Wall clock time and date at job start Tue Mar 31 2020 12:58:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46907 * 1
3 3 C 1.46768 * 111.00260 * 2 1
4 4 C 1.53024 * 107.55643 * 172.10533 * 3 2 1
5 5 O 1.41200 * 110.13859 * 60.33414 * 4 3 2
6 6 C 1.39382 * 122.17162 * 328.36074 * 5 4 3
7 7 H 1.09002 * 106.95186 * 125.17563 * 6 5 4
8 8 C 1.54710 * 110.79514 * 241.40707 * 6 5 4
9 9 N 1.48878 * 103.95142 * 105.30686 * 8 6 5
10 10 C 1.46902 * 111.00258 * 159.90840 * 9 8 6
11 11 C 1.50697 * 109.47218 * 69.86974 * 10 9 8
12 12 C 1.38306 * 119.92775 * 90.00152 * 11 10 9
13 13 C 1.38103 * 120.06789 * 179.97438 * 12 11 10
14 14 C 1.38880 * 119.92898 * 0.02562 * 13 12 11
15 15 O 1.35750 * 120.06482 * 180.02562 * 14 13 12
16 16 C 1.34833 * 117.00300 * 5.53566 * 15 14 13
17 17 H 1.07997 * 119.99571 * 354.93885 * 16 15 14
18 18 C 1.38652 * 120.00010 * 174.66892 * 16 15 14
19 19 N 1.31559 * 120.00071 * 359.97438 * 18 16 15
20 20 Si 1.86803 * 119.99847 * 179.97438 * 18 16 15
21 21 H 1.48494 * 109.47036 * 0.02562 * 20 18 16
22 22 H 1.48505 * 109.46700 * 119.99832 * 20 18 16
23 23 H 1.48497 * 109.46963 * 239.99809 * 20 18 16
24 24 C 1.38879 * 119.86441 * 0.27433 * 14 13 12
25 25 C 1.38104 * 119.92643 * 359.45157 * 24 14 13
26 26 C 1.48884 * 103.57681 * 40.72725 * 9 8 6
27 27 C 1.45241 * 110.99842 * 234.27209 * 2 1 3
28 28 H 1.09000 * 108.41526 * 37.55530 * 27 2 1
29 29 H 1.08995 * 109.47181 * 185.73185 * 1 2 3
30 30 H 1.09000 * 109.47039 * 305.73075 * 1 2 3
31 31 H 1.08999 * 109.46885 * 65.72845 * 1 2 3
32 32 H 1.09003 * 109.83809 * 291.61885 * 3 2 1
33 33 H 1.09004 * 109.83972 * 52.58937 * 3 2 1
34 34 H 1.08997 * 109.36097 * 180.54644 * 4 3 2
35 35 H 1.09001 * 109.35592 * 300.27480 * 4 3 2
36 36 H 1.09001 * 110.53265 * 346.68626 * 8 6 5
37 37 H 1.09003 * 110.52873 * 223.92723 * 8 6 5
38 38 H 1.09002 * 109.46729 * 309.87423 * 10 9 8
39 39 H 1.08995 * 109.47463 * 189.87511 * 10 9 8
40 40 H 1.07997 * 119.96766 * 359.97438 * 12 11 10
41 41 H 1.07994 * 120.03267 * 180.02562 * 13 12 11
42 42 H 0.97000 * 120.00090 * 180.02562 * 19 18 16
43 43 H 1.07995 * 120.03419 * 179.72744 * 24 14 13
44 44 H 1.08001 * 119.96100 * 180.27490 * 25 24 14
45 45 H 1.09000 * 110.54681 * 77.63743 * 26 9 8
46 46 H 1.09006 * 110.54634 * 200.44171 * 26 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9951 1.3702 0.0000
4 6 3.5097 1.2831 0.2004
5 8 4.0973 0.5445 -0.8498
6 6 3.4276 -0.4967 -1.4901
7 1 3.4343 -0.2707 -2.5564
8 6 4.1862 -1.8326 -1.3070
9 7 3.3721 -2.5732 -0.3045
10 6 3.6562 -4.0136 -0.3560
11 6 5.0445 -4.2709 0.1708
12 6 5.2367 -4.5158 1.5184
13 6 6.5076 -4.7525 2.0042
14 6 7.5932 -4.7439 1.1381
15 8 8.8436 -4.9767 1.6126
16 6 8.9510 -5.3225 2.9114
17 1 8.0756 -5.3238 3.5440
18 6 10.1842 -5.6818 3.4335
19 7 11.2494 -5.6858 2.6615
20 14 10.3330 -6.1601 5.2331
21 1 8.9989 -6.0755 5.8797
22 1 10.8447 -7.5505 5.3349
23 1 11.2737 -5.2353 5.9149
24 6 7.3977 -4.4915 -0.2135
25 6 6.1236 -4.2611 -0.6940
26 6 1.9694 -2.2912 -0.7163
27 6 1.9895 -0.7918 -1.1008
28 1 1.3475 -0.6393 -1.9683
29 1 -0.3633 -1.0225 0.1026
30 1 -0.3633 0.6001 0.8342
31 1 -0.3633 0.4224 -0.9368
32 1 1.7750 1.8509 -0.9532
33 1 1.5462 1.9388 0.8144
34 1 3.9306 2.2884 0.2148
35 1 3.7208 0.7893 1.1489
36 1 5.1912 -1.6523 -0.9254
37 1 4.2263 -2.3814 -2.2479
38 1 3.5889 -4.3605 -1.3872
39 1 2.9304 -4.5493 0.2557
40 1 4.3921 -4.5220 2.1914
41 1 6.6570 -4.9441 3.0565
42 1 12.1121 -5.9375 3.0267
43 1 8.2404 -4.4798 -0.8887
44 1 5.9703 -4.0692 -1.7457
45 1 1.6924 -2.9026 -1.5750
46 1 1.2848 -2.4638 0.1143
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000769945029.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:58:59
Heat of formation + Delta-G solvation = -11.862415 kcal
Electronic energy + Delta-G solvation = -26832.782407 eV
Core-core repulsion = 23109.922383 eV
Total energy + Delta-G solvation = -3722.860024 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.69593 -39.00733 -37.50996 -36.36789 -35.99603 -32.49689 -31.87651 -30.12487
-29.74142 -28.68053 -28.25571 -25.84313 -25.03489 -23.81090 -23.33964 -21.91765
-21.22908 -20.21402 -19.32295 -17.91885 -17.35146 -17.03564 -16.75186 -16.01840
-15.53840 -15.09774 -14.79832 -14.51124 -14.45149 -14.23327 -14.07178 -13.54250
-13.48733 -13.34451 -13.01884 -12.83302 -12.63917 -12.48106 -12.45516 -12.17758
-12.01096 -11.65387 -11.48716 -11.32529 -11.28419 -11.15535 -10.71977 -10.59174
-10.49263 -10.44646 -10.37207 -9.47202 -9.25980 -8.79084 -8.60150 -8.37213
-8.08557 -7.10268 -6.40254 -3.98674 2.29508 2.36632 3.15665 3.17299
3.22982 3.26068 3.68064 4.01058 4.06522 4.27304 4.36513 4.67787
4.70503 4.82807 4.92736 5.00316 5.06690 5.15321 5.17007 5.21291
5.24443 5.31021 5.35817 5.41375 5.46174 5.48924 5.55306 5.68892
5.73761 5.79342 5.85208 5.86142 5.95499 6.08437 6.28220 6.48886
6.62369 6.71267 6.77170 6.88382 7.00957 7.07276 7.16570 7.32384
7.48916 7.51579 7.58547 7.90317 8.05554 9.05851 9.76988 10.78096
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.020695 B = 0.002699 C = 0.002642
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1352.688657 B =10371.328688 C =10595.724855
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 N -0.532 5.532
3 C 0.020 3.980
4 C 0.081 3.919
5 O -0.378 6.378
6 C 0.114 3.886
7 H 0.069 0.931
8 C 0.017 3.983
9 N -0.490 5.490
10 C 0.101 3.899
11 C -0.177 4.177
12 C -0.049 4.049
13 C -0.235 4.235
14 C 0.156 3.844
15 O -0.180 6.180
16 C -0.389 4.389
17 H 0.092 0.908
18 C 0.038 3.962
19 N -0.864 5.864
20 Si 0.940 3.060
21 H -0.267 1.267
22 H -0.276 1.276
23 H -0.276 1.276
24 C -0.193 4.193
25 C -0.067 4.067
26 C 0.039 3.961
27 C 0.064 3.936
28 H 0.049 0.951
29 H 0.071 0.929
30 H 0.071 0.929
31 H 0.024 0.976
32 H 0.040 0.960
33 H 0.090 0.910
34 H 0.090 0.910
35 H 0.065 0.935
36 H 0.099 0.901
37 H 0.052 0.948
38 H 0.034 0.966
39 H 0.074 0.926
40 H 0.106 0.894
41 H 0.126 0.874
42 H 0.269 0.731
43 H 0.115 0.885
44 H 0.105 0.895
45 H 0.044 0.956
46 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.228 10.836 -7.474 24.978
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 N -0.257 5.257
3 C -0.108 4.108
4 C 0.005 3.995
5 O -0.296 6.296
6 C 0.055 3.945
7 H 0.086 0.914
8 C -0.111 4.111
9 N -0.214 5.214
10 C -0.026 4.026
11 C -0.178 4.178
12 C -0.068 4.068
13 C -0.254 4.254
14 C 0.102 3.898
15 O -0.083 6.083
16 C -0.466 4.466
17 H 0.110 0.890
18 C -0.166 4.166
19 N -0.499 5.499
20 Si 0.765 3.235
21 H -0.191 1.191
22 H -0.202 1.202
23 H -0.202 1.202
24 C -0.212 4.212
25 C -0.086 4.086
26 C -0.090 4.090
27 C -0.046 4.046
28 H 0.067 0.933
29 H 0.090 0.910
30 H 0.090 0.910
31 H 0.043 0.957
32 H 0.058 0.942
33 H 0.109 0.891
34 H 0.108 0.892
35 H 0.083 0.917
36 H 0.118 0.882
37 H 0.070 0.930
38 H 0.052 0.948
39 H 0.092 0.908
40 H 0.124 0.876
41 H 0.143 0.857
42 H 0.079 0.921
43 H 0.133 0.867
44 H 0.123 0.877
45 H 0.063 0.937
46 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -20.321 10.771 -6.638 23.938
hybrid contribution -0.704 -0.272 -0.522 0.918
sum -21.026 10.499 -7.160 24.568
Atomic orbital electron populations
1.22428 0.86415 1.02651 1.00398 1.60900 1.07760 1.12538 1.44487
1.22720 0.97244 0.89491 1.01339 1.22368 0.90806 0.95623 0.90730
1.86204 1.45535 1.46660 1.51251 1.21671 0.89887 0.88029 0.94904
0.91359 1.23889 1.00077 0.92757 0.94373 1.65914 1.01857 1.08676
1.44920 1.20968 0.95228 0.87777 0.98597 1.19004 0.93449 1.11255
0.94095 1.20548 0.95888 0.96248 0.94094 1.21152 0.92549 1.11177
1.00513 1.19388 0.85638 0.92293 0.92446 1.83976 1.21679 1.74612
1.28049 1.21378 0.95993 1.46243 0.82971 0.89029 1.25284 0.94351
0.96702 1.00242 1.70052 0.99364 1.44759 1.35773 0.85655 0.78853
0.78392 0.80581 1.19081 1.20204 1.20167 1.20152 0.96991 1.10886
0.93220 1.20449 0.91756 0.98584 0.97823 1.23398 0.92962 0.93047
0.99595 1.22153 0.95442 0.95026 0.91949 0.93307 0.91038 0.91010
0.95735 0.94214 0.89143 0.89216 0.91728 0.88250 0.93029 0.94826
0.90792 0.87581 0.85660 0.92142 0.86689 0.87666 0.93749 0.89233
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.21 9.32 60.07 0.56 0.77 16
2 N -0.53 -5.27 4.44 -235.82 -1.05 -6.32 16
3 C 0.02 0.18 5.66 -3.88 -0.02 0.15 16
4 C 0.08 0.87 7.29 37.17 0.27 1.14 16
5 O -0.38 -5.02 9.93 -30.91 -0.31 -5.33 16
6 C 0.11 1.35 3.68 -26.40 -0.10 1.26 16
7 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16
8 C 0.02 0.23 5.28 -1.83 -0.01 0.22 16
9 N -0.49 -6.69 5.40 -230.35 -1.24 -7.93 16
10 C 0.10 1.42 4.98 -4.98 -0.02 1.39 16
11 C -0.18 -3.10 5.10 -104.58 -0.53 -3.64 16
12 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16
13 C -0.23 -5.27 9.17 -39.39 -0.36 -5.64 16
14 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16
15 O -0.18 -5.24 9.76 0.04 0.00 -5.24 16
16 C -0.39 -11.11 9.49 30.89 0.29 -10.81 16
17 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16
18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16
19 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16
20 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16
21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16
22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16
23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16
24 C -0.19 -4.19 9.99 -39.39 -0.39 -4.58 16
25 C -0.07 -1.23 8.70 -39.61 -0.34 -1.57 16
26 C 0.04 0.41 6.01 -1.77 -0.01 0.40 16
27 C 0.06 0.66 2.73 -68.23 -0.19 0.47 16
28 H 0.05 0.44 7.74 -51.93 -0.40 0.04 16
29 H 0.07 0.49 7.37 -51.93 -0.38 0.11 16
30 H 0.07 0.45 8.06 -51.93 -0.42 0.04 16
31 H 0.02 0.16 8.02 -51.93 -0.42 -0.26 16
32 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16
33 H 0.09 0.65 8.05 -51.93 -0.42 0.23 16
34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16
35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
36 H 0.10 1.59 7.67 -51.93 -0.40 1.19 16
37 H 0.05 0.61 7.85 -51.93 -0.41 0.20 16
38 H 0.03 0.43 7.84 -51.93 -0.41 0.02 16
39 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16
40 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16
41 H 0.13 2.83 5.64 -52.49 -0.30 2.54 16
42 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16
43 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16
44 H 0.11 1.62 8.05 -52.49 -0.42 1.20 16
45 H 0.04 0.42 8.02 -51.93 -0.42 0.00 16
46 H 0.09 0.97 7.28 -51.93 -0.38 0.59 16
LS Contribution 365.17 15.07 5.50 5.50
Total: -1.00 -32.12 365.17 -10.09 -42.20
By element:
Atomic # 1 Polarization: 10.55 SS G_CDS: -7.13 Total: 3.42 kcal
Atomic # 6 Polarization: -15.58 SS G_CDS: -1.60 Total: -17.18 kcal
Atomic # 7 Polarization: -37.72 SS G_CDS: -1.53 Total: -39.25 kcal
Atomic # 8 Polarization: -10.27 SS G_CDS: -0.31 Total: -10.57 kcal
Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -32.12 -10.09 -42.20 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000769945029.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.339 kcal
(2) G-P(sol) polarization free energy of solvation -32.115 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.777 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.862 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds