Wall clock time and date at job start Tue Mar 31 2020 13:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42908 * 109.47241 * 326.45549 * 3 2 1 5 5 C 1.35997 * 117.00113 * 179.97438 * 4 3 2 6 6 C 1.38698 * 119.98073 * 0.27488 * 5 4 3 7 7 C 1.38112 * 120.02036 * 180.23112 * 6 5 4 8 8 C 1.38863 * 119.97875 * 359.49674 * 7 6 5 9 9 N 1.39938 * 120.02035 * 180.27708 * 8 7 6 10 10 C 1.46506 * 119.99940 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.46802 * 179.97438 * 10 9 8 12 12 H 1.08995 * 109.47838 * 305.00125 * 11 10 9 13 13 O 1.42900 * 109.47242 * 65.00503 * 11 10 9 14 14 C 1.52999 * 109.46903 * 184.99590 * 11 10 9 15 15 N 1.46907 * 109.47361 * 178.50919 * 14 11 10 16 16 C 1.46896 * 110.99876 * 164.01280 * 15 14 11 17 17 C 1.46895 * 110.99817 * 287.97169 * 15 14 11 18 18 C 1.50704 * 109.46953 * 169.99604 * 17 15 14 19 19 H 1.07996 * 119.99783 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99863 * 179.97438 * 18 17 15 21 21 N 1.31518 * 119.99780 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00289 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47102 * 89.99688 * 22 20 18 24 24 H 1.48503 * 109.47063 * 210.00043 * 22 20 18 25 25 H 1.48502 * 109.46928 * 329.99575 * 22 20 18 26 26 C 1.38870 * 119.96005 * 0.25065 * 8 7 6 27 27 C 1.38110 * 119.97932 * 0.02562 * 26 8 7 28 28 H 4.38456 * 5.44524 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47065 * 206.46099 * 3 2 1 30 30 H 1.08998 * 109.47364 * 86.45585 * 3 2 1 31 31 H 1.08005 * 119.99435 * 0.02562 * 6 5 4 32 32 H 1.08000 * 120.01232 * 179.77614 * 7 6 5 33 33 H 0.97002 * 120.00119 * 359.97438 * 9 8 7 34 34 H 1.09000 * 109.47116 * 299.99642 * 10 9 8 35 35 H 1.09004 * 109.46822 * 59.99537 * 10 9 8 36 36 H 0.96702 * 114.00865 * 59.99135 * 13 11 10 37 37 H 1.09000 * 109.47631 * 298.51410 * 14 11 10 38 38 H 1.09007 * 109.46798 * 58.51473 * 14 11 10 39 39 H 1.08996 * 109.47342 * 65.49410 * 16 15 14 40 40 H 1.09008 * 109.46726 * 185.48358 * 16 15 14 41 41 H 1.08989 * 109.47321 * 305.48539 * 16 15 14 42 42 H 1.09000 * 109.47166 * 289.99146 * 17 15 14 43 43 H 1.08998 * 109.47606 * 49.99864 * 17 15 14 44 44 H 0.97002 * 120.00025 * 180.02562 * 21 20 18 45 45 H 1.08004 * 120.00761 * 180.02562 * 26 8 7 46 46 H 1.08004 * 119.98530 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1228 -1.1221 0.7445 5 6 4.4711 -1.2703 0.8425 6 6 5.3152 -0.3500 0.2389 7 6 6.6846 -0.5024 0.3339 8 6 7.2163 -1.5715 1.0428 9 7 8.6037 -1.7235 1.1445 10 6 9.1641 -2.8514 1.8930 11 6 10.6920 -2.7840 1.8485 12 1 11.0239 -2.7430 0.8112 13 8 11.1375 -1.6142 2.5378 14 6 11.2770 -4.0268 2.5225 15 7 12.7434 -3.9796 2.4483 16 6 13.3490 -4.9296 3.3910 17 6 13.2094 -4.2285 1.0776 18 6 14.6843 -3.9325 0.9869 19 1 15.2217 -3.5938 1.8603 20 6 15.3477 -4.0951 -0.2108 21 7 16.6347 -3.8363 -0.2900 22 14 14.4182 -4.6816 -1.7212 23 1 13.8851 -3.5093 -2.4605 24 1 15.3374 -5.4462 -2.6021 25 1 13.2934 -5.5557 -1.3018 26 6 6.3704 -2.4895 1.6513 27 6 5.0013 -2.3387 1.5504 28 1 -1.0500 -0.0002 0.0003 29 1 3.0088 0.9208 0.4579 30 1 3.0093 -0.0627 -1.0257 31 1 4.9016 0.4842 -0.3083 32 1 7.3418 0.2123 -0.1392 33 1 9.1943 -1.0821 0.7194 34 1 8.8280 -2.8030 2.9287 35 1 8.8287 -3.7870 1.4454 36 1 10.8775 -1.5830 3.4687 37 1 10.9667 -4.0537 3.5671 38 1 10.9160 -4.9203 2.0130 39 1 13.0985 -5.9474 3.0924 40 1 14.4321 -4.8058 3.3860 41 1 12.9663 -4.7403 4.3937 42 1 13.0316 -5.2719 0.8172 43 1 12.6664 -3.5839 0.3865 44 1 17.1014 -3.9503 -1.1327 45 1 6.7831 -3.3211 2.2032 46 1 4.3433 -3.0524 2.0239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819439412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:06 Heat of formation + Delta-G solvation = 11.654728 kcal Electronic energy + Delta-G solvation = -25204.193557 eV Core-core repulsion = 21482.353313 eV Total energy + Delta-G solvation = -3721.840244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.35031 -38.77885 -37.81900 -35.87531 -34.63202 -33.63585 -32.46808 -31.31694 -30.44434 -28.71270 -28.05896 -27.45427 -25.59694 -23.65462 -23.03585 -21.82050 -21.38237 -20.04377 -18.83492 -18.48806 -17.26511 -17.05188 -16.52120 -16.28944 -16.04195 -15.74089 -14.96383 -14.92196 -14.58986 -14.32627 -13.96817 -13.81881 -13.73995 -13.45959 -13.24221 -13.15857 -12.92151 -12.64286 -12.35022 -12.32201 -11.82011 -11.62281 -11.42474 -11.31942 -11.13037 -10.92611 -10.78245 -10.64638 -10.54480 -10.25689 -9.95434 -9.77649 -9.65958 -9.26599 -9.17706 -8.58034 -7.40975 -7.23866 -6.06326 -4.03382 1.17661 1.48531 1.92774 2.30830 3.25783 3.27901 3.33450 3.33862 3.35763 3.69402 3.99126 4.39512 4.43277 4.60314 4.65239 4.67551 4.78284 4.84690 5.03059 5.12015 5.13663 5.20300 5.26959 5.34512 5.39836 5.47524 5.51231 5.52881 5.81829 5.82471 5.86171 5.97165 6.16830 6.19491 6.21381 6.22192 6.47560 6.61464 6.80126 6.92167 7.04506 7.10589 7.31582 7.55303 7.67963 7.80520 7.94866 7.98680 8.63780 9.02789 9.55075 11.06906 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022308 B = 0.002045 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.841064 B =13689.586700 C =14351.635755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.197 4.197 3 C 0.174 3.826 4 O -0.316 6.316 5 C 0.061 3.939 6 C -0.156 4.156 7 C -0.159 4.159 8 C 0.193 3.807 9 N -0.740 5.740 10 C 0.094 3.906 11 C 0.102 3.898 12 H 0.106 0.894 13 O -0.537 6.537 14 C 0.025 3.975 15 N -0.521 5.521 16 C 0.039 3.961 17 C 0.161 3.839 18 C -0.507 4.507 19 H 0.081 0.919 20 C 0.068 3.932 21 N -0.900 5.900 22 Si 0.873 3.127 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.269 1.269 26 C -0.162 4.162 27 C -0.097 4.097 28 H 0.224 0.776 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.405 0.595 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.367 0.633 37 H 0.068 0.932 38 H 0.034 0.966 39 H 0.012 0.988 40 H 0.080 0.920 41 H 0.047 0.953 42 H -0.013 1.013 43 H 0.023 0.977 44 H 0.263 0.737 45 H 0.128 0.872 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.197 5.522 3.305 28.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.197 4.197 3 C 0.099 3.901 4 O -0.231 6.231 5 C 0.015 3.985 6 C -0.175 4.175 7 C -0.182 4.182 8 C 0.090 3.910 9 N -0.371 5.371 10 C -0.032 4.032 11 C 0.042 3.958 12 H 0.124 0.876 13 O -0.341 6.341 14 C -0.105 4.105 15 N -0.245 5.245 16 C -0.109 4.109 17 C 0.035 3.965 18 C -0.545 4.545 19 H 0.099 0.901 20 C -0.133 4.133 21 N -0.539 5.539 22 Si 0.700 3.300 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.194 1.194 26 C -0.185 4.185 27 C -0.116 4.116 28 H 0.241 0.759 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.241 0.759 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.213 0.787 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.030 0.970 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.004 0.996 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.146 0.854 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -27.695 5.836 2.913 28.453 hybrid contribution -0.770 -0.931 -0.953 1.538 sum -28.465 4.905 1.961 28.951 Atomic orbital electron populations 1.25010 0.95881 0.97935 0.99398 1.22374 0.93664 1.02168 1.01479 1.19194 0.84701 0.89412 0.96779 1.86077 1.19750 1.46343 1.70903 1.18634 0.81349 0.97226 1.01252 1.20946 0.93602 0.99938 1.03046 1.20403 0.94617 0.99198 1.03958 1.17815 0.84157 0.94099 0.94961 1.44611 1.02555 1.30470 1.59417 1.22079 0.95103 0.89811 0.96179 1.22124 0.89208 0.86143 0.98306 0.87644 1.86685 1.79868 1.41031 1.26505 1.22666 0.91702 0.96203 0.99939 1.61855 1.02720 1.50944 1.08940 1.22232 1.01884 0.92536 0.94281 1.20232 0.97484 0.93788 0.84966 1.21013 0.91214 1.44461 0.97851 0.90097 1.24897 0.94764 0.95175 0.98493 1.69892 1.08325 1.49393 1.26264 0.86898 0.80117 0.79348 0.83595 1.20120 1.21148 1.19396 1.20473 0.92004 1.00991 1.05028 1.20140 0.94403 0.97027 1.00057 0.75938 0.89776 0.89777 0.85641 0.85759 0.75916 0.92086 0.91675 0.78719 0.91349 0.94827 0.96992 0.90142 0.93462 0.99562 0.95888 0.92668 0.85438 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 19.25 29.55 0.57 -0.56 16 2 C -0.20 -1.68 13.73 -37.12 -0.51 -2.19 16 3 C 0.17 1.37 5.21 34.37 0.18 1.55 16 4 O -0.32 -3.39 10.10 -19.73 -0.20 -3.59 16 5 C 0.06 0.65 6.69 -39.24 -0.26 0.39 16 6 C -0.16 -1.50 9.03 -39.46 -0.36 -1.85 16 7 C -0.16 -1.63 9.89 -39.40 -0.39 -2.02 16 8 C 0.19 2.14 6.66 -83.69 -0.56 1.59 16 9 N -0.74 -8.22 5.69 -58.58 -0.33 -8.56 16 10 C 0.09 1.01 4.55 -4.04 -0.02 0.99 16 11 C 0.10 1.43 3.02 -26.73 -0.08 1.35 16 12 H 0.11 1.73 6.55 -51.93 -0.34 1.39 16 13 O -0.54 -7.97 13.18 -35.23 -0.46 -8.43 16 14 C 0.02 0.37 4.63 -3.82 -0.02 0.35 16 15 N -0.52 -10.42 4.60 -244.37 -1.12 -11.55 16 16 C 0.04 0.72 9.32 60.06 0.56 1.28 16 17 C 0.16 3.84 3.64 -4.98 -0.02 3.82 16 18 C -0.51 -14.38 9.09 -34.44 -0.31 -14.69 16 19 H 0.08 2.51 7.34 -52.49 -0.39 2.12 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 22 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 26 C -0.16 -1.71 9.31 -39.39 -0.37 -2.08 16 27 C -0.10 -1.02 9.98 -39.46 -0.39 -1.42 16 28 H 0.22 0.65 7.80 -54.09 -0.42 0.23 16 29 H 0.08 0.52 7.65 -51.93 -0.40 0.13 16 30 H 0.08 0.53 7.67 -51.93 -0.40 0.13 16 31 H 0.13 0.89 6.29 -52.48 -0.33 0.56 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.41 4.59 8.49 -40.82 -0.35 4.25 16 34 H 0.06 0.58 7.95 -51.93 -0.41 0.16 16 35 H 0.07 0.68 7.95 -51.93 -0.41 0.27 16 36 H 0.37 4.09 9.05 45.56 0.41 4.50 16 37 H 0.07 0.86 7.88 -51.93 -0.41 0.45 16 38 H 0.03 0.50 8.05 -51.92 -0.42 0.08 16 39 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 40 H 0.08 1.67 6.90 -51.92 -0.36 1.31 16 41 H 0.05 0.72 7.97 -51.94 -0.41 0.30 16 42 H -0.01 -0.32 7.17 -51.93 -0.37 -0.69 16 43 H 0.02 0.55 5.81 -51.93 -0.30 0.25 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.13 1.19 6.73 -52.48 -0.35 0.83 16 46 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -33.66 385.01 -8.38 -42.04 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.09 Total: 5.95 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.07 Total: -11.63 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.68 Total: -46.90 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.66 Total: -12.02 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.66 -8.38 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819439412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.695 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds