Wall clock time and date at job start Tue Mar 31 2020 12:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42895 * 114.00163 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47120 * 74.99872 * 4 3 2 6 6 C 1.35906 * 116.99734 * 75.00462 * 5 4 3 7 7 C 1.38731 * 120.05376 * 179.97438 * 6 5 4 8 8 C 1.38147 * 119.93953 * 180.29801 * 7 6 5 9 9 C 1.38267 * 120.05401 * 359.41897 * 8 7 6 10 10 C 1.50705 * 119.94160 * 180.30305 * 9 8 7 11 11 N 1.46899 * 109.46898 * 270.30148 * 10 9 8 12 12 C 1.46898 * 110.99850 * 189.99982 * 11 10 9 13 13 C 1.50699 * 109.47222 * 170.10583 * 12 11 10 14 14 H 1.08006 * 119.99961 * 355.10744 * 13 12 11 15 15 C 1.37882 * 120.00158 * 175.11214 * 13 12 11 16 16 N 1.31511 * 120.00026 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00055 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46992 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47258 * 119.99764 * 17 15 13 20 20 H 1.48495 * 109.47161 * 239.99880 * 17 15 13 21 21 C 1.46898 * 111.00117 * 66.04603 * 11 10 9 22 22 C 1.53005 * 109.47067 * 63.39546 * 21 11 10 23 23 C 1.47200 * 109.47014 * 181.15424 * 22 21 11 24 24 N 9.88899 * 125.97780 * 80.02188 * 3 1 2 25 25 C 1.38263 * 120.11188 * 0.60429 * 9 8 7 26 26 C 1.38142 * 120.05836 * 359.67551 * 25 9 8 27 27 H 1.08999 * 109.47096 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46850 * 299.99728 * 1 2 3 29 29 H 1.08996 * 109.47691 * 59.99496 * 1 2 3 30 30 H 1.09012 * 109.46971 * 240.00517 * 2 1 3 31 31 H 1.08996 * 109.47691 * 120.00504 * 2 1 3 32 32 H 1.09004 * 109.47414 * 315.00423 * 4 3 2 33 33 H 1.08994 * 109.47089 * 195.00078 * 4 3 2 34 34 H 1.08000 * 120.03196 * 0.02562 * 7 6 5 35 35 H 1.08001 * 119.96804 * 179.69956 * 8 7 6 36 36 H 1.09000 * 109.47061 * 30.29967 * 10 9 8 37 37 H 1.09000 * 109.47254 * 150.29878 * 10 9 8 38 38 H 1.09002 * 109.47292 * 290.10622 * 12 11 10 39 39 H 1.08997 * 109.47470 * 50.10538 * 12 11 10 40 40 H 0.97000 * 120.00065 * 179.97438 * 16 15 13 41 41 H 1.09006 * 109.47351 * 183.39308 * 21 11 10 42 42 H 1.09000 * 109.47279 * 303.39116 * 21 11 10 43 43 H 1.08999 * 109.46717 * 301.15358 * 22 21 11 44 44 H 1.09000 * 109.46957 * 61.15569 * 22 21 11 45 45 H 1.08003 * 119.96852 * 179.70212 * 25 9 8 46 46 H 1.07990 * 120.02850 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 8 3.9327 1.1503 -1.3022 6 6 3.7676 2.0926 -2.2675 7 6 4.2313 1.8582 -3.5538 8 6 4.0677 2.8203 -4.5317 9 6 3.4319 4.0110 -4.2322 10 6 3.2487 5.0559 -5.3026 11 7 4.4103 5.9552 -5.3128 12 6 4.1663 7.1204 -6.1733 13 6 5.2652 8.1320 -5.9727 14 1 6.0212 7.9658 -5.2194 15 6 5.3054 9.2697 -6.7506 16 7 4.3851 9.4719 -7.6680 17 14 6.6672 10.5238 -6.5013 18 1 7.5698 10.0652 -5.4149 19 1 7.4415 10.6705 -7.7599 20 1 6.0725 11.8331 -6.1306 21 6 5.6255 5.2408 -5.7260 22 6 5.4629 4.7479 -7.1653 23 6 6.6695 4.0083 -7.5699 24 7 7.6024 3.4349 -7.8816 25 6 2.9693 4.2471 -2.9508 26 6 3.1355 3.2907 -1.9679 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8508 0.7643 0.7258 33 1 3.7148 2.4783 0.2654 34 1 4.7236 0.9263 -3.7895 35 1 4.4328 2.6402 -5.5320 36 1 3.1575 4.5692 -6.2736 37 1 2.3457 5.6310 -5.0982 38 1 4.1492 6.8046 -7.2164 39 1 3.2075 7.5693 -5.9139 40 1 4.4132 10.2724 -8.2150 41 1 6.4807 5.9142 -5.6670 42 1 5.7881 4.3885 -5.0662 43 1 4.5956 4.0908 -7.2284 44 1 5.3209 5.6018 -7.8278 45 1 2.4773 5.1800 -2.7182 46 1 2.7737 3.4755 -0.9674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775961788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:43 Heat of formation + Delta-G solvation = -50.196238 kcal Electronic energy + Delta-G solvation = -26150.679036 eV Core-core repulsion = 22426.156733 eV Total energy + Delta-G solvation = -3724.522303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.27376 -39.91186 -38.65538 -37.55704 -37.05387 -34.66157 -32.58055 -32.12380 -31.76699 -31.29249 -28.70222 -27.18938 -26.10840 -25.13274 -23.74729 -23.48584 -22.38051 -21.06469 -19.33429 -18.85216 -18.19964 -17.96564 -17.65687 -16.90942 -16.52681 -16.25183 -16.22397 -15.88233 -15.58827 -15.25695 -15.03911 -14.80304 -14.65978 -14.45614 -14.27034 -14.20580 -13.51901 -13.41143 -13.29874 -13.12029 -12.98556 -12.93287 -12.78708 -12.67504 -12.54252 -12.46762 -12.25495 -12.11711 -11.98969 -11.80181 -11.62146 -11.42732 -11.15527 -10.94130 -10.51754 -9.81415 -9.08359 -8.80084 -8.11407 -6.17697 0.50027 0.54873 1.43129 1.46998 1.56975 1.76269 1.79548 2.31272 2.45844 2.65117 2.88038 3.06008 3.22868 3.64555 3.93811 3.99658 4.05705 4.08089 4.17557 4.20061 4.25708 4.29967 4.35314 4.46651 4.49159 4.50226 4.62067 4.68021 4.82627 4.85328 4.87666 5.01547 5.03808 5.19520 5.23125 5.25046 5.38248 5.43168 5.44935 5.53474 5.76502 5.82690 5.84808 6.02011 6.17839 6.39508 6.50516 6.60236 6.73081 6.99377 7.51231 8.97979 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.002797 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.767005 B =10007.398207 C =10914.687300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.409 6.409 4 C 0.205 3.795 5 O -0.343 6.343 6 C 0.114 3.886 7 C -0.160 4.160 8 C -0.080 4.080 9 C -0.107 4.107 10 C 0.089 3.911 11 N -0.529 5.529 12 C 0.199 3.801 13 C -0.512 4.512 14 H 0.058 0.942 15 C 0.010 3.990 16 N -0.928 5.928 17 Si 0.949 3.051 18 H -0.268 1.268 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.075 3.925 22 C -0.062 4.062 23 C 0.244 3.756 24 N -0.492 5.492 25 C -0.071 4.071 26 C -0.196 4.196 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.110 0.890 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.056 0.944 37 H 0.075 0.925 38 H -0.001 1.001 39 H 0.007 0.993 40 H 0.261 0.739 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.131 0.869 44 H 0.108 0.892 45 H 0.126 0.874 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 -18.609 14.339 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.330 6.330 4 C 0.093 3.907 5 O -0.259 6.259 6 C 0.069 3.931 7 C -0.179 4.179 8 C -0.099 4.099 9 C -0.107 4.107 10 C -0.038 4.038 11 N -0.252 5.252 12 C 0.073 3.927 13 C -0.551 4.551 14 H 0.076 0.924 15 C -0.188 4.188 16 N -0.569 5.569 17 Si 0.776 3.224 18 H -0.193 1.193 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.055 4.055 22 C -0.104 4.104 23 C -0.073 4.073 24 N -0.171 5.171 25 C -0.090 4.090 26 C -0.215 4.215 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.127 0.873 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.016 0.984 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.148 0.852 44 H 0.126 0.874 45 H 0.144 0.856 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.595 -19.179 14.235 24.531 hybrid contribution 0.184 1.054 -0.755 1.309 sum -5.411 -18.125 13.480 23.227 Atomic orbital electron populations 1.21768 0.93066 1.03335 1.02591 1.22694 0.96250 0.82600 1.01030 1.88056 1.22390 1.28947 1.93614 1.24480 0.79993 1.04186 0.82046 1.86197 1.75681 1.43005 1.21035 1.19041 0.96434 0.88363 0.89223 1.20551 1.05185 1.01448 0.90685 1.21000 0.97071 0.92365 0.99439 1.19744 1.00663 0.95096 0.95219 1.21079 0.94113 0.92581 0.96039 1.62254 1.02374 1.07261 1.53262 1.19543 0.95639 0.87275 0.90236 1.21475 1.11305 1.04560 1.17745 0.92374 1.25633 0.98029 0.99947 0.95191 1.70035 1.35642 1.28180 1.23039 0.85636 0.79704 0.79256 0.77847 1.19255 1.21042 1.20876 1.21993 0.94646 0.98021 0.90851 1.20186 0.89740 0.99371 1.01111 1.29450 0.94192 0.92020 0.91610 1.81268 1.12461 1.12359 1.11023 1.20970 0.97622 0.98327 0.92086 1.21331 1.04814 0.94189 1.01133 0.89249 0.91710 0.93101 0.93510 0.91165 0.85203 0.87280 0.84636 0.84472 0.92586 0.90671 0.98361 0.97459 0.92955 0.91575 0.89771 0.85178 0.87428 0.85558 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.05 0.70 6.54 71.98 0.47 1.17 16 3 O -0.41 -7.44 9.83 -126.21 -1.24 -8.68 16 4 C 0.21 3.16 6.39 113.37 0.72 3.89 16 5 O -0.34 -7.36 10.19 -69.72 -0.71 -8.07 16 6 C 0.11 2.77 6.63 22.51 0.15 2.92 16 7 C -0.16 -3.82 9.99 22.37 0.22 -3.59 16 8 C -0.08 -1.93 7.89 22.25 0.18 -1.75 16 9 C -0.11 -2.84 4.90 -19.85 -0.10 -2.93 16 10 C 0.09 2.60 4.93 85.56 0.42 3.02 16 11 N -0.53 -19.10 4.69 -905.35 -4.25 -23.35 16 12 C 0.20 9.02 4.49 85.56 0.38 9.40 16 13 C -0.51 -26.37 8.41 25.60 0.22 -26.15 16 14 H 0.06 3.02 7.29 -2.91 -0.02 3.00 16 15 C 0.01 0.55 5.46 84.66 0.46 1.01 16 16 N -0.93 -52.03 13.29 21.45 0.28 -51.74 16 17 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 C 0.07 2.43 4.73 86.31 0.41 2.83 16 22 C -0.06 -1.77 4.93 28.79 0.14 -1.63 16 23 C 0.24 7.54 15.44 89.41 1.38 8.92 16 24 N -0.49 -17.32 18.55 20.04 0.37 -16.95 16 25 C -0.07 -1.88 9.69 22.25 0.22 -1.67 16 26 C -0.20 -4.76 8.78 22.37 0.20 -4.57 16 27 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.73 8.03 -2.38 -0.02 0.71 16 31 H 0.07 0.68 8.11 -2.39 -0.02 0.66 16 32 H 0.13 1.19 8.01 -2.39 -0.02 1.17 16 33 H 0.11 1.50 6.70 -2.39 -0.02 1.48 16 34 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 35 H 0.14 2.83 7.26 -2.91 -0.02 2.81 16 36 H 0.06 1.44 6.03 -2.39 -0.01 1.42 16 37 H 0.07 2.26 7.88 -2.39 -0.02 2.24 16 38 H 0.00 -0.06 6.04 -2.39 -0.01 -0.07 16 39 H 0.01 0.36 7.93 -2.39 -0.02 0.35 16 40 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 41 H 0.07 2.48 6.94 -2.38 -0.02 2.46 16 42 H 0.08 2.45 5.90 -2.39 -0.01 2.44 16 43 H 0.13 2.88 5.71 -2.39 -0.01 2.87 16 44 H 0.11 3.53 6.35 -2.39 -0.02 3.52 16 45 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 46 H 0.14 2.96 5.86 -2.92 -0.02 2.94 16 Total: -1.00 -63.42 379.78 3.68 -59.74 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.99 Total: 14.46 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 6.21 Total: -10.22 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -3.59 Total: -92.05 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -1.95 Total: -16.76 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -63.42 3.68 -59.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775961788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.547 kcal (2) G-P(sol) polarization free energy of solvation -63.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds