Wall clock time and date at job start Tue Mar 31 2020 12:58:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46907 * 1
3 3 C 1.46768 * 111.00260 * 2 1
4 4 C 1.53024 * 107.55643 * 172.10533 * 3 2 1
5 5 O 1.41200 * 110.13859 * 60.33414 * 4 3 2
6 6 C 1.39382 * 122.17162 * 328.36074 * 5 4 3
7 7 H 1.09002 * 106.95186 * 125.17563 * 6 5 4
8 8 C 1.54710 * 110.79514 * 241.40707 * 6 5 4
9 9 N 1.48878 * 103.95142 * 105.30686 * 8 6 5
10 10 C 1.46902 * 111.00258 * 159.90840 * 9 8 6
11 11 C 1.50697 * 109.47218 * 69.86974 * 10 9 8
12 12 C 1.38306 * 119.92775 * 90.00152 * 11 10 9
13 13 C 1.38103 * 120.06789 * 179.97438 * 12 11 10
14 14 C 1.38880 * 119.92898 * 0.02562 * 13 12 11
15 15 O 1.35750 * 120.06482 * 180.02562 * 14 13 12
16 16 C 1.34833 * 117.00300 * 5.53566 * 15 14 13
17 17 H 1.07997 * 119.99571 * 354.93885 * 16 15 14
18 18 C 1.38652 * 120.00010 * 174.66892 * 16 15 14
19 19 N 1.31559 * 120.00071 * 359.97438 * 18 16 15
20 20 Si 1.86803 * 119.99847 * 179.97438 * 18 16 15
21 21 H 1.48494 * 109.47036 * 0.02562 * 20 18 16
22 22 H 1.48505 * 109.46700 * 119.99832 * 20 18 16
23 23 H 1.48497 * 109.46963 * 239.99809 * 20 18 16
24 24 C 1.38879 * 119.86441 * 0.27433 * 14 13 12
25 25 C 1.38104 * 119.92643 * 359.45157 * 24 14 13
26 26 C 1.48884 * 103.57681 * 40.72725 * 9 8 6
27 27 C 1.45241 * 110.99842 * 234.27209 * 2 1 3
28 28 H 1.09000 * 108.41526 * 37.55530 * 27 2 1
29 29 H 1.08995 * 109.47181 * 185.73185 * 1 2 3
30 30 H 1.09000 * 109.47039 * 305.73075 * 1 2 3
31 31 H 1.08999 * 109.46885 * 65.72845 * 1 2 3
32 32 H 1.09003 * 109.83809 * 291.61885 * 3 2 1
33 33 H 1.09004 * 109.83972 * 52.58937 * 3 2 1
34 34 H 1.08997 * 109.36097 * 180.54644 * 4 3 2
35 35 H 1.09001 * 109.35592 * 300.27480 * 4 3 2
36 36 H 1.09001 * 110.53265 * 346.68626 * 8 6 5
37 37 H 1.09003 * 110.52873 * 223.92723 * 8 6 5
38 38 H 1.09002 * 109.46729 * 309.87423 * 10 9 8
39 39 H 1.08995 * 109.47463 * 189.87511 * 10 9 8
40 40 H 1.07997 * 119.96766 * 359.97438 * 12 11 10
41 41 H 1.07994 * 120.03267 * 180.02562 * 13 12 11
42 42 H 0.97000 * 120.00090 * 180.02562 * 19 18 16
43 43 H 1.07995 * 120.03419 * 179.72744 * 24 14 13
44 44 H 1.08001 * 119.96100 * 180.27490 * 25 24 14
45 45 H 1.09000 * 110.54681 * 77.63743 * 26 9 8
46 46 H 1.09006 * 110.54634 * 200.44171 * 26 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9951 1.3702 0.0000
4 6 3.5097 1.2831 0.2004
5 8 4.0973 0.5445 -0.8498
6 6 3.4276 -0.4967 -1.4901
7 1 3.4343 -0.2707 -2.5564
8 6 4.1862 -1.8326 -1.3070
9 7 3.3721 -2.5732 -0.3045
10 6 3.6562 -4.0136 -0.3560
11 6 5.0445 -4.2709 0.1708
12 6 5.2367 -4.5158 1.5184
13 6 6.5076 -4.7525 2.0042
14 6 7.5932 -4.7439 1.1381
15 8 8.8436 -4.9767 1.6126
16 6 8.9510 -5.3225 2.9114
17 1 8.0756 -5.3238 3.5440
18 6 10.1842 -5.6818 3.4335
19 7 11.2494 -5.6858 2.6615
20 14 10.3330 -6.1601 5.2331
21 1 8.9989 -6.0755 5.8797
22 1 10.8447 -7.5505 5.3349
23 1 11.2737 -5.2353 5.9149
24 6 7.3977 -4.4915 -0.2135
25 6 6.1236 -4.2611 -0.6940
26 6 1.9694 -2.2912 -0.7163
27 6 1.9895 -0.7918 -1.1008
28 1 1.3475 -0.6393 -1.9683
29 1 -0.3633 -1.0225 0.1026
30 1 -0.3633 0.6001 0.8342
31 1 -0.3633 0.4224 -0.9368
32 1 1.7750 1.8509 -0.9532
33 1 1.5462 1.9388 0.8144
34 1 3.9306 2.2884 0.2148
35 1 3.7208 0.7893 1.1489
36 1 5.1912 -1.6523 -0.9254
37 1 4.2263 -2.3814 -2.2479
38 1 3.5889 -4.3605 -1.3872
39 1 2.9304 -4.5493 0.2557
40 1 4.3921 -4.5220 2.1914
41 1 6.6570 -4.9441 3.0565
42 1 12.1121 -5.9375 3.0267
43 1 8.2404 -4.4798 -0.8887
44 1 5.9703 -4.0692 -1.7457
45 1 1.6924 -2.9026 -1.5750
46 1 1.2848 -2.4638 0.1143
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000769945029.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:58:58
Heat of formation + Delta-G solvation = -35.314654 kcal
Electronic energy + Delta-G solvation = -26833.799373 eV
Core-core repulsion = 23109.922383 eV
Total energy + Delta-G solvation = -3723.876989 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.56089 -40.73240 -38.86587 -37.58715 -36.98496 -34.36328 -33.16980 -31.79002
-30.83844 -29.66066 -29.18968 -27.56679 -26.31823 -24.84681 -24.18405 -23.56239
-22.43310 -21.58950 -20.13773 -19.82143 -18.83602 -18.17563 -17.76688 -16.86204
-16.53553 -16.37160 -16.33074 -16.04552 -15.69115 -15.47625 -15.24775 -15.02879
-14.91860 -14.51407 -14.30102 -13.98991 -13.95239 -13.60281 -13.52059 -13.23688
-13.11687 -12.91850 -12.77851 -12.55825 -12.40594 -12.22622 -12.15314 -12.12610
-12.08020 -11.84969 -11.27836 -11.15858 -10.79616 -10.38367 -9.75300 -9.37826
-9.26453 -8.86940 -8.46838 -6.14819 0.62002 0.70077 1.34801 1.43263
1.53509 2.18206 2.51734 2.76775 2.94433 3.07161 3.31889 3.48179
3.54179 3.54516 3.95718 4.02501 4.05270 4.11283 4.20288 4.21553
4.28009 4.35918 4.45098 4.46527 4.59617 4.62119 4.63502 4.64476
4.69113 4.74555 4.81835 4.86231 4.89942 4.99346 5.01671 5.07614
5.10348 5.16826 5.31318 5.57099 5.72607 5.78999 5.91172 6.01285
6.03996 6.08394 6.14843 6.26442 6.72952 6.98087 7.79534 8.76910
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.020695 B = 0.002699 C = 0.002642
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1352.688657 B =10371.328688 C =10595.724855
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 N -0.552 5.552
3 C 0.027 3.973
4 C 0.075 3.925
5 O -0.403 6.403
6 C 0.108 3.892
7 H 0.083 0.917
8 C 0.016 3.984
9 N -0.511 5.511
10 C 0.105 3.895
11 C -0.151 4.151
12 C -0.052 4.052
13 C -0.244 4.244
14 C 0.114 3.886
15 O -0.234 6.234
16 C -0.412 4.412
17 H 0.100 0.900
18 C -0.024 4.024
19 N -0.922 5.922
20 Si 1.019 2.981
21 H -0.252 1.252
22 H -0.267 1.267
23 H -0.268 1.268
24 C -0.205 4.205
25 C -0.058 4.058
26 C 0.044 3.956
27 C 0.067 3.933
28 H 0.068 0.932
29 H 0.075 0.925
30 H 0.079 0.921
31 H 0.034 0.966
32 H 0.047 0.953
33 H 0.107 0.893
34 H 0.107 0.893
35 H 0.039 0.961
36 H 0.063 0.937
37 H 0.070 0.930
38 H 0.057 0.943
39 H 0.090 0.910
40 H 0.134 0.866
41 H 0.116 0.884
42 H 0.273 0.727
43 H 0.111 0.889
44 H 0.142 0.858
45 H 0.066 0.934
46 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.261 11.437 -8.048 28.874
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 N -0.278 5.278
3 C -0.101 4.101
4 C -0.001 4.001
5 O -0.322 6.322
6 C 0.049 3.951
7 H 0.101 0.899
8 C -0.112 4.112
9 N -0.236 5.236
10 C -0.023 4.023
11 C -0.152 4.152
12 C -0.070 4.070
13 C -0.263 4.263
14 C 0.064 3.936
15 O -0.141 6.141
16 C -0.488 4.488
17 H 0.117 0.883
18 C -0.221 4.221
19 N -0.561 5.561
20 Si 0.838 3.162
21 H -0.175 1.175
22 H -0.192 1.192
23 H -0.193 1.193
24 C -0.224 4.224
25 C -0.077 4.077
26 C -0.084 4.084
27 C -0.043 4.043
28 H 0.086 0.914
29 H 0.094 0.906
30 H 0.098 0.902
31 H 0.052 0.948
32 H 0.066 0.934
33 H 0.125 0.875
34 H 0.125 0.875
35 H 0.058 0.942
36 H 0.082 0.918
37 H 0.088 0.912
38 H 0.075 0.925
39 H 0.108 0.892
40 H 0.152 0.848
41 H 0.134 0.866
42 H 0.082 0.918
43 H 0.129 0.871
44 H 0.160 0.840
45 H 0.084 0.916
46 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -24.423 11.392 -7.239 27.905
hybrid contribution 0.266 -0.334 -0.545 0.693
sum -24.158 11.058 -7.784 27.685
Atomic orbital electron populations
1.22464 0.84753 1.03217 1.01260 1.60908 1.09319 1.12942 1.44636
1.22682 0.95546 0.89491 1.02370 1.22486 0.92698 0.95819 0.89058
1.86178 1.46959 1.47244 1.51774 1.21802 0.90659 0.86988 0.95672
0.89901 1.23855 0.98457 0.94127 0.94748 1.65799 1.03838 1.08017
1.45934 1.20980 0.92590 0.88685 1.00013 1.19559 0.95564 1.06847
0.93237 1.20882 0.95186 0.95425 0.95527 1.21236 0.93496 1.11634
0.99938 1.19917 0.85326 0.94269 0.94106 1.83937 1.24072 1.77509
1.28546 1.21853 0.96818 1.46756 0.83422 0.88276 1.26600 0.93548
0.96337 1.05617 1.70194 1.00153 1.47263 1.38445 0.84525 0.79481
0.78302 0.73857 1.17537 1.19189 1.19283 1.20418 0.98710 1.11104
0.92202 1.20832 0.90301 0.96726 0.99814 1.23428 0.90798 0.93717
1.00442 1.22121 0.94600 0.94748 0.92851 0.91402 0.90640 0.90235
0.94762 0.93435 0.87487 0.87542 0.94227 0.91837 0.91244 0.92528
0.89178 0.84830 0.86638 0.91843 0.87053 0.84037 0.91609 0.89124
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.33 9.32 127.69 1.19 1.52 16
2 N -0.55 -9.26 4.44 -899.98 -4.00 -13.26 16
3 C 0.03 0.40 5.66 86.34 0.49 0.89 16
4 C 0.08 1.54 7.29 71.99 0.52 2.06 16
5 O -0.40 -10.28 9.93 -133.50 -1.33 -11.60 16
6 C 0.11 2.29 3.68 30.81 0.11 2.41 16
7 H 0.08 1.49 8.13 -2.39 -0.02 1.47 16
8 C 0.02 0.40 5.28 86.50 0.46 0.85 16
9 N -0.51 -12.30 5.40 -882.69 -4.76 -17.06 16
10 C 0.10 2.49 4.98 85.56 0.43 2.92 16
11 C -0.15 -4.94 5.10 -19.84 -0.10 -5.04 16
12 C -0.05 -1.92 9.69 22.25 0.22 -1.70 16
13 C -0.24 -11.25 9.17 22.39 0.21 -11.05 16
14 C 0.11 5.95 6.65 22.58 0.15 6.10 16
15 O -0.23 -14.62 9.76 -22.77 -0.22 -14.85 16
16 C -0.41 -24.87 9.49 67.92 0.64 -24.22 16
17 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16
18 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16
19 N -0.92 -58.01 13.67 21.61 0.30 -57.72 16
20 Si 1.02 44.12 29.55 68.60 2.03 46.15 16
21 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16
22 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16
23 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16
24 C -0.21 -9.15 9.99 22.39 0.22 -8.92 16
25 C -0.06 -2.04 8.70 22.25 0.19 -1.84 16
26 C 0.04 0.77 6.01 86.53 0.52 1.29 16
27 C 0.07 1.13 2.73 45.47 0.12 1.26 16
28 H 0.07 0.92 7.74 -2.39 -0.02 0.90 16
29 H 0.07 0.77 7.37 -2.39 -0.02 0.75 16
30 H 0.08 0.75 8.06 -2.39 -0.02 0.73 16
31 H 0.03 0.32 8.02 -2.39 -0.02 0.30 16
32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16
33 H 0.11 1.24 8.05 -2.38 -0.02 1.22 16
34 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16
35 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16
36 H 0.06 1.99 7.67 -2.39 -0.02 1.97 16
37 H 0.07 1.39 7.85 -2.39 -0.02 1.37 16
38 H 0.06 1.14 7.84 -2.39 -0.02 1.12 16
39 H 0.09 1.92 8.08 -2.39 -0.02 1.91 16
40 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16
41 H 0.12 5.45 5.64 -2.91 -0.02 5.43 16
42 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16
43 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16
44 H 0.14 3.92 8.05 -2.91 -0.02 3.89 16
45 H 0.07 0.89 8.02 -2.39 -0.02 0.87 16
46 H 0.09 1.58 7.28 -2.38 -0.02 1.57 16
Total: -1.00 -75.44 365.17 -1.18 -76.62
By element:
Atomic # 1 Polarization: 25.17 SS G_CDS: 0.97 Total: 26.14 kcal
Atomic # 6 Polarization: -40.26 SS G_CDS: 5.84 Total: -34.41 kcal
Atomic # 7 Polarization: -79.57 SS G_CDS: -8.46 Total: -88.04 kcal
Atomic # 8 Polarization: -24.90 SS G_CDS: -1.55 Total: -26.45 kcal
Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal
Total: -75.44 -1.18 -76.62 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000769945029.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.305 kcal
(2) G-P(sol) polarization free energy of solvation -75.441 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.137 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.178 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.619 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.315 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds