Wall clock time and date at job start Tue Mar 31 2020 13:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42908 * 109.47241 * 326.45549 * 3 2 1 5 5 C 1.35997 * 117.00113 * 179.97438 * 4 3 2 6 6 C 1.38698 * 119.98073 * 0.27488 * 5 4 3 7 7 C 1.38112 * 120.02036 * 180.23112 * 6 5 4 8 8 C 1.38863 * 119.97875 * 359.49674 * 7 6 5 9 9 N 1.39938 * 120.02035 * 180.27708 * 8 7 6 10 10 C 1.46506 * 119.99940 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.46802 * 179.97438 * 10 9 8 12 12 H 1.08995 * 109.47838 * 305.00125 * 11 10 9 13 13 O 1.42900 * 109.47242 * 65.00503 * 11 10 9 14 14 C 1.52999 * 109.46903 * 184.99590 * 11 10 9 15 15 N 1.46907 * 109.47361 * 178.50919 * 14 11 10 16 16 C 1.46896 * 110.99876 * 164.01280 * 15 14 11 17 17 C 1.46895 * 110.99817 * 287.97169 * 15 14 11 18 18 C 1.50704 * 109.46953 * 169.99604 * 17 15 14 19 19 H 1.07996 * 119.99783 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99863 * 179.97438 * 18 17 15 21 21 N 1.31518 * 119.99780 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00289 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47102 * 89.99688 * 22 20 18 24 24 H 1.48503 * 109.47063 * 210.00043 * 22 20 18 25 25 H 1.48502 * 109.46928 * 329.99575 * 22 20 18 26 26 C 1.38870 * 119.96005 * 0.25065 * 8 7 6 27 27 C 1.38110 * 119.97932 * 0.02562 * 26 8 7 28 28 H 4.38456 * 5.44524 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47065 * 206.46099 * 3 2 1 30 30 H 1.08998 * 109.47364 * 86.45585 * 3 2 1 31 31 H 1.08005 * 119.99435 * 0.02562 * 6 5 4 32 32 H 1.08000 * 120.01232 * 179.77614 * 7 6 5 33 33 H 0.97002 * 120.00119 * 359.97438 * 9 8 7 34 34 H 1.09000 * 109.47116 * 299.99642 * 10 9 8 35 35 H 1.09004 * 109.46822 * 59.99537 * 10 9 8 36 36 H 0.96702 * 114.00865 * 59.99135 * 13 11 10 37 37 H 1.09000 * 109.47631 * 298.51410 * 14 11 10 38 38 H 1.09007 * 109.46798 * 58.51473 * 14 11 10 39 39 H 1.08996 * 109.47342 * 65.49410 * 16 15 14 40 40 H 1.09008 * 109.46726 * 185.48358 * 16 15 14 41 41 H 1.08989 * 109.47321 * 305.48539 * 16 15 14 42 42 H 1.09000 * 109.47166 * 289.99146 * 17 15 14 43 43 H 1.08998 * 109.47606 * 49.99864 * 17 15 14 44 44 H 0.97002 * 120.00025 * 180.02562 * 21 20 18 45 45 H 1.08004 * 120.00761 * 180.02562 * 26 8 7 46 46 H 1.08004 * 119.98530 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1228 -1.1221 0.7445 5 6 4.4711 -1.2703 0.8425 6 6 5.3152 -0.3500 0.2389 7 6 6.6846 -0.5024 0.3339 8 6 7.2163 -1.5715 1.0428 9 7 8.6037 -1.7235 1.1445 10 6 9.1641 -2.8514 1.8930 11 6 10.6920 -2.7840 1.8485 12 1 11.0239 -2.7430 0.8112 13 8 11.1375 -1.6142 2.5378 14 6 11.2770 -4.0268 2.5225 15 7 12.7434 -3.9796 2.4483 16 6 13.3490 -4.9296 3.3910 17 6 13.2094 -4.2285 1.0776 18 6 14.6843 -3.9325 0.9869 19 1 15.2217 -3.5938 1.8603 20 6 15.3477 -4.0951 -0.2108 21 7 16.6347 -3.8363 -0.2900 22 14 14.4182 -4.6816 -1.7212 23 1 13.8851 -3.5093 -2.4605 24 1 15.3374 -5.4462 -2.6021 25 1 13.2934 -5.5557 -1.3018 26 6 6.3704 -2.4895 1.6513 27 6 5.0013 -2.3387 1.5504 28 1 -1.0500 -0.0002 0.0003 29 1 3.0088 0.9208 0.4579 30 1 3.0093 -0.0627 -1.0257 31 1 4.9016 0.4842 -0.3083 32 1 7.3418 0.2123 -0.1392 33 1 9.1943 -1.0821 0.7194 34 1 8.8280 -2.8030 2.9287 35 1 8.8287 -3.7870 1.4454 36 1 10.8775 -1.5830 3.4687 37 1 10.9667 -4.0537 3.5671 38 1 10.9160 -4.9203 2.0130 39 1 13.0985 -5.9474 3.0924 40 1 14.4321 -4.8058 3.3860 41 1 12.9663 -4.7403 4.3937 42 1 13.0316 -5.2719 0.8172 43 1 12.6664 -3.5839 0.3865 44 1 17.1014 -3.9503 -1.1327 45 1 6.7831 -3.3211 2.2032 46 1 4.3433 -3.0524 2.0239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819439412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:05 Heat of formation + Delta-G solvation = -13.974661 kcal Electronic energy + Delta-G solvation = -25205.304931 eV Core-core repulsion = 21482.353313 eV Total energy + Delta-G solvation = -3722.951618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08320 -39.77755 -38.80318 -37.22754 -35.48478 -34.59651 -34.23182 -32.08501 -31.50016 -30.09051 -29.33987 -28.28840 -26.70883 -25.11275 -24.04227 -22.93295 -22.18581 -21.60037 -19.37710 -19.20043 -19.05923 -18.08759 -17.56023 -17.14757 -16.92140 -16.70929 -16.35593 -16.15952 -15.70295 -15.53253 -15.17916 -14.94844 -14.55822 -14.50487 -14.47743 -14.18377 -14.15860 -13.75112 -13.59414 -13.22891 -13.09113 -13.01251 -12.62635 -12.53469 -12.39851 -12.29996 -11.96040 -11.87644 -11.68296 -11.47946 -11.42217 -11.21327 -10.84788 -10.78082 -10.41244 -9.92526 -8.96035 -8.28711 -8.02463 -6.31482 0.42900 0.70781 1.32507 1.33626 1.34877 1.43700 1.76750 2.32667 2.45035 2.74072 2.92975 3.04275 3.21445 3.48331 3.65160 3.84744 3.95184 4.00546 4.06510 4.16312 4.26018 4.32918 4.41553 4.43845 4.50458 4.56239 4.60491 4.69401 4.73303 4.77468 4.90797 4.96138 5.00521 5.09484 5.10856 5.15923 5.21475 5.40668 5.47221 5.54982 5.73479 5.97813 6.33571 6.37645 6.52595 6.57698 6.66284 6.75189 6.83853 7.01950 7.31722 8.88143 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022308 B = 0.002045 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.841064 B =13689.586700 C =14351.635755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.245 4.245 3 C 0.168 3.832 4 O -0.334 6.334 5 C 0.051 3.949 6 C -0.156 4.156 7 C -0.168 4.168 8 C 0.180 3.820 9 N -0.744 5.744 10 C 0.106 3.894 11 C 0.110 3.890 12 H 0.077 0.923 13 O -0.559 6.559 14 C 0.025 3.975 15 N -0.541 5.541 16 C 0.042 3.958 17 C 0.173 3.827 18 C -0.515 4.515 19 H 0.036 0.964 20 C 0.006 3.994 21 N -0.949 5.949 22 Si 0.945 3.055 23 H -0.266 1.266 24 H -0.281 1.281 25 H -0.250 1.250 26 C -0.167 4.167 27 C -0.109 4.109 28 H 0.256 0.744 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.134 0.866 33 H 0.402 0.598 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.383 0.617 37 H 0.102 0.898 38 H 0.043 0.957 39 H 0.018 0.982 40 H 0.043 0.957 41 H 0.084 0.916 42 H -0.014 1.014 43 H 0.026 0.974 44 H 0.266 0.734 45 H 0.140 0.860 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.425 5.211 3.119 32.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.245 4.245 3 C 0.094 3.906 4 O -0.249 6.249 5 C 0.005 3.995 6 C -0.175 4.175 7 C -0.190 4.190 8 C 0.077 3.923 9 N -0.375 5.375 10 C -0.019 4.019 11 C 0.049 3.951 12 H 0.094 0.906 13 O -0.365 6.365 14 C -0.104 4.104 15 N -0.265 5.265 16 C -0.106 4.106 17 C 0.046 3.954 18 C -0.553 4.553 19 H 0.054 0.946 20 C -0.191 4.191 21 N -0.590 5.590 22 Si 0.768 3.232 23 H -0.191 1.191 24 H -0.207 1.207 25 H -0.174 1.174 26 C -0.189 4.189 27 C -0.128 4.128 28 H 0.273 0.727 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.165 0.835 32 H 0.152 0.848 33 H 0.237 0.763 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.231 0.769 37 H 0.120 0.880 38 H 0.061 0.939 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.003 0.997 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.158 0.842 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -30.956 5.525 2.760 31.567 hybrid contribution 0.184 -0.761 -0.782 1.107 sum -30.772 4.764 1.978 31.202 Atomic orbital electron populations 1.25912 0.96795 0.96098 0.97650 1.22861 0.94571 1.03914 1.03187 1.19402 0.84801 0.89109 0.97296 1.86042 1.19762 1.47637 1.71497 1.18830 0.81627 0.97577 1.01456 1.21185 0.93291 1.00312 1.02711 1.20622 0.95122 0.99328 1.03944 1.17974 0.84095 0.94682 0.95586 1.44594 1.02600 1.30549 1.59726 1.21933 0.92513 0.90044 0.97398 1.21951 0.91181 0.85388 0.96545 0.90555 1.86645 1.80453 1.41469 1.27963 1.22802 0.88187 0.97037 1.02387 1.61710 1.06133 1.51712 1.06898 1.22191 0.99813 0.92667 0.95937 1.19946 0.94381 0.93419 0.87667 1.21296 0.93772 1.43809 0.96470 0.94558 1.25853 0.95624 0.95369 1.02215 1.70056 1.10355 1.51160 1.27389 0.85753 0.79121 0.79330 0.78974 1.19134 1.20703 1.17355 1.20622 0.91959 1.01260 1.05072 1.20347 0.94722 0.97403 1.00306 0.72743 0.88450 0.88573 0.83455 0.84822 0.76282 0.90107 0.90970 0.76872 0.88009 0.93895 0.96328 0.93829 0.89763 0.99663 0.95603 0.92496 0.84248 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 19.25 74.32 1.43 -0.31 16 2 C -0.25 -3.94 13.73 31.13 0.43 -3.51 16 3 C 0.17 2.48 5.21 70.18 0.37 2.85 16 4 O -0.33 -6.91 10.10 -93.52 -0.94 -7.85 16 5 C 0.05 1.03 6.69 22.49 0.15 1.18 16 6 C -0.16 -2.76 9.03 22.35 0.20 -2.56 16 7 C -0.17 -3.20 9.89 22.39 0.22 -2.98 16 8 C 0.18 3.69 6.66 38.15 0.25 3.94 16 9 N -0.74 -15.25 5.69 -339.25 -1.93 -17.18 16 10 C 0.11 2.01 4.55 86.38 0.39 2.41 16 11 C 0.11 2.84 3.02 30.59 0.09 2.93 16 12 H 0.08 2.44 6.55 -2.39 -0.02 2.42 16 13 O -0.56 -15.76 13.18 -148.98 -1.96 -17.72 16 14 C 0.02 0.68 4.63 86.30 0.40 1.07 16 15 N -0.54 -21.09 4.60 -927.05 -4.27 -25.36 16 16 C 0.04 1.51 9.32 127.69 1.19 2.70 16 17 C 0.17 8.17 3.64 85.56 0.31 8.48 16 18 C -0.52 -30.07 9.09 25.60 0.23 -29.84 16 19 H 0.04 2.38 7.34 -2.91 -0.02 2.35 16 20 C 0.01 0.38 5.47 84.65 0.46 0.84 16 21 N -0.95 -59.95 13.96 21.45 0.30 -59.66 16 22 Si 0.94 44.24 27.47 68.60 1.88 46.12 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 26 C -0.17 -3.22 9.31 22.39 0.21 -3.01 16 27 C -0.11 -2.16 9.98 22.35 0.22 -1.93 16 28 H 0.26 0.75 7.80 -4.42 -0.03 0.71 16 29 H 0.10 1.10 7.65 -2.39 -0.02 1.08 16 30 H 0.10 1.11 7.67 -2.39 -0.02 1.09 16 31 H 0.15 1.82 6.29 -2.91 -0.02 1.80 16 32 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.40 8.67 8.49 -92.71 -0.79 7.88 16 34 H 0.08 1.24 7.95 -2.39 -0.02 1.22 16 35 H 0.07 1.29 7.95 -2.39 -0.02 1.27 16 36 H 0.38 7.69 9.05 -74.06 -0.67 7.02 16 37 H 0.10 2.12 7.88 -2.39 -0.02 2.10 16 38 H 0.04 1.13 8.05 -2.38 -0.02 1.11 16 39 H 0.02 0.63 8.13 -2.39 -0.02 0.61 16 40 H 0.04 1.86 6.90 -2.38 -0.02 1.84 16 41 H 0.08 2.36 7.97 -2.39 -0.02 2.34 16 42 H -0.01 -0.67 7.17 -2.39 -0.02 -0.69 16 43 H 0.03 1.21 5.81 -2.39 -0.01 1.20 16 44 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 45 H 0.14 2.24 6.73 -2.91 -0.02 2.22 16 46 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -75.20 385.01 -0.87 -76.07 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.52 Total: 23.32 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 6.57 Total: -17.75 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -5.90 Total: -102.19 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -2.91 Total: -25.57 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.12 kcal Total: -75.20 -0.87 -76.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819439412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.093 kcal (2) G-P(sol) polarization free energy of solvation -75.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds