09757 1.30651 1.35259 0.85438 0.78413 0.77892 0.78948 1.16823 1.20305 1.18612 1.22061 0.94932 0.98798 1.15286 1.22371 0.91861 0.94652 0.93463 1.67462 1.39681 0.97697 1.24765 0.87438 0.88773 0.88786 0.86355 0.86324 0.92725 0.92772 0.91527 0.91472 0.91188 0.91288 0.92718 0.92573 0.86249 0.86476 0.73735 0.86594 0.88937 0.86207 0.82341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.04 10.33 71.24 0.74 -0.30 16 2 C 0.35 4.25 7.27 29.10 0.21 4.46 16 3 O -0.51 -11.16 16.72 -1.43 -0.02 -11.18 16 4 C -0.17 -1.44 5.55 29.85 0.17 -1.27 16 5 C -0.11 -1.45 4.51 30.60 0.14 -1.31 16 6 C -0.12 -1.49 5.21 30.59 0.16 -1.33 16 7 C -0.11 -1.64 5.21 30.59 0.16 -1.48 16 8 C -0.10 -1.95 4.50 30.59 0.14 -1.82 16 9 C -0.13 -2.56 5.70 29.85 0.17 -2.39 16 10 C 0.49 16.20 7.78 87.66 0.68 16.88 16 11 O -0.52 -22.11 14.25 -3.02 -0.04 -22.16 16 12 N -0.66 -23.01 5.39 -308.66 -1.66 -24.67 16 13 C 0.37 16.45 7.41 132.75 0.98 17.44 16 14 C -0.33 -15.63 7.01 22.98 0.16 -15.47 16 15 C 0.11 5.69 5.23 -21.11 -0.11 5.58 16 16 C -0.47 -25.31 9.66 23.52 0.23 -25.08 16 17 H 0.07 3.84 8.06 -2.91 -0.02 3.81 16 18 C 0.05 2.64 5.45 85.29 0.47 3.11 16 19 N -0.83 -42.72 13.92 21.84 0.30 -42.41 16 20 Si 0.97 40.12 24.42 68.60 1.68 41.79 16 21 H -0.24 -8.93 6.70 99.48 0.67 -8.26 16 22 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.26 -11.55 6.66 99.48 0.66 -10.89 16 24 C -0.29 -13.58 9.90 22.84 0.23 -13.36 16 25 C 0.13 5.78 11.15 84.50 0.94 6.72 16 26 N -0.58 -27.62 7.87 -193.54 -1.52 -29.14 16 27 H 0.11 0.00 8.00 -2.39 -0.02 -0.02 16 28 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.84 8.10 -2.39 -0.02 0.83 16 33 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 1.26 8.10 -2.38 -0.02 1.24 16 39 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 40 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.42 11.28 8.69 -92.71 -0.81 10.47 16 43 H 0.12 5.10 4.23 -2.91 -0.01 5.09 16 44 H 0.30 13.69 8.29 -92.71 -0.77 12.93 16 45 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 46 H 0.16 6.00 8.06 -2.91 -0.02 5.97 16 Total: -1.00 -74.31 382.12 4.27 -70.04 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.09 Total: 27.37 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 5.46 Total: -9.63 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -2.88 Total: -96.23 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.07 Total: -33.34 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.68 Total: 41.79 kcal Total: -74.31 4.27 -70.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764685321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.799 kcal (2) G-P(sol) polarization free energy of solvation -74.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds