Wall clock time and date at job start Tue Mar 31 2020 12:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46847 * 2 1 4 4 N 1.41602 * 114.00050 * 184.99067 * 3 2 1 5 5 C 1.46501 * 119.99582 * 275.12860 * 4 3 2 6 6 C 1.50706 * 109.47301 * 255.00177 * 5 4 3 7 7 C 1.38234 * 119.99416 * 269.72585 * 6 5 4 8 8 C 1.38236 * 119.99340 * 179.76684 * 7 6 5 9 9 C 1.38231 * 120.00108 * 0.50246 * 8 7 6 10 10 C 1.38232 * 120.00114 * 359.75459 * 9 8 7 11 11 C 1.38230 * 119.99696 * 89.99915 * 6 5 4 12 12 C 1.34769 * 120.00289 * 95.12862 * 4 3 2 13 13 O 1.21588 * 119.99691 * 186.40577 * 12 4 3 14 14 N 1.34774 * 120.00136 * 6.41421 * 12 4 3 15 15 C 1.46505 * 119.99937 * 185.18722 * 14 12 4 16 16 C 1.53001 * 109.46896 * 184.89785 * 15 14 12 17 17 C 1.50696 * 115.55313 * 53.90067 * 16 15 14 18 18 H 1.07999 * 120.00154 * 215.55099 * 17 16 15 19 19 C 1.37876 * 119.99759 * 35.27269 * 17 16 15 20 20 N 1.31512 * 120.00271 * 0.16521 * 19 17 16 21 21 Si 1.86799 * 119.99743 * 180.16519 * 19 17 16 22 22 H 1.48506 * 109.47219 * 65.00022 * 21 19 17 23 23 H 1.48502 * 109.47337 * 184.99986 * 21 19 17 24 24 H 1.48498 * 109.47594 * 305.00042 * 21 19 17 25 25 C 1.53004 * 117.49474 * 199.57162 * 16 15 14 26 26 C 1.53000 * 117.49547 * 268.22900 * 16 15 14 27 27 H 1.08996 * 109.46788 * 184.96217 * 1 2 3 28 28 H 1.08995 * 109.47097 * 304.96191 * 1 2 3 29 29 H 1.08999 * 109.47180 * 64.96715 * 1 2 3 30 30 H 1.09003 * 109.47144 * 240.00429 * 2 1 3 31 31 H 1.08993 * 109.47664 * 120.00017 * 2 1 3 32 32 H 1.09008 * 109.46872 * 14.99703 * 5 4 3 33 33 H 1.08997 * 109.47225 * 135.00048 * 5 4 3 34 34 H 1.07999 * 120.00342 * 359.97438 * 7 6 5 35 35 H 1.08001 * 119.99692 * 180.23484 * 8 7 6 36 36 H 1.08003 * 120.00157 * 179.72407 * 9 8 7 37 37 H 1.08001 * 120.00264 * 179.97438 * 10 9 8 38 38 H 1.07995 * 120.00786 * 0.02562 * 11 6 5 39 39 H 0.96999 * 120.00085 * 5.18217 * 14 12 4 40 40 H 1.08994 * 109.47457 * 64.89748 * 15 14 12 41 41 H 1.08999 * 109.46659 * 304.89685 * 15 14 12 42 42 H 0.97000 * 119.99814 * 174.98764 * 20 19 17 43 43 H 1.09001 * 117.49635 * 215.00303 * 25 16 15 44 44 H 1.08994 * 117.50113 * 0.02562 * 25 16 15 45 45 H 1.09003 * 117.50122 * 359.97326 * 26 16 15 46 46 H 1.09004 * 117.49769 * 144.97724 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4133 1.4608 -0.1125 5 6 4.2534 1.3699 1.0842 6 6 4.7457 2.7444 1.4580 7 6 5.9398 3.2142 0.9440 8 6 6.3890 4.4768 1.2831 9 6 5.6492 5.2654 2.1443 10 6 4.4578 4.7934 2.6625 11 6 4.0059 3.5328 2.3193 12 6 3.9794 1.6525 -1.3204 13 8 5.1898 1.6336 -1.4343 14 7 3.2040 1.8653 -2.4020 15 6 3.8116 1.9603 -3.7317 16 6 2.7371 2.3232 -4.7587 17 6 1.9294 3.5565 -4.4462 18 1 0.8819 3.5961 -4.7060 19 6 2.5264 4.6320 -3.8235 20 7 3.8015 4.5829 -3.5052 21 14 1.5241 6.1589 -3.4321 22 1 0.4780 5.8218 -2.4334 23 1 2.4168 7.2087 -2.8785 24 1 0.8806 6.6603 -4.6729 25 6 3.0382 2.0299 -6.2298 26 6 2.0228 1.1724 -5.4703 27 1 -0.3633 -1.0238 0.0889 28 1 -0.3633 0.5889 0.8422 29 1 -0.3633 0.4348 -0.9311 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.6701 0.9567 1.9071 33 1 5.1057 0.7214 0.8813 34 1 6.5201 2.5962 0.2749 35 1 7.3200 4.8454 0.8785 36 1 6.0024 6.2501 2.4128 37 1 3.8800 5.4093 3.3357 38 1 3.0755 3.1638 2.7247 39 1 2.2436 1.9554 -2.3001 40 1 4.2583 1.0020 -3.9964 41 1 4.5825 2.7309 -3.7246 42 1 4.2391 5.3649 -3.1338 43 1 2.6522 2.7290 -6.9716 44 1 4.0016 1.5780 -6.4660 45 1 2.3187 0.1568 -5.2072 46 1 0.9685 1.3072 -5.7121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838576417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:43 Heat of formation + Delta-G solvation = 31.279826 kcal Electronic energy + Delta-G solvation = -27922.114728 eV Core-core repulsion = 24201.125492 eV Total energy + Delta-G solvation = -3720.989236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.64020 -38.55632 -37.21592 -36.55325 -33.77938 -32.88866 -32.09728 -31.30838 -30.58584 -29.58416 -26.64184 -25.53797 -24.41332 -22.78842 -22.28647 -21.35089 -21.14576 -19.77901 -19.18910 -18.03807 -17.05562 -16.41085 -15.94484 -15.47806 -14.93839 -14.78786 -14.75588 -14.64716 -14.52704 -13.89579 -13.75494 -13.14614 -13.09299 -12.80068 -12.69154 -12.58642 -12.31691 -12.05050 -11.94996 -11.67449 -11.53503 -11.32511 -10.99926 -10.99479 -10.70539 -10.70114 -10.48422 -10.22332 -10.17446 -9.67719 -9.31995 -8.95528 -8.78766 -8.66075 -8.55771 -8.46139 -8.20445 -7.66170 -5.92363 -4.10306 1.45745 1.72774 2.39589 3.29596 3.37022 3.37142 3.77583 4.13668 4.27220 4.38490 4.97146 5.02158 5.04070 5.07647 5.18339 5.24761 5.27730 5.36639 5.39049 5.46797 5.54191 5.66211 5.83240 5.87875 5.89364 5.93198 6.05634 6.11756 6.24503 6.33912 6.36222 6.59131 6.63191 6.70733 6.73673 6.81269 6.89605 6.92228 6.93307 7.09632 7.28779 7.29610 7.58887 7.70750 7.80181 8.04874 8.37741 8.82704 8.97236 9.42713 9.53034 10.98737 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.005636 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.726868 B = 4966.459083 C = 5990.119569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.023 3.977 3 O -0.144 6.144 4 N -0.499 5.499 5 C 0.182 3.818 6 C -0.107 4.107 7 C -0.077 4.077 8 C -0.126 4.126 9 C -0.117 4.117 10 C -0.133 4.133 11 C -0.099 4.099 12 C 0.714 3.286 13 O -0.584 6.584 14 N -0.689 5.689 15 C 0.179 3.821 16 C 0.040 3.960 17 C -0.499 4.499 18 H 0.058 0.942 19 C 0.079 3.921 20 N -0.861 5.861 21 Si 0.891 3.109 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.278 1.278 25 C -0.198 4.198 26 C -0.213 4.213 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.400 0.600 40 H 0.014 0.986 41 H 0.116 0.884 42 H 0.262 0.738 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 -6.273 11.828 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.056 4.056 3 O -0.149 6.149 4 N -0.282 5.282 5 C 0.061 3.939 6 C -0.109 4.109 7 C -0.096 4.096 8 C -0.144 4.144 9 C -0.136 4.136 10 C -0.151 4.151 11 C -0.117 4.117 12 C 0.416 3.584 13 O -0.464 6.464 14 N -0.339 5.339 15 C 0.055 3.945 16 C 0.039 3.961 17 C -0.536 4.536 18 H 0.077 0.923 19 C -0.127 4.127 20 N -0.496 5.496 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.236 4.236 26 C -0.251 4.251 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.152 0.848 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.234 0.766 40 H 0.032 0.968 41 H 0.134 0.866 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.076 -6.043 11.836 13.290 hybrid contribution -1.217 0.777 0.093 1.447 sum -1.141 -5.265 11.930 13.090 Atomic orbital electron populations 1.21705 0.92672 1.02447 1.03657 1.23016 0.95668 0.85980 1.00896 1.90651 1.03675 1.24561 1.95987 1.49368 0.93679 1.79024 1.06160 1.20278 0.93719 0.93812 0.86116 1.20128 0.95415 0.97300 0.98040 1.21308 0.95662 0.95882 0.96705 1.21150 1.00289 0.94679 0.98277 1.21118 0.95357 0.99338 0.97739 1.21026 0.96792 0.96090 1.01193 1.20979 0.98714 0.94311 0.97724 1.15823 0.85083 0.78340 0.79147 1.90835 1.11896 1.60877 1.82755 1.44832 1.10462 1.72851 1.05771 1.20987 0.96763 0.98194 0.78509 1.19209 0.95192 0.93027 0.88665 1.20391 0.95628 0.98205 1.39372 0.92346 1.24943 0.95063 0.98430 0.94218 1.69816 1.09528 1.28986 1.41304 0.86673 0.80090 0.82762 0.78591 1.20207 1.21281 1.20312 1.22930 0.97903 1.03579 0.99238 1.22947 0.96868 0.95420 1.09823 0.90843 0.91741 0.91178 0.92407 0.93082 0.89545 0.89397 0.84823 0.86299 0.86603 0.86557 0.86484 0.76557 0.96796 0.86628 0.92695 0.90235 0.91535 0.91523 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.16 16 2 C 0.02 0.29 7.09 37.16 0.26 0.56 16 3 O -0.14 -2.40 10.21 -11.47 -0.12 -2.52 16 4 N -0.50 -9.02 3.01 -66.41 -0.20 -9.22 16 5 C 0.18 2.74 5.83 -5.19 -0.03 2.71 16 6 C -0.11 -1.74 5.25 -104.62 -0.55 -2.29 16 7 C -0.08 -1.32 8.95 -39.58 -0.35 -1.67 16 8 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 9 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16 10 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 11 C -0.10 -1.47 9.70 -39.58 -0.38 -1.85 16 12 C 0.71 15.59 8.21 -86.93 -0.71 14.87 16 13 O -0.58 -13.92 14.18 5.29 0.07 -13.85 16 14 N -0.69 -15.63 5.08 -65.23 -0.33 -15.96 16 15 C 0.18 4.33 4.65 -4.04 -0.02 4.31 16 16 C 0.04 0.96 2.02 -155.66 -0.31 0.64 16 17 C -0.50 -13.02 8.42 -34.44 -0.29 -13.31 16 18 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 19 C 0.08 2.09 5.26 -17.82 -0.09 1.99 16 20 N -0.86 -23.75 10.30 55.43 0.57 -23.17 16 21 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.20 -4.37 9.96 -26.69 -0.27 -4.63 16 26 C -0.21 -4.47 9.92 -26.69 -0.26 -4.74 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.03 8.08 -51.92 -0.42 0.61 16 33 H 0.09 1.29 7.75 -51.93 -0.40 0.89 16 34 H 0.13 2.42 6.89 -52.49 -0.36 2.06 16 35 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.40 9.06 7.27 -40.82 -0.30 8.77 16 40 H 0.01 0.33 8.08 -51.93 -0.42 -0.09 16 41 H 0.12 3.19 5.90 -51.93 -0.31 2.89 16 42 H 0.26 7.21 8.32 -40.82 -0.34 6.87 16 43 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 LS Contribution 384.95 15.07 5.80 5.80 Total: -1.00 -29.66 384.95 -10.30 -39.96 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -7.25 Total: 14.10 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -3.83 Total: -11.28 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.04 Total: -48.35 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.04 Total: -16.37 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.66 -10.30 -39.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838576417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.241 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds