Wall clock time and date at job start Tue Mar 31 2020 12:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42895 * 114.00163 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47120 * 74.99872 * 4 3 2 6 6 C 1.35906 * 116.99734 * 75.00462 * 5 4 3 7 7 C 1.38731 * 120.05376 * 179.97438 * 6 5 4 8 8 C 1.38147 * 119.93953 * 180.29801 * 7 6 5 9 9 C 1.38267 * 120.05401 * 359.41897 * 8 7 6 10 10 C 1.50705 * 119.94160 * 180.30305 * 9 8 7 11 11 N 1.46899 * 109.46898 * 270.30148 * 10 9 8 12 12 C 1.46898 * 110.99850 * 189.99982 * 11 10 9 13 13 C 1.50699 * 109.47222 * 170.10583 * 12 11 10 14 14 H 1.08006 * 119.99961 * 355.10744 * 13 12 11 15 15 C 1.37882 * 120.00158 * 175.11214 * 13 12 11 16 16 N 1.31511 * 120.00026 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00055 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46992 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47258 * 119.99764 * 17 15 13 20 20 H 1.48495 * 109.47161 * 239.99880 * 17 15 13 21 21 C 1.46898 * 111.00117 * 66.04603 * 11 10 9 22 22 C 1.53005 * 109.47067 * 63.39546 * 21 11 10 23 23 C 1.47200 * 109.47014 * 181.15424 * 22 21 11 24 24 N 9.88899 * 125.97780 * 80.02188 * 3 1 2 25 25 C 1.38263 * 120.11188 * 0.60429 * 9 8 7 26 26 C 1.38142 * 120.05836 * 359.67551 * 25 9 8 27 27 H 1.08999 * 109.47096 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46850 * 299.99728 * 1 2 3 29 29 H 1.08996 * 109.47691 * 59.99496 * 1 2 3 30 30 H 1.09012 * 109.46971 * 240.00517 * 2 1 3 31 31 H 1.08996 * 109.47691 * 120.00504 * 2 1 3 32 32 H 1.09004 * 109.47414 * 315.00423 * 4 3 2 33 33 H 1.08994 * 109.47089 * 195.00078 * 4 3 2 34 34 H 1.08000 * 120.03196 * 0.02562 * 7 6 5 35 35 H 1.08001 * 119.96804 * 179.69956 * 8 7 6 36 36 H 1.09000 * 109.47061 * 30.29967 * 10 9 8 37 37 H 1.09000 * 109.47254 * 150.29878 * 10 9 8 38 38 H 1.09002 * 109.47292 * 290.10622 * 12 11 10 39 39 H 1.08997 * 109.47470 * 50.10538 * 12 11 10 40 40 H 0.97000 * 120.00065 * 179.97438 * 16 15 13 41 41 H 1.09006 * 109.47351 * 183.39308 * 21 11 10 42 42 H 1.09000 * 109.47279 * 303.39116 * 21 11 10 43 43 H 1.08999 * 109.46717 * 301.15358 * 22 21 11 44 44 H 1.09000 * 109.46957 * 61.15569 * 22 21 11 45 45 H 1.08003 * 119.96852 * 179.70212 * 25 9 8 46 46 H 1.07990 * 120.02850 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 8 3.9327 1.1503 -1.3022 6 6 3.7676 2.0926 -2.2675 7 6 4.2313 1.8582 -3.5538 8 6 4.0677 2.8203 -4.5317 9 6 3.4319 4.0110 -4.2322 10 6 3.2487 5.0559 -5.3026 11 7 4.4103 5.9552 -5.3128 12 6 4.1663 7.1204 -6.1733 13 6 5.2652 8.1320 -5.9727 14 1 6.0212 7.9658 -5.2194 15 6 5.3054 9.2697 -6.7506 16 7 4.3851 9.4719 -7.6680 17 14 6.6672 10.5238 -6.5013 18 1 7.5698 10.0652 -5.4149 19 1 7.4415 10.6705 -7.7599 20 1 6.0725 11.8331 -6.1306 21 6 5.6255 5.2408 -5.7260 22 6 5.4629 4.7479 -7.1653 23 6 6.6695 4.0083 -7.5699 24 7 7.6024 3.4349 -7.8816 25 6 2.9693 4.2471 -2.9508 26 6 3.1355 3.2907 -1.9679 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8508 0.7643 0.7258 33 1 3.7148 2.4783 0.2654 34 1 4.7236 0.9263 -3.7895 35 1 4.4328 2.6402 -5.5320 36 1 3.1575 4.5692 -6.2736 37 1 2.3457 5.6310 -5.0982 38 1 4.1492 6.8046 -7.2164 39 1 3.2075 7.5693 -5.9139 40 1 4.4132 10.2724 -8.2150 41 1 6.4807 5.9142 -5.6670 42 1 5.7881 4.3885 -5.0662 43 1 4.5956 4.0908 -7.2284 44 1 5.3209 5.6018 -7.8278 45 1 2.4773 5.1800 -2.7182 46 1 2.7737 3.4755 -0.9674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775961788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:44 Heat of formation + Delta-G solvation = -33.533173 kcal Electronic energy + Delta-G solvation = -26149.956471 eV Core-core repulsion = 22426.156733 eV Total energy + Delta-G solvation = -3723.799739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.36585 -38.83553 -37.60337 -36.53793 -35.72849 -32.72951 -31.73682 -31.19553 -30.74617 -29.90192 -27.17287 -26.20987 -24.93967 -23.56340 -23.07503 -22.46785 -21.18457 -19.70086 -18.48097 -17.47660 -17.26442 -16.80922 -16.33666 -15.54285 -15.49811 -15.24249 -15.12658 -14.47569 -14.40085 -14.01686 -13.86382 -13.76506 -13.56999 -13.37082 -13.21350 -12.71773 -12.49575 -12.27225 -12.08817 -12.01614 -11.98516 -11.67250 -11.49152 -11.40491 -11.31612 -11.12048 -11.01225 -10.72541 -10.64659 -10.57519 -10.26848 -10.19712 -9.89924 -9.28058 -8.80632 -8.50102 -8.02076 -7.35188 -6.09114 -4.10376 1.50399 1.57711 3.08825 3.10147 3.11755 3.28646 3.29677 3.37268 3.41602 3.90785 4.35281 4.40978 4.60878 4.73671 4.78805 4.89840 4.98513 5.02989 5.04476 5.08873 5.22517 5.27599 5.34386 5.40142 5.46667 5.55495 5.57721 5.60315 5.74319 5.78115 5.81989 5.94781 6.13290 6.21459 6.31760 6.38726 6.51755 6.60883 6.63532 6.88686 6.89068 7.17016 7.22394 7.40951 7.73433 7.87218 7.99018 8.06582 8.43300 8.98247 9.54972 11.01126 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.002797 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.767005 B =10007.398207 C =10914.687300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.392 6.392 4 C 0.214 3.786 5 O -0.335 6.335 6 C 0.116 3.884 7 C -0.152 4.152 8 C -0.082 4.082 9 C -0.095 4.095 10 C 0.085 3.915 11 N -0.521 5.521 12 C 0.185 3.815 13 C -0.508 4.508 14 H 0.065 0.935 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.070 3.930 22 C -0.075 4.075 23 C 0.224 3.776 24 N -0.461 5.461 25 C -0.061 4.061 26 C -0.194 4.194 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.005 0.995 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 -17.154 13.254 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.312 6.312 4 C 0.101 3.899 5 O -0.252 6.252 6 C 0.072 3.928 7 C -0.170 4.170 8 C -0.100 4.100 9 C -0.096 4.096 10 C -0.042 4.042 11 N -0.244 5.244 12 C 0.060 3.940 13 C -0.546 4.546 14 H 0.083 0.917 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.210 1.210 21 C -0.060 4.060 22 C -0.117 4.117 23 C -0.094 4.094 24 N -0.140 5.140 25 C -0.080 4.080 26 C -0.212 4.212 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.023 0.977 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.752 -17.706 13.129 22.781 hybrid contribution 0.279 0.690 -0.535 0.917 sum -5.473 -17.016 12.595 21.866 Atomic orbital electron populations 1.21751 0.93594 1.02302 1.03257 1.22537 0.95728 0.83298 1.00476 1.88074 1.21801 1.27708 1.93655 1.24100 0.80231 1.02711 0.82901 1.86190 1.75577 1.43219 1.20182 1.18870 0.97036 0.88198 0.88694 1.20333 1.05124 1.00947 0.90631 1.20869 0.97600 0.92851 0.98691 1.19858 0.99291 0.94923 0.95481 1.21091 0.95733 0.92804 0.94594 1.62415 1.00640 1.07110 1.54197 1.19890 0.97879 0.86183 0.90008 1.21171 1.11002 1.03930 1.18542 0.91706 1.24952 0.96148 0.98147 0.95147 1.69945 1.34093 1.27554 1.22052 0.86506 0.81998 0.81336 0.78011 1.19632 1.21153 1.21039 1.22100 0.96271 0.98249 0.89425 1.20276 0.89099 0.99512 1.02819 1.29402 0.94621 0.92841 0.92505 1.81242 1.11576 1.11077 1.10061 1.20856 0.97368 0.97967 0.91799 1.21226 1.04879 0.94343 1.00793 0.91082 0.91883 0.91655 0.92609 0.93245 0.88145 0.87952 0.85886 0.85866 0.94315 0.90157 0.97719 0.95132 0.92925 0.89093 0.91494 0.88344 0.85857 0.85541 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.44 6.54 37.16 0.24 0.68 16 3 O -0.39 -3.88 9.83 -59.04 -0.58 -4.46 16 4 C 0.21 1.86 6.39 101.05 0.65 2.51 16 5 O -0.34 -3.91 10.19 -43.26 -0.44 -4.36 16 6 C 0.12 1.50 6.63 -39.22 -0.26 1.24 16 7 C -0.15 -1.96 9.99 -39.43 -0.39 -2.35 16 8 C -0.08 -1.06 7.89 -39.60 -0.31 -1.38 16 9 C -0.09 -1.33 4.90 -104.60 -0.51 -1.84 16 10 C 0.09 1.29 4.93 -4.97 -0.02 1.27 16 11 N -0.52 -9.54 4.69 -237.51 -1.11 -10.65 16 12 C 0.18 4.16 4.49 -4.98 -0.02 4.14 16 13 C -0.51 -12.98 8.41 -34.44 -0.29 -13.27 16 14 H 0.06 1.67 7.29 -52.48 -0.38 1.29 16 15 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -24.91 13.29 55.43 0.74 -24.17 16 17 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.07 1.17 4.73 -3.82 -0.02 1.15 16 22 C -0.08 -1.12 4.93 -29.52 -0.15 -1.27 16 23 C 0.22 3.62 15.44 -20.68 -0.32 3.30 16 24 N -0.46 -8.39 18.55 42.25 0.78 -7.61 16 25 C -0.06 -0.84 9.69 -39.61 -0.38 -1.22 16 26 C -0.19 -2.47 8.78 -39.43 -0.35 -2.82 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.47 8.03 -51.92 -0.42 0.06 16 31 H 0.05 0.30 8.11 -51.93 -0.42 -0.12 16 32 H 0.10 0.60 8.01 -51.93 -0.42 0.19 16 33 H 0.10 0.80 6.70 -51.93 -0.35 0.45 16 34 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.12 1.45 7.26 -52.49 -0.38 1.07 16 36 H 0.04 0.54 6.03 -51.93 -0.31 0.22 16 37 H 0.08 1.22 7.88 -51.93 -0.41 0.81 16 38 H 0.01 0.12 6.04 -51.93 -0.31 -0.20 16 39 H 0.03 0.75 7.93 -51.93 -0.41 0.33 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.09 1.71 6.94 -51.93 -0.36 1.35 16 42 H 0.07 1.04 5.90 -51.93 -0.31 0.73 16 43 H 0.10 1.23 5.71 -51.93 -0.30 0.93 16 44 H 0.12 2.07 6.35 -51.93 -0.33 1.74 16 45 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 46 H 0.13 1.44 5.86 -52.49 -0.31 1.14 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -29.88 379.78 -8.43 -38.31 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.66 Total: 0.49 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.85 Total: -9.07 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.41 Total: -42.43 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -1.02 Total: -8.81 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.88 -8.43 -38.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775961788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.781 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds